FFCP PHASE1:Mm9::chr1:23929233..23929277,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=98366|HGNC=|MCL_coexpression_id=0|UniProt=Q91VZ6|association_with_transcript=-77bp_to_ENSMUST00000027339_5end|description=CAGE_peak_4_at_Smap1_5end|id=chr1:23929233..23929277,-|ontology_enrichment_celltype=CL:0000117!1.17e-10!23;CL:0000337!1.17e-10!23;CL:0000540!9.19e-10!33;CL:0000047!9.19e-10!33;CL:0000031!9.19e-10!33;CL:0000404!9.19e-10!33;CL:0000393!2.52e-09!39;CL:0000211!2.52e-09!39;CL:0000221!1.22e-08!44;CL:0000133!1.22e-08!44;CL:0002319!1.38e-08!43;CL:0000055!7.18e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.02e-10,23;CL:0000337,1.02e-10,23;CL:0000540,8.09e-10,33;CL:0000047,8.09e-10,33;CL:0000031,8.09e-10,33;CL:0000404,8.09e-10,33;CL:0000393,2.23e-09,39;CL:0000211,2.23e-09,39;CL:0000221,1.31e-08,44;CL:0000133,1.31e-08,44;CL:0002319,1.49e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.37e-15!73;UBERON:0005743!9.37e-15!73;UBERON:0000073!9.71e-15!75;UBERON:0001016!9.71e-15!75;UBERON:0004121!2.22e-14!102;UBERON:0000924!2.22e-14!102;UBERON:0006601!2.22e-14!102;UBERON:0001049!8.51e-12!52;UBERON:0005068!8.51e-12!52;UBERON:0006241!8.51e-12!52;UBERON:0007135!8.51e-12!52;UBERON:0002346!1.12e-11!71;UBERON:0003075!1.12e-11!71;UBERON:0007284!1.12e-11!71;UBERON:0002020!1.31e-11!34;UBERON:0000033!1.32e-10!63;UBERON:0003056!1.54e-10!49;UBERON:0000955!3.27e-10!50;UBERON:0006238!3.27e-10!50;UBERON:0002616!7.26e-10!49;UBERON:0003080!5.39e-09!40;UBERON:0002791!6.74e-09!29;UBERON:0003528!6.74e-09!29;UBERON:0001893!6.74e-09!29;UBERON:0002780!1.20e-08!39;UBERON:0001890!1.20e-08!39;UBERON:0006240!1.20e-08!39;UBERON:0000956!2.13e-07!21;UBERON:0001869!2.13e-07!21;UBERON:0000203!2.13e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.17e-15,95;UBERON:0000924,3.17e-15,95;UBERON:0006601,3.17e-15,95;UBERON:0001017,1.26e-14,73;UBERON:0001016,1.30e-14,75;UBERON:0010371,8.28e-13,73;UBERON:0002346,1.07e-12,64;UBERON:0003075,1.07e-12,64;UBERON:0007284,1.07e-12,64;UBERON:0000073,2.84e-12,54;UBERON:0001049,1.20e-11,52;UBERON:0005068,1.20e-11,52;UBERON:0006241,1.20e-11,52;UBERON:0007135,1.20e-11,52;UBERON:0002020,1.51e-11,34;UBERON:0003056,1.79e-10,49;UBERON:0010314,8.57e-10,92;UBERON:0000955,3.56e-09,47;UBERON:0006238,3.56e-09,47;UBERON:0003080,6.40e-09,40;UBERON:0002616,7.76e-09,46;UBERON:0003528,7.92e-09,29;UBERON:0002791,7.92e-09,29;UBERON:0001893,7.92e-09,29;UBERON:0002780,1.43e-08,39;UBERON:0001890,1.43e-08,39;UBERON:0006240,1.43e-08,39;UBERON:0000956,1.94e-07,21;UBERON:0001869,1.94e-07,21;UBERON:0000203,1.94e-07,21|phase1_expression=2.24208385946712,0,0.454999239389536,0.30246421130683,0.500895729946347,0.503637815735669,0.233612640595526,1.80772652818207,0.422366166455,0.234064526321993,0.34243593645101,0.717949430958028,0.684802919724823,0.961624426608971,3.33109761815663,1.01237633694913,2.79824751251259,0.157731082679119,0.959801035240171,1.27316895539409,18.0291775120268,1.48936426801328,1.04479915655574,0.639969691173627,1.14704640533585,0,0.86152399231815,1.07735616342945,0.190023419456374,0.504060259519861,1.33038306393183,0.635030673459631,1.23012957516914,0,0.577703239502549,0.498703936075477,0.612508068787107,0.837063261473