FFCP PHASE1:Mm9::chr16:48994044..48994062,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=224170|HGNC=|MCL_coexpression_id=321|UniProt=Q7TPV2|association_with_transcript=0bp_to_ENSMUST00000114516_5end|description=CAGE_peak_1_at_Dzip3_5end|id=chr16:48994044..48994062,-|ontology_enrichment_celltype=CL:0000540!6.69e-16!33;CL:0000047!6.69e-16!33;CL:0000031!6.69e-16!33;CL:0000404!6.69e-16!33;CL:0000393!1.55e-13!39;CL:0000211!1.55e-13!39;CL:0000221!8.03e-12!44;CL:0000133!8.03e-12!44;CL:0002319!9.94e-12!43;CL:0000117!1.50e-10!23;CL:0000337!1.50e-10!23;CL:0000055!1.19e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,6.02e-16,33;CL:0000047,6.02e-16,33;CL:0000031,6.02e-16,33;CL:0000404,6.02e-16,33;CL:0000393,1.42e-13,39;CL:0000211,1.42e-13,39;CL:0000221,7.45e-12,44;CL:0000133,7.45e-12,44;CL:0002319,9.23e-12,43;CL:0000117,1.40e-10,23;CL:0000337,1.40e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.41e-21!73;UBERON:0005743!8.41e-21!73;UBERON:0000073!3.13e-20!75;UBERON:0001016!3.13e-20!75;UBERON:0002346!4.24e-17!71;UBERON:0003075!4.24e-17!71;UBERON:0007284!4.24e-17!71;UBERON:0004121!1.60e-16!102;UBERON:0000924!1.60e-16!102;UBERON:0006601!1.60e-16!102;UBERON:0000033!3.73e-14!63;UBERON:0001049!5.56e-14!52;UBERON:0005068!5.56e-14!52;UBERON:0006241!5.56e-14!52;UBERON:0007135!5.56e-14!52;UBERON:0002020!3.45e-13!34;UBERON:0003056!3.76e-13!49;UBERON:0000153!1.49e-12!94;UBERON:0000955!1.93e-12!50;UBERON:0006238!1.93e-12!50;UBERON:0002616!7.00e-12!49;UBERON:0007811!5.96e-11!86;UBERON:0002780!1.02e-10!39;UBERON:0001890!1.02e-10!39;UBERON:0006240!1.02e-10!39;UBERON:0003080!1.26e-10!40;UBERON:0002791!6.26e-10!29;UBERON:0003528!6.26e-10!29;UBERON:0001893!6.26e-10!29;UBERON:0000956!2.54e-07!21;UBERON:0001869!2.54e-07!21;UBERON:0000203!2.54e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.30e-21,73;UBERON:0001016,2.73e-20,75;UBERON:0002346,1.29e-18,64;UBERON:0003075,1.29e-18,64;UBERON:0007284,1.29e-18,64;UBERON:0004121,1.85e-17,95;UBERON:0000924,1.85e-17,95;UBERON:0006601,1.85e-17,95;UBERON:0010314,2.24e-15,92;UBERON:0010371,4.26e-15,73;UBERON:0000073,4.60e-15,54;UBERON:0001049,5.08e-14,52;UBERON:0005068,5.08e-14,52;UBERON:0006241,5.08e-14,52;UBERON:0007135,5.08e-14,52;UBERON:0002020,3.17e-13,34;UBERON:0003056,3.45e-13,49;UBERON:0000955,2.50e-11,47;UBERON:0006238,2.50e-11,47;UBERON:0002616,8.82e-11,46;UBERON:0002780,9.56e-11,39;UBERON:0001890,9.56e-11,39;UBERON:0006240,9.56e-11,39;UBERON:0003080,1.18e-10,40;UBERON:0003528,5.89e-10,29;UBERON:0002791,5.89e-10,29;UBERON:0001893,5.89e-10,29;UBERON:0000956,2.43e-07,21;UBERON:0001869,2.43e-07,21;UBERON:0000203,2.43e-07,21|phase1_expression=12.0111635328595,0,0.454999239389536,0,0,0.33575854382378,0.934450562382103,1.80772652818207,0.281577444303333,0.468129052643987,1.19852577757853,1.03703806693937,0.856003649656029,0.611942816932982,6.99530499812892,3.03712901084739,2.09868563438444,2.99689057090326,0.959801035240171,0.42438965179803,6.80346321208558,14.7943517289319,11.7539905112521,0.95995453676044,1.37645568640302,0.57423196411502,0,0.861884930743556,0.190023419456374,1.00812051903972,0.886922042621219,5.71527606113668,5.53558308826113,0,0.866554859253824,0.664938581433969,1.22501613757421,0.837063261473815,0.7813353445