FFCP PHASE1:Mm9::chr17:29629982..29630050,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18712|HGNC=|MCL_coexpression_id=601|UniProt=|association_with_transcript=0bp_to_uc008btb.1_5end|description=CAGE_peak_3_at_Pim1_5end|id=chr17:29629982..29630050,+|ontology_enrichment_celltype=CL:0000838!6.66e-09!12;CL:0000988!1.19e-08!32;CL:0002032!1.19e-08!32;CL:0000037!1.19e-08!32;CL:0000566!1.19e-08!32;CL:0000837!1.19e-08!32;CL:0000084!2.39e-08!11;CL:0000827!2.39e-08!11;CL:0000542!2.58e-08!13;CL:0000051!2.58e-08!13;CL:0002031!3.80e-07!25;CL:0000791!6.08e-07!9;CL:0000789!6.08e-07!9;CL:0002420!6.08e-07!9;CL:0002419!6.08e-07!9;CL:0000790!6.08e-07!9;CL:0000738!9.84e-07!17;CL:0002087!9.84e-07!17|ontology_enrichment_celltype_v019_2=CL:0000988,2.66e-11,32;CL:0002032,2.66e-11,32;CL:0000037,2.66e-11,32;CL:0000837,2.66e-11,32;CL:0000838,1.89e-10,12;CL:0002031,6.82e-10,25;CL:0000084,8.87e-10,11;CL:0000827,8.87e-10,11;CL:0000542,3.40e-09,13;CL:0000051,3.40e-09,13;CL:0000738,4.32e-08,17;CL:0002087,4.32e-08,17;CL:0000791,4.42e-08,9;CL:0000789,4.42e-08,9;CL:0002420,4.42e-08,9;CL:0002419,4.42e-08,9;CL:0000790,4.42e-08,9;CL:0000624,1.80e-07,8;CL:0002320,9.14e-07,46;CL:0000134,9.14e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!2.20e-15!70;UBERON:0005057!5.56e-13!51;UBERON:0002193!3.91e-12!48;UBERON:0002390!1.35e-11!45;UBERON:0003061!1.35e-11!45;UBERON:0004177!2.18e-10!29;UBERON:0002530!6.33e-10!65;UBERON:0002368!6.13e-09!60;UBERON:0000077!1.67e-08!97;UBERON:0003408!2.20e-08!24;UBERON:0000926!3.03e-08!193;UBERON:0004120!3.03e-08!193;UBERON:0006603!3.03e-08!193;UBERON:0002370!3.95e-08!23;UBERON:0000974!3.95e-08!23;UBERON:0004807!3.95e-08!23;UBERON:0005058!3.95e-08!23;UBERON:0003351!3.95e-08!23;UBERON:0009113!3.95e-08!23;UBERON:0003295!3.95e-08!23;UBERON:0009722!3.95e-08!23;UBERON:0005562!3.95e-08!23;UBERON:0007690!3.95e-08!23;UBERON:0006562!4.86e-08!24;UBERON:0001557!4.86e-08!24;UBERON:0001042!4.86e-08!24;UBERON:0008814!4.86e-08!24;UBERON:0009145!4.86e-08!24;UBERON:0003081!1.17e-07!88;UBERON:0001041!1.54e-07!92;UBERON:0003104!5.65e-07!131;UBERON:0009142!5.65e-07!131;UBERON:0005911!6.68e-07!69|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.04e-15,48;UBERON:0002405,3.04e-15,48;UBERON:0002390,1.35e-14,45;UBERON:0003061,1.35e-14,45;UBERON:0000077,1.57e-14,35;UBERON:0004177,2.61e-13,29;UBERON:0005057,2.61e-13,29;UBERON:0003408,7.48e-11,24;UBERON:0002370,1.50e-10,23;UBERON:0000974,1.50e-10,23;UBERON:0004807,1.50e-10,23;UBERON:0005058,1.50e-10,23;UBERON:0003351,1.50e-10,23;UBERON:0009113,1.50e-10,23;UBERON:0003295,1.50e-10,23;UBERON:0009722,1.50e-10,23;UBERON:0005562,1.50e-10,23;UBERON:0007690,1.50e-10,23;UBERON:0006562,2.06e-10,24;UBERON:0001557,2.06e-10,24;UBERON:0001042,2.06e-10,24;UBERON:0008814,2.06e-10,24;UBERON:0009145,2.06e-10,24;UBERON:0001041,2.12e-09,80;UBERON:0002530,5.09e-09,65;UBERON:0000072,2.81e-08,27;UBERON:0002368,5.48e-08,60;UBERON:0003929,7.81e-08,55;UBERON:0005911,2.11e-07,69;UBERON:0001004,3.44e-07,42;UBERON:0000065,6.62e-07,41;UBERON:0003081,7.33e-07,87;UBERON:0002384,9.14e-07,46|phase1_expression=0.480446541314382,0.348975407639361,0,0.30246421130