815,1.5626706890476,2.61761871986899,1.76469446409304,0.683045484958446,0,2.26614272356039,2.33166941804883,3.12029478674859,4.69434806608824,0.872100625521786,1.5378032791413,2.3331587888914,3.07970127575798,2.87505128729943,0.838913030288682,0.725362142011344,0.672187598284928,1.54355661621568,2.86533439938757,2.57836046138721,9.91350658212029,10.0508286061686,6.97214543856797,1.69422266034566,3.55717918444456,1.3498495759221,3.9554654502679,1.4209602298922,1.79760066311043,1.92109152660777,6.63613518774257,6.75029691658453,6.09942387919008,5.14171771926846,4.63823935998388,4.40966877173835,5.17565543498476,1.83843757322004,3.30347642998166,3.19218345212969,4.45458946443106,7.91317726381163,10.7040543014819,10.939180781692,3.35019598801657,2.25105044012672,2.44477196442896,7.66034322231536,8.96941589034349,6.15118171223492,2.34751199332871,2.56943304363071,0.289864488701678,0.860423876981386,1.3599426674155,0,0.649776417447669,1.79210754838934,1.96622188184453,3.57903677413921,3.11743205523443,2.47337702157238,2.67602497575693,1.28326477414318,5.09610479413291,7.11066703153331,0.649473123033642,1.01343946190039,2.52762222507392,3.19714863213368,0.776813650941515,1.03909497345377,1.73485326766136,1.82679286987285,2.53677046981664,3.01445281105245,3.41007250693544,0.879666139307728,1.23597483867187,1.01219549843938,0.884610551949874,3.39710384889559,2.87093973998512,1.93950101254089,0,2.04946557908083,1.8850203613211,0.510914110417183,1.67741174308288,2.39961092397363,1.65191295194984,3.89455662452539,0.915001205637253,9.67538511269056,4.51943232499919,4.09144731728529,3.1168206683934,4.05603157669394,3.66621709861139,1.8661045591514,2.27450482590307,1.05220927943237,4.94457683258274,2.75882525320168,3.06105620669094,4.06903008156431,5.03470093719826,3.84341160854549,5.62210347358373,1.81092359517311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| ||
|EntrezGene=98366 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q91VZ6 | |||
|association_with_transcript=-77bp_to_ENSMUST00000027339_5end | |||
|description=CAGE_peak_4_at_Smap1_5end | |||
|id=chr1:23929233..23929277,- | |||
|ontology_enrichment_celltype=CL:0000117!1.17e-10!23;CL:0000337!1.17e-10!23;CL:0000540!9.19e-10!33;CL:0000047!9.19e-10!33;CL:0000031!9.19e-10!33;CL:0000404!9.19e-10!33;CL:0000393!2.52e-09!39;CL:0000211!2.52e-09!39;CL:0000221!1.22e-08!44;CL:0000133!1.22e-08!44;CL:0002319!1.38e-08!43;CL:0000055!7.18e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.02e-10,23;CL:0000337,1.02e-10,23;CL:0000540,8.09e-10,33;CL:0000047,8.09e-10,33;CL:0000031,8.09e-10,33;CL:0000404,8.09e-10,33;CL:0000393,2.23e-09,39;CL:0000211,2.23e-09,39;CL:0000221,1.31e-08,44;CL:0000133,1.31e-08,44;CL:0002319,1.49e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.37e-15!73;UBERON:0005743!9.37e-15!73;UBERON:0000073!9.71e-15!75;UBERON:0001016!9.71e-15!75;UBERON:0004121!2.22e-14!102;UBERON:0000924!2.22e-14!102;UBERON:0006601!2.22e-14!102;UBERON:0001049!8.51e-12!52;UBERON:0005068!8.51e-12!52;UBERON:0006241!8.51e-12!52;UBERON:0007135!8.51e-12!52;UBERON:0002346!1.12e-11!71;UBERON:0003075!1.12e-11!71;UBERON:0007284!1.12e-11!71;UBERON:0002020!1.31e-11!34;UBERON:0000033!1.32e-10!63