238,0,1.76469446409304,0,0,4.02869817521847,4.35920804243913,7.15832333430558,3.9119567217402,6.75877984779384,3.29529274101708,6.61061656852564,2.93971485413261,2.87505128729943,1.00669563634642,0.725362142011344,3.6970317905671,5.65970759279083,5.73066879877513,2.57836046138721,14.1621522601718,10.0508286061686,15.8457850876545,4.06613438482959,2.66788438833342,0.899899717281399,0,0.7104801149461,3.29560121570245,4.61061966385865,19.3899575016853,9.18040380655497,13.4607975264884,30.8503063156108,24.7372765865807,12.9840247167851,9.29701068876893,12.8690630125403,11.0115880999389,16.8547286272448,13.2101618600369,12.7929699098288,13.2657083223494,22.9201883044974,6.14202597803038,16.8828783009504,12.2238598221448,48.3190880176815,43.8504776861237,29.2647129945722,3.86203585999239,5.36558076758177,2.31891590961342,0.860423876981386,0,0.539703191637817,0,0,1.40444420131752,3.40860645156115,1.55871602761721,1.41335829804136,9.01397886570755,8.98285341900225,15.2883143823987,7.11066703153331,2.16491041011214,1.52015919285059,2.02209778005913,1.7127581957859,2.58937883647172,4.00793775475027,8.32729568477452,3.04465478312141,3.92046345335299,6.33035090321015,8.23120949949934,3.76999773989026,0,0.86759614151947,2.65383165584962,5.98537344805414,3.09178125844551,0.969750506270444,0,7.90508151931177,11.51956887474,1.02182822083437,4.07371423320129,4.19931911695385,3.55796635804581,6.5907881338122,8.6925114535539,20.356005042284,10.7771078519211,12.2743419518559,6.2336413367868,12.3303359931496,10.4894544765826,3.11017426525233,3.79084137650512,3.15662783829711,13.4024056251585,11.9549094305406,15.8454674228707,16.2761203262572,17.8935992767992,13.4519406299092,17.5222224926693,4.39795730256327,10.3472636607764,15.5066985737612,23.7534017621331,11.836569551089,12.51212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| ||
|EntrezGene=224170 | |||
|HGNC= | |||
|MCL_coexpression_id=321 | |||
|UniProt=Q7TPV2 | |||
|association_with_transcript=0bp_to_ENSMUST00000114516_5end | |||
|description=CAGE_peak_1_at_Dzip3_5end | |||
|id=chr16:48994044..48994062,- | |||
|ontology_enrichment_celltype=CL:0000540!6.69e-16!33;CL:0000047!6.69e-16!33;CL:0000031!6.69e-16!33;CL:0000404!6.69e-16!33;CL:0000393!1.55e-13!39;CL:0000211!1.55e-13!39;CL:0000221!8.03e-12!44;CL:0000133!8.03e-12!44;CL:0002319!9.94e-12!43;CL:0000117!1.50e-10!23;CL:0000337!1.50e-10!23;CL:0000055!1.19e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.02e-16,33;CL:0000047,6.02e-16,33;CL:0000031,6.02e-16,33;CL:0000404,6.02e-16,33;CL:0000393,1.42e-13,39;CL:0000211,1.42e-13,39;CL:0000221,7.45e-12,44;CL:0000133,7.45e-12,44;CL:0002319,9.23e-12,43;CL:0000117,1.40e-10,23;CL:0000337,1.40e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.41e-21!73;UBERON:0005743!8.41e-21!73;UBERON:0000073!3.13e-20!75;UBERON:0001016!3.13e-20!75;UBERON:0002346!4.24e-17!71;UBERON:0003075!4.24e-17!71;UBERON:0007284!4.24e-17!71;UBERON:0004121!1.60e-16!102;UBERON:0000924!1.60e-16!102;UBERON:0006601!1.60e-16!102;UBERON:0000033!3.73e-14!63;UBERON:0001049!5.56e-14!52;UBERON:0005068!5.56e-14!52;UBERON:0006241!5.56e-14!52;UBERON:0007135!5.56e-14!52;UBERON:0002020!3.45e-13!34;UBERON:0003056!3.76e-13!49;UBERON:0000153!1.49e-12!94;UBERON:0000955!1.