FFCP PHASE1:Mm9::chr2:105509045..105509071,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=18508|HGNC=|MCL_coexpression_id=57|UniProt=F8WGP8,P63015,E9PWD7,A2A410,A2A411,Q8VBX9|association_with_transcript=0bp_to_ENSMUST00000016435,ENSMUST00000111086,ENSMUST00000111087,ENSMUST00000167211,NM_001244198,NM_001244201,uc008lku.1,uc008lkv.1,uc012cat.1_5end|description=CAGE_peak_1_at_Pax6_5end|id=chr2:105509045..105509071,+|ontology_enrichment_celltype=CL:0000117!1.42e-11!23;CL:0000337!1.42e-11!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.92e-08,23;CL:0000337,1.92e-08,23;CL:0002609,4.45e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.95e-18!63;UBERON:0003056!4.97e-18!49;UBERON:0002346!2.64e-15!71;UBERON:0003075!2.64e-15!71;UBERON:0007284!2.64e-15!71;UBERON:0001049!3.30e-14!52;UBERON:0005068!3.30e-14!52;UBERON:0006241!3.30e-14!52;UBERON:0007135!3.30e-14!52;UBERON:0000955!5.12e-14!50;UBERON:0006238!5.12e-14!50;UBERON:0001017!1.56e-13!73;UBERON:0005743!1.56e-13!73;UBERON:0002616!2.48e-13!49;UBERON:0000073!1.18e-12!75;UBERON:0001016!1.18e-12!75;UBERON:0002780!9.50e-12!39;UBERON:0001890!9.50e-12!39;UBERON:0006240!9.50e-12!39;UBERON:0002020!1.13e-11!34;UBERON:0004121!1.65e-11!102;UBERON:0000924!1.65e-11!102;UBERON:0006601!1.65e-11!102;UBERON:0003080!3.83e-11!40;UBERON:0002791!3.01e-10!29;UBERON:0003528!3.01e-10!29;UBERON:0001893!3.01e-10!29;UBERON:0000970!3.81e-09!9;UBERON:0000019!3.81e-09!9;UBERON:0000047!3.81e-09!9;UBERON:0004088!3.81e-09!9;UBERON:0002104!3.81e-09!9;UBERON:0001456!3.81e-09!9;UBERON:0003072!3.81e-09!9;UBERON:0003071!3.81e-09!9;UBERON:0004128!3.81e-09!9;UBERON:0007811!1.93e-08!86;UBERON:0000956!2.40e-07!21;UBERON:0001869!2.40e-07!21;UBERON:0000203!2.40e-07!21;UBERON:0002108!3.81e-07!16;UBERON:0001264!6.15e-07!12;UBERON:0003922!6.15e-07!12;UBERON:0002114!6.15e-07!12;UBERON:0003923!6.15e-07!12;UBERON:0003924!6.15e-07!12;UBERON:0003921!6.15e-07!12;UBERON:0001444!9.78e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0003056,6.37e-13,49;UBERON:0000970,4.29e-12,9;UBERON:0000019,4.29e-12,9;UBERON:0000047,4.29e-12,9;UBERON:0010312,4.29e-12,9;UBERON:0004088,4.29e-12,9;UBERON:0002104,4.29e-12,9;UBERON:0001456,4.29e-12,9;UBERON:0003072,4.29e-12,9;UBERON:0004128,4.29e-12,9;UBERON:0003071,4.29e-12,9;UBERON:0002346,6.11e-12,64;UBERON:0003075,6.11e-12,64;UBERON:0007284,6.11e-12,64;UBERON:0004121,4.36e-10,95;UBERON:0000924,4.36e-10,95;UBERON:0006601,4.36e-10,95;UBERON:0001444,2.42e-09,11;UBERON:0010371,3.62e-09,73;UBERON:0000020,2.56e-08,12;UBERON:0001032,2.56e-08,12;UBERON:0004456,2.56e-08,12;UBERON:0001264,4.74e-08,12;UBERON:0000033,1.85e-07,13;UBERON:0005085,1.85e-07,13;UBERON:0001017,2.14e-07,73;UBERON:0000955,2.33e-07,47;UBERON:0006238,2.33e-07,47;UBERON:0000073,4.22e-07,54;UBERON:0001016,5.83e-07,75|phase1_expression=0,0.697950815278722,0,0,0,1.17515490338323,3.03696432774183,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,0.47997726838022,0.68822784320151,0,0.430761996159075,0.646413698057667,0.190023419456374,0.252030129759931,1.10865255327652,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,4.83309602015838,4.08302788055995,1.1198913730029,1.43752564364972,0,0,0,0,0,0,4.24864567805155,2.64495489636016,5.70448263155561,0.677689064138264,0,0,0,0,0.299600110518405,1.53687322128622,9.95420278161385,7.42532660824299,7.99234853135252,0.571301968807607,0.883474163806454,2.69479758272899,2.68367318851062,5.51531271966013,1.10115880999389,0.510749352340751,1.22885226604995,9.62769900430415,10.9785172322892,4.16730696445408,0.837548997004143,0.56276261003168,0.763991238884051,0.883885756421003,1.42371680799103,1.67759501242771,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0307518057506,20.1068838540917,0.510914110417183,0,0,0,0,0.915001205637253,0.628271760564322,0.347648640384553,0.255715457330331,0.83115217823824,1.1356888414743,0,0,0,86.2811609134543,63.7590170517248,63.9127850325055,88.9506921238425,90.422890701429,84.9095509408572,94.0354706890797,80