683,0,0,0,64.303415073905,101.508668671352,102.754327055355,42.6332740881507,30.1538761002372,9.58724087614752,9.52882386367072,13.6575002344422,34.0158449214908,23.0855419782288,4.88966356305268,4.79900517620086,7.21462408056651,1.9559956734746,93.8299488848366,153.063076435416,1.91990907352088,1.83527424853736,0.57423196411502,0,0,0.950117097281869,0.504060259519861,0.221730510655305,0,0,0,0.288851619751275,0,0.408338712524738,18.8339233831608,14.0640362014284,17.7998072951091,24.1174910092716,24.589637458504,11.6522484727477,0.377690453926732,0.202753862439029,0.367093504323363,0,0,0.219686182734472,0,0,0,14.9326519391385,33.3666585325218,12.0993767691287,0,0.286533439938757,0,0,0,0,0,0,0.899899717281399,0,0.7104801149461,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0.186399445825301,0.605809546665472,0.0755715601067855,2.6087803983151,0.860423876981386,3.39985666853875,1.07940638327563,0,1.34408066129201,2.52799956237153,0,0,0,0.281686839553361,0,0,0,0.216491041011214,0.253359865475099,0,1.02765491747154,2.84831672011889,1.92974780784272,0.173485326766136,0.913396434936424,0.230615497256059,0.904335843315735,1.29347577849275,0.753999547978053,1.73036477414062,3.90418263683761,4.42305275974937,1.61766849947409,4.63767188766826,5.33362778448744,0,0,0.209446706813455,3.83185582812887,10.4239158320151,5.99902730993408,7.11593271609162,0,0,0,0,0,0,0,0.712875546952214,3.73220911830279,0.252722758433675,1.89397670297827,0.390361328888111,0,0.180062129805349,0.452114453507145,0.680364991513279,0,0,0.258703370739016,0,0.189106080167819,0.351902248327898,0.219195732427575,0.556094498451196,0.696504333044333,0.823128545631774,0.398068533636986,2.80885274925294,1.54408744268829,2.84163499395593,0.828503090142008,1.17263029990548,0.540186184383045,0.23674473558521,0.393528463494808,0.154267112887378,0,0,0.467061369468678,0.16455984991348,0.164167464079095,1.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| ||
|EntrezGene=18712 | |||
|HGNC= | |||
|MCL_coexpression_id=601 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc008btb.1_5end | |||
|description=CAGE_peak_3_at_Pim1_5end | |||
|id=chr17:29629982..29630050,+ | |||
|ontology_enrichment_celltype=CL:0000838!6.66e-09!12;CL:0000988!1.19e-08!32;CL:0002032!1.19e-08!32;CL:0000037!1.19e-08!32;CL:0000566!1.19e-08!32;CL:0000837!1.19e-08!32;CL:0000084!2.39e-08!11;CL:0000827!2.39e-08!11;CL:0000542!2.58e-08!13;CL:0000051!2.58e-08!13;CL:0002031!3.80e-07!25;CL:0000791!6.08e-07!9;CL:0000789!6.08e-07!9;CL:0002420!6.08e-07!9;CL:0002419!6.08e-07!9;CL:0000790!6.08e-07!9;CL:0000738!9.84e-07!17;CL:0002087!9.84e-07!17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.66e-11,32;CL:0002032,2.66e-11,32;CL:0000037,2.66e-11,32;CL:0000837,2.66e-11,32;CL:0000838,1.89e-10,12;CL:0002031,6.82e-10,25;CL:0000084,8.87e-10,11;CL:0000827,8.87e-10,11;CL:0000542,3.40e-09,13;CL:0000051,3.40e-09,13;CL:0000738,4.32e-08,17;CL:0002087,4.32e-08,17;CL:0000791,4.42e-08,9;CL:0000789,4.42e-08,9;CL:0002420,4.42e-08,9;CL:0002419,4.42e-08,9;CL:0000790,4.42e-08,9;CL:0000624,1.80e-07,8;CL:0002320,9.14e-07,46;CL:0000134,9.14e