;UBERON:0003056!1.54e-10!49;UBERON:0000955!3.27e-10!50;UBERON:0006238!3.27e-10!50;UBERON:0002616!7.26e-10!49;UBERON:0003080!5.39e-09!40;UBERON:0002791!6.74e-09!29;UBERON:0003528!6.74e-09!29;UBERON:0001893!6.74e-09!29;UBERON:0002780!1.20e-08!39;UBERON:0001890!1.20e-08!39;UBERON:0006240!1.20e-08!39;UBERON:0000956!2.13e-07!21;UBERON:0001869!2.13e-07!21;UBERON:0000203!2.13e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.17e-15,95;UBERON:0000924,3.17e-15,95;UBERON:0006601,3.17e-15,95;UBERON:0001017,1.26e-14,73;UBERON:0001016,1.30e-14,75;UBERON:0010371,8.28e-13,73;UBERON:0002346,1.07e-12,64;UBERON:0003075,1.07e-12,64;UBERON:0007284,1.07e-12,64;UBERON:0000073,2.84e-12,54;UBERON:0001049,1.20e-11,52;UBERON:0005068,1.20e-11,52;UBERON:0006241,1.20e-11,52;UBERON:0007135,1.20e-11,52;UBERON:0002020,1.51e-11,34;UBERON:0003056,1.79e-10,49;UBERON:0010314,8.57e-10,92;UBERON:0000955,3.56e-09,47;UBERON:0006238,3.56e-09,47;UBERON:0003080,6.40e-09,40;UBERON:0002616,7.76e-09,46;UBERON:0003528,7.92e-09,29;UBERON:0002791,7.92e-09,29;UBERON:0001893,7.92e-09,29;UBERON:0002780,1.43e-08,39;UBERON:0001890,1.43e-08,39;UBERON:0006240,1.43e-08,39;UBERON:0000956,1.94e-07,21;UBERON:0001869,1.94e-07,21;UBERON:0000203,1.94e-07,21 | |||
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| |||
|short_description=p4@Smap1 | |||
}} |
Revision as of 20:11, 13 September 2013
Short description: | p4@Smap1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Smap1_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | -77bp_to_ENSMUST00000027339_5end |
EntrezGene: | Smap1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.02e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.02e-10 | 23 |
neuron | 8.09e-10 | 33 |
neuronal stem cell | 8.09e-10 | 33 |
neuroblast | 8.09e-10 | 33 |
electrically signaling cell | 8.09e-10 | 33 |
electrically responsive cell | 2.23e-09 | 39 |
electrically active cell | 2.23e-09 | 39 |
ectodermal cell | 1.31e-08 | 44 |
neurectodermal cell | 1.31e-08 | 44 |
neural cell | 1.49e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.17e-15 | 95 |
ectoderm | 3.17e-15 | 95 |
presumptive ectoderm | 3.17e-15 | 95 |
central nervous system | 1.26e-14 | 73 |
nervous system | 1.30e-14 | 75 |
ecto-epithelium | 8.28e-13 | 73 |
neurectoderm | 1.07e-12 | 64 |
neural plate | 1.07e-12 | 64 |
presumptive neural plate | 1.07e-12 | 64 |
regional part of nervous system | 2.84e-12 | 54 |
neural tube | 1.20e-11 | 52 |
neural rod | 1.20e-11 | 52 |
future spinal cord | 1.20e-11 | 52 |
neural keel | 1.20e-11 | 52 |
gray matter | 1.51e-11 | 34 |
pre-chordal neural plate | 1.79e-10 | 49 |
structure with developmental contribution from neural crest | 8.57e-10 | 92 |
brain | 3.56e-09 | 47 |
future brain | 3.56e-09 | 47 |
anterior neural tube | 6.40e-09 | 40 |
regional part of brain | 7.76e-09 | 46 |
brain grey matter | 7.92e-09 | 29 |
regional part of telencephalon | 7.92e-09 | 29 |
telencephalon | 7.92e-09 | 29 |
regional part of forebrain | 1.43e-08 | 39 |
forebrain | 1.43e-08 | 39 |
future forebrain | 1.43e-08 | 39 |
cerebral cortex | 1.94e-07 | 21 |
cerebral hemisphere | 1.94e-07 | 21 |
pallium | 1.94e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.