.6771848459265,84.0785954901801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,1.13195073617213,0.330418782983798,0.264450566663544,0,0.464473343720877,0.644337306610467,0.80673409849337,0.889512175379481,0.190225626112559,0.474529061544512,0.494096864172033,0.502670417600539,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28440471990234,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,9.96096080907602,0,0,0,0,2.65490276679926,10.9251286269742,9.06970670894253,6.03536255218874,6.496641643377,5.84126781093462,4.65170927702798,3.99887102425256,4.9909632973861,0.948110273807448,1.05418608574999,0,1.70219802876894,13.5045820523483,0.258717367565509,0.428674070063185,0.177340233642274,1.07021290561242,0.493647061806363,0,0,0,0,0,0,0,0,0,0.582961673259701,0.556275906031529,0,0,0,0,0,0,0,0,0,0.954670618015114,0,1.62655573701479,0.216010681643603,0,0.218362563746178,0.134864346384821,0.247960367176008,1.04702376793612,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,1.14579102687879,1.03111909406213,1.37016503954128,0,2.02506750069542,1.80128481289688,0.453142408984205,0.51776031175182,3.1136204275253,3.19219898720825,2.21953687480374,2.43106717068294,1.25767897576789,1.65459157605013,2.22246727801615,1.64828045791115,2.88827288632634,2.52697211763797,1.52087579934144,1.69763707247469,1.77918864192777,1.92075457214608,1.55075766180156,2.85776214769844,1.97003354106254,1.15745532278223,0.412085900803307,0.883193520806384,2.05721551431249,1.59728225543404,2.14592570952589,2.32554266611726,2.1645157495526,1.94613598150856,2.56099162021882,2.63069711437843,1.08643291076689,2.24456908663095,1.66089025373844,1.67457620038458,2.86461730218783,1.70430525304563,1.54325288784913,4.49659040288303,2.33931608445408,0.859484216193193,0,0,0|short_description=p1@Pax6}} | ||
|EntrezGene=18508 | |||
|HGNC= | |||
|MCL_coexpression_id=57 | |||
|UniProt=F8WGP8,P63015,E9PWD7,A2A410,A2A411,Q8VBX9 | |||
|association_with_transcript=0bp_to_ENSMUST00000016435,ENSMUST00000111086,ENSMUST00000111087,ENSMUST00000167211,NM_001244198,NM_001244201,uc008lku.1,uc008lkv.1,uc012cat.1_5end | |||
|description=CAGE_peak_1_at_Pax6_5end | |||
|id=chr2:105509045..105509071,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.42e-11!23;CL:0000337!1.42e-11!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.92e-08,23;CL:0000337,1.92e-08,23;CL:0002609,4.45e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.95e-18!63;UBERON:0003056!4.97e-18!49;UBERON:0002346!2.64e-15!71;UBERON:0003075!2.64e-15!71;UBERON:0007284!2.64e-15!71;UBERON:0001049!3.30e-14!52;UBERON:0005068!3.30e-14!52;UBERON:0006241!3.30e-14!52;UBERON:0007135!3.30e-14!52;UBERON:0000955!5.12e-14!50;UBERON:0006238!5.12e-14!50;UBERON:0001017!1.56e-13!73;UBERON:0005743!1.56e-13!73;UBERON:0002616!2.48e-13!49;UBERON:0000073!1.18e-12!75;UBERON:0001016!1.18e-12!75;UBERON:0002780!9.50e-12!39;UBERON:0001890!9.50e-12!39;UBERON:0006240!9.50e-12!39;UBERON:0002020!1.13e-11!34;UBERON:0004121!1.65e-11!102;UBERON:0000924!1.65e-11!102;UBERON:0006601!1.65e-11!102;UBERON:0003080!3.83e-11!40;UBERON:0002791!3.01e-10!29;UBERON:0003528!3.01e-10!29;UBERON:0001893!3.01e-10!29;UBERON:0000970!3.81e-09!9;UBERON:0000019!3.81e-09!9;UBERON:0000047!3.81e-09!9;UBERON:0004088!3.81e-09!9;UBERON:0002104!3.81e-09!9;UBERON:0001456!3.81e-09!9;UBERON:0003072!3.81e-09!9;UBERON:0003071!3.81e-09!9;UBERON:0004128!3.81e-09!9;UBERON:0007811!1.93e-08!86;UBERON:0000956!2.40e-07!21;UBERON:0001869!2.40e-07!21;UBERON:0000203!2.40e-07!21;UBERON:0002108!3.81e-07!16;UBERON:0001264!6.15e-07!12;UBERON:0003922!6.15e-07!12;UBERON:0002114!6.15e-07!12;UBERON:0003923!6.15e-07!12;UBERON:0003924!6.15e-07!12;UBERON:0003921!6.15e-07!12;UBERON:0001444!9.78e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,6.37e-13,49;UBERON:0000970,4.29e-12,9;UBERON:0000019,4.29e-12,9;UBERON:0000047,4.29e-12,9;UBERON:0010312,4.29e-12,9;UBERON:0004088,4.29e-12,9;UBERON:0002104,4.29e-12,9;UBERON:0001456,4.29e-12,9;UBERON:0003072,4.29e-12,9;UBERON:0004128,4.29e-12,9;UBERON:0003071,4.29e-12,9;UBERON:0002346,6.11e-12,64;UBERON:0003075,6.11e-12,64;UBERON:0007284,6.11e-12,64;UBERON:0004121,4.36e-10,95;UBERON:0000924,4.36e-10,95;UBERON:0006601,4.36e-10,95;UBERON:0001444,2.42e-09,11;UBERON:0010371,3.62e-09,73;UBERON:0000020,2.56e-08,12;UBERON:0001032,2.56e-08,12;UBERON:0004456,2.56e-08,12;UBERON:0001264,4.74e-08,12;UBERON:0000033,1.85e-07,13;UBERON:0005085,1.85e-07,13;UBERON:0001017,2.14e-07,73;UBERON:0000955,2.33e-07,47;UBERON:0006238,2.33e-07,47;UBERON:0000073,4.22e-07,54;UBERON:0001016,5.83e-07,75 | |||