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!2.20e-15!70;UBERON:0005057!5.56e-13!51;UBERON:0002193!3.91e-12!48;UBERON:0002390!1.35e-11!45;UBERON:0003061!1.35e-11!45;UBERON:0004177!2.18e-10!29;UBERON:0002530!6.33e-10!65;UBERON:0002368!6.13e-09!60;UBERON:0000077!1.67e-08!97;UBERON:0003408!2.20e-08!24;UBERON:0000926!3.03e-08!193;UBERON:0004120!3.03e-08!193;UBERON:0006603!3.03e-08!193;UBERON:0002370!3.95e-08!23;UBERON:0000974!3.95e-08!23;UBERON:0004807!3.95e-08!23;UBERON:0005058!3.95e-08!23;UBERON:0003351!3.95e-08!23;UBERON:0009113!3.95e-08!23;UBERON:0003295!3.95e-08!23;UBERON:0009722!3.95e-08!23;UBERON:0005562!3.95e-08!23;UBERON:0007690!3.95e-08!23;UBERON:0006562!4.86e-08!24;UBERON:0001557!4.86e-08!24;UBERON:0001042!4.86e-08!24;UBERON:0008814!4.86e-08!24;UBERON:0009145!4.86e-08!24;UBERON:0003081!1.17e-07!88;UBERON:0001041!1.54e-07!92;UBERON:0003104!5.65e-07!131;UBERON:0009142!5.65e-07!131;UBERON:0005911!6.68e-07!69 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.04e-15,48;UBERON:0002405,3.04e-15,48;UBERON:0002390,1.35e-14,45;UBERON:0003061,1.35e-14,45;UBERON:0000077,1.57e-14,35;UBERON:0004177,2.61e-13,29;UBERON:0005057,2.61e-13,29;UBERON:0003408,7.48e-11,24;UBERON:0002370,1.50e-10,23;UBERON:0000974,1.50e-10,23;UBERON:0004807,1.50e-10,23;UBERON:0005058,1.50e-10,23;UBERON:0003351,1.50e-10,23;UBERON:0009113,1.50e-10,23;UBERON:0003295,1.50e-10,23;UBERON:0009722,1.50e-10,23;UBERON:0005562,1.50e-10,23;UBERON:0007690,1.50e-10,23;UBERON:0006562,2.06e-10,24;UBERON:0001557,2.06e-10,24;UBERON:0001042,2.06e-10,24;UBERON:0008814,2.06e-10,24;UBERON:0009145,2.06e-10,24;UBERON:0001041,2.12e-09,80;UBERON:0002530,5.09e-09,65;UBERON:0000072,2.81e-08,27;UBERON:0002368,5.48e-08,60;UBERON:0003929,7.81e-08,55;UBERON:0005911,2.11e-07,69;UBERON:0001004,3.44e-07,42;UBERON:0000065,6.62e-07,41;UBERON:0003081,7.33e-07,87;UBERON:0002384,9.14e-07,46 | |||
|phase1_expression=0.480446541314382,0.348975407639361,0,0.30246421130683,0,0,0,64.303415073905,101.508668671352,102.754327055355,42.6332740881507,30.1538761002372,9.58724087614752,9.52882386367072,13.6575002344422,34.0158449214908,23.0855419782288,4.88966356305268,4.79900517620086,7.21462408056651,1.9559956734746,93.8299488848366,153.063076435416,1.91990907352088,1.83527424853736,0.57423196411502,0,0,0.950117097281869,0.504060259519861,0.221730510655305,0,0,0,0.288851619751275,0,0.408338712524738,18.8339233831608,14.0640362014284,17.7998072951091,24.1174910092716,24.589637458504,11.6522484727477,0.377690453926732,0.202753862439029,0.367093504323363,0,0,0.219686182734472,0,0,0,14.9326519391385,33.3666585325218,12.0993767691287,0,0.286533439938757,0,0,0,0,0,0,0.899899717281399,0,0.7104801149461,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0.186399445825301,0.605809546665472,0.0755715601067855,2.6087803983151,0.860423876981386,3.39985666853875,1.07940638327563,0,1.34408066129201,2.52799956237153,0,0,0,0.281686839553361,0,0,0,0.216491041011214,0.253359865475099,0,1.02765491747154,2.84831672011889,1.92974780784272,0.173485326766136,0.913396434936424,0.230615497256059,0.904335843315735,1.29347577849275,0.753999547978053,1.73036477414062,