93e-12!50;UBERON:0006238!1.93e-12!50;UBERON:0002616!7.00e-12!49;UBERON:0007811!5.96e-11!86;UBERON:0002780!1.02e-10!39;UBERON:0001890!1.02e-10!39;UBERON:0006240!1.02e-10!39;UBERON:0003080!1.26e-10!40;UBERON:0002791!6.26e-10!29;UBERON:0003528!6.26e-10!29;UBERON:0001893!6.26e-10!29;UBERON:0000956!2.54e-07!21;UBERON:0001869!2.54e-07!21;UBERON:0000203!2.54e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.30e-21,73;UBERON:0001016,2.73e-20,75;UBERON:0002346,1.29e-18,64;UBERON:0003075,1.29e-18,64;UBERON:0007284,1.29e-18,64;UBERON:0004121,1.85e-17,95;UBERON:0000924,1.85e-17,95;UBERON:0006601,1.85e-17,95;UBERON:0010314,2.24e-15,92;UBERON:0010371,4.26e-15,73;UBERON:0000073,4.60e-15,54;UBERON:0001049,5.08e-14,52;UBERON:0005068,5.08e-14,52;UBERON:0006241,5.08e-14,52;UBERON:0007135,5.08e-14,52;UBERON:0002020,3.17e-13,34;UBERON:0003056,3.45e-13,49;UBERON:0000955,2.50e-11,47;UBERON:0006238,2.50e-11,47;UBERON:0002616,8.82e-11,46;UBERON:0002780,9.56e-11,39;UBERON:0001890,9.56e-11,39;UBERON:0006240,9.56e-11,39;UBERON:0003080,1.18e-10,40;UBERON:0003528,5.89e-10,29;UBERON:0002791,5.89e-10,29;UBERON:0001893,5.89e-10,29;UBERON:0000956,2.43e-07,21;UBERON:0001869,2.43e-07,21;UBERON:0000203,2.43e-07,21 | |||
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| |||
|short_description=p1@Dzip3 | |||
}} |
Revision as of 12:50, 13 September 2013
Short description: | p1@Dzip3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dzip3_5end |
Coexpression cluster: | MCL_coexpression_mm9:321 |
Association with transcript: | 0bp_to_ENSMUST00000114516_5end |
EntrezGene: | Dzip3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.02e-16 | 33 |
neuronal stem cell | 6.02e-16 | 33 |
neuroblast | 6.02e-16 | 33 |
electrically signaling cell | 6.02e-16 | 33 |
electrically responsive cell | 1.42e-13 | 39 |
electrically active cell | 1.42e-13 | 39 |
ectodermal cell | 7.45e-12 | 44 |
neurectodermal cell | 7.45e-12 | 44 |
neural cell | 9.23e-12 | 43 |
CNS neuron (sensu Vertebrata) | 1.40e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.40e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.30e-21 | 73 |
nervous system | 2.73e-20 | 75 |
neurectoderm | 1.29e-18 | 64 |
neural plate | 1.29e-18 | 64 |
presumptive neural plate | 1.29e-18 | 64 |
ectoderm-derived structure | 1.85e-17 | 95 |
ectoderm | 1.85e-17 | 95 |
presumptive ectoderm | 1.85e-17 | 95 |
structure with developmental contribution from neural crest | 2.24e-15 | 92 |
ecto-epithelium | 4.26e-15 | 73 |
regional part of nervous system | 4.60e-15 | 54 |
neural tube | 5.08e-14 | 52 |
neural rod | 5.08e-14 | 52 |
future spinal cord | 5.08e-14 | 52 |
neural keel | 5.08e-14 | 52 |
gray matter | 3.17e-13 | 34 |
pre-chordal neural plate | 3.45e-13 | 49 |
brain | 2.50e-11 | 47 |
future brain | 2.50e-11 | 47 |
regional part of brain | 8.82e-11 | 46 |
regional part of forebrain | 9.56e-11 | 39 |
forebrain | 9.56e-11 | 39 |
future forebrain | 9.56e-11 | 39 |
anterior neural tube | 1.18e-10 | 40 |
brain grey matter | 5.89e-10 | 29 |
regional part of telencephalon | 5.89e-10 | 29 |
telencephalon | 5.89e-10 | 29 |
cerebral cortex | 2.43e-07 | 21 |
cerebral hemisphere | 2.43e-07 | 21 |
pallium | 2.43e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.