3.90418263683761,4.42305275974937,1.61766849947409,4.63767188766826,5.33362778448744,0,0,0.209446706813455,3.83185582812887,10.4239158320151,5.99902730993408,7.11593271609162,0,0,0,0,0,0,0,0.712875546952214,3.73220911830279,0.252722758433675,1.89397670297827,0.390361328888111,0,0.180062129805349,0.452114453507145,0.680364991513279,0,0,0.258703370739016,0,0.189106080167819,0.351902248327898,0.219195732427575,0.556094498451196,0.696504333044333,0.823128545631774,0.398068533636986,2.80885274925294,1.54408744268829,2.84163499395593,0.828503090142008,1.17263029990548,0.540186184383045,0.23674473558521,0.393528463494808,0.154267112887378,0,0,0.467061369468678,0.16455984991348,0.164167464079095,1.05389452409612,0.438599962275997,0.878200461164203,0.671032093801859,0,0.205809224758569,0.991256348951394,0.793351699990633,0.639864751605702,0.232236671860439,0.128867461322093,0,0.22237804384487,0,1.42358718463353,0,0.251335208800269,0.994782360205754,0.779856348476481,0.898819408654221,1.29682829924817,1.39398891278057,0,0.342745537829186,0,0,0.193952487167626,0.631222379012867,0.379419222745544,0.590440591918409,0.784993639206874,0.740382983530803,0.296452627087149,3.83743743147016,9.23827277032054,9.66907083254871,13.7944882544182,17.364755502174,22.9163266603278,12.3709339103849,13.619359049103,3.84385978463314,5.75072826109418,2.23284568601102,1.5601883655728,0,0.358794827043824,0.964887042726734,3.51031061316549,0.37898282354097,0.651859905768103,0.169745085775188,0.704070744865506,1.17254380209271,1.19021820443007,1.56106918286239,1.57635144106191,0.8858587585951,1.43509291791738,1.14704320301017,3.10832967358612,2.31438493730419,4.52373851817817,5.98296252200581,6.39293554924747,9.93372286697037,0,0,0,2.01976741763498,0,0,0,0,0,0,0,0,0,0,1.84522110770749,1.24645922567079,0.81443479676788,1.48473110675282,0,0.242780636154981,0.302323556964751,0.188605079755898,0.590603785761546,0,0.258428293168221,0.363533729477506,0.712994756769443,0.948110273807448,0,1.03135543248187,2.38307724027652,0.36012218806262,0.776152102696527,0.857348140126369,0.354680467284547,0.178368817602071,0.822745103010605,1.2178597964584,15.2536610241412,3.60114520468494,0.220528398054962,1.81374878235628,3.39075296061402,0.72375509913787,1.55184047204077,3.44695889464629,1.45740418314925,0,22.8966980269123,1.03193433981611,5.18544676635193,16.0113188453987,6.56132293060921,10.066239621087,36.375384018685,31.2091738681757,35.2409933201281,1.90934123603023,0.158167996790568,0.203319467126849,0.540026704109006,0.418176592028937,0.218362563746178,0.674321731924103,0.578574190077352,0.26175594198403,0.388844919875379,3.10669656543463,0,0.149516546043979,0.66183396182839,3.11121901350476,1.6790777052105,1.520605129417,0.469428954583016,0.13020438484395,0,0,0.576060012515731,17.0646005139216,4.25722952109345,7.18976700153791,9.74406172333463,5.01274747868948,6.95384741734427,8.05309511783791,7.08909730437971,9.28891339522958,8.38274873204998,11.393358920463,11.2076562850715,13.8545051962074,20.336580979593,1.13365191807606,0,0,0,2.31827512838629,5.2551093126331,3.47988086107804,7.28852488868824,3.00943262421218,0,0,0,0,0,0,0,0,0,0,0.103787347584177,1.19707462020309,1.36586884603307,3.40349403895612,1.88651846365184,0.919217542250071,2.44471400581777,1.64828045791115,0.64183841918363,3.28506375292937,2.02783439912192,2.07488975524684,1.591905626988,2.81710670581425,2.1825478203133,1.42888107384922,1.39061191133827,1.54327376370964,0.824171801606613,2.20798380201596,2.74295401908332,1.24233064311536,2.14592570952589,2.76158191601424,1.41164070622996,1.60767754994185,2.56099162021882,2.63069711437843,0.950628796921032,1.68342681497322,1.66089025373844,1.57607171800902,2.45538625901814,2.3240526177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| |||
|short_description=p3@Pim1 | |||
}} |
Revision as of 14:01, 13 September 2013
Short description: | p3@Pim1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Pim1_5end |
Coexpression cluster: | MCL_coexpression_mm9:601 |
Association with transcript: | 0bp_to_uc008btb.1_5end |
EntrezGene: | Pim1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.66e-11 | 32 |
hematopoietic oligopotent progenitor cell | 2.66e-11 | 32 |
hematopoietic stem cell | 2.66e-11 | 32 |
hematopoietic multipotent progenitor cell | 2.66e-11 | 32 |
lymphoid lineage restricted progenitor cell | 1.89e-10 | 12 |
hematopoietic lineage restricted progenitor cell | 6.82e-10 | 25 |
T cell | 8.87e-10 | 11 |
pro-T cell | 8.87e-10 | 11 |
lymphocyte | 3.40e-09 | 13 |
common lymphoid progenitor | 3.40e-09 | 13 |
leukocyte | 4.32e-08 | 17 |
nongranular leukocyte | 4.32e-08 | 17 |
mature alpha-beta T cell | 4.42e-08 | 9 |
alpha-beta T cell | 4.42e-08 | 9 |
immature T cell | 4.42e-08 | 9 |
mature T cell | 4.42e-08 | 9 |
immature alpha-beta T cell | 4.42e-08 | 9 |
CD4-positive, alpha-beta T cell | 1.80e-07 | 8 |
connective tissue cell | 9.14e-07 | 46 |
mesenchymal cell | 9.14e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.04e-15 | 48 |
immune system | 3.04e-15 | 48 |
hematopoietic system | 1.35e-14 | 45 |
blood island | 1.35e-14 | 45 |
mixed endoderm/mesoderm-derived structure | 1.57e-14 | 35 |
hemopoietic organ | 2.61e-13 | 29 |
immune organ | 2.61e-13 | 29 |
gland of gut | 7.48e-11 | 24 |
thymus | 1.50e-10 | 23 |
neck | 1.50e-10 | 23 |
respiratory system epithelium | 1.50e-10 | 23 |
hemolymphoid system gland | 1.50e-10 | 23 |
pharyngeal epithelium | 1.50e-10 | 23 |
thymic region | 1.50e-10 | 23 |
pharyngeal gland | 1.50e-10 | 23 |
entire pharyngeal arch endoderm | 1.50e-10 | 23 |
thymus primordium | 1.50e-10 | 23 |
early pharyngeal endoderm | 1.50e-10 | 23 |
pharynx | 2.06e-10 | 24 |
upper respiratory tract | 2.06e-10 | 24 |
chordate pharynx | 2.06e-10 | 24 |
pharyngeal arch system | 2.06e-10 | 24 |
pharyngeal region of foregut | 2.06e-10 | 24 |
foregut | 2.12e-09 | 80 |
gland | 5.09e-09 | 65 |
segment of respiratory tract | 2.81e-08 | 27 |
endocrine gland | 5.48e-08 | 60 |
gut epithelium | 7.81e-08 | 55 |
endo-epithelium | 2.11e-07 | 69 |
respiratory system | 3.44e-07 | 42 |
respiratory tract | 6.62e-07 | 41 |
lateral plate mesoderm | 7.33e-07 | 87 |
connective tissue | 9.14e-07 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.