|phase1_expression=0,0.697950815278722,0,0,0,1.17515490338323,3.03696432774183,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,0.47997726838022,0.68822784320151,0,0.430761996159075,0.646413698057667,0.190023419456374,0.252030129759931,1.10865255327652,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.436050312760893,4.83309602015838,4.08302788055995,1.1198913730029,1.43752564364972,0,0,0,0,0,0,4.24864567805155,2.64495489636016,5.70448263155561,0.677689064138264,0,0,0,0,0.299600110518405,1.53687322128622,9.95420278161385,7.42532660824299,7.99234853135252,0.571301968807607,0.883474163806454,2.69479758272899,2.68367318851062,5.51531271966013,1.10115880999389,0.510749352340751,1.22885226604995,9.62769900430415,10.9785172322892,4.16730696445408,0.837548997004143,0.56276261003168,0.763991238884051,0.883885756421003,1.42371680799103,1.67759501242771,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0307518057506,20.1068838540917,0.510914110417183,0,0,0,0,0.915001205637253,0.628271760564322,0.347648640384553,0.255715457330331,0.83115217823824,1.1356888414743,0,0,0,86.2811609134543,63.7590170517248,63.9127850325055,88.9506921238425,90.422890701429,84.9095509408572,94.0354706890797,80.6771848459265,84.0785954901801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,1.13195073617213,0.330418782983798,0.264450566663544,0,0.464473343720877,0.644337306610467,0.80673409849337,0.889512175379481,0.190225626112559,0.474529061544512,0.494096864172033,0.502670417600539,0.198956472041151,0.19496408711912,0,0,0.199141273254367,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28440471990234,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,9.96096080907602,0,0,0,0,2.65490276679926,10.9251286269742,9.06970670894253,6.03536255218874,6.496641643377,5.84126781093462,4.65170927702798,3.99887102425256,4.9909632973861,0.948110273807448,1.05418608574999,0,1.70219802876894,13.5045820523483,0.258717367565509,0.428674070063185,0.177340233642274,1.07021290561242,0.493647061806363,0,0,0,0,0,0,0,0,0,0.582961673259701,0.556275906031529,0,0,0,0,0,0,0,0,0,0.954670618015114,0,1.62655573701479,0.216010681643603,0,0.218362563746178,0.134864346384821,0.247960367176008,1.04702376793612,0,0,0,0,0,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,1.14579102687879,1.03111909406213,1.37016503954128,0,2.02506750069542,1.80128481289688,0.453142408984205,0.51776031175182,3.1136204275253,3.19219898720825,2.21953687480374,2.43106717068294,1.25767897576789,1.65459157605013,2.22246727801615,1.64828045791115,2.88827288632634,2.52697211763797,1.52087579934144,1.69763707247469,1.77918864192777,1.92075457214608,1.55075766180156,2.85776214769844,1.97003354106254,1.15745532278223,0.412085900803307,0.883193520806384,2.05721551431249,1.59728225543404,2.14592570952589,2.32554266611726,2.1645157495526,1.94613598150856,2.56099162021882,2.63069711437843,1.08643291076689,2.24456908663095,1.66089025373844,1.67457620038458,2.86461730218783,1.70430525304563,1.54325288784913,4.49659040288303,2.33931608445408,0.859484216193193,0,0,0 | |||
|short_description=p1@Pax6 | |||
}} |
Revision as of 21:32, 13 September 2013
Short description: | p1@Pax6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pax6_5end |
Coexpression cluster: | MCL_coexpression_mm9:57 |
Association with transcript: | 0bp_to_ENSMUST00000016435, ENSMUST00000111086, ENSMUST00000111087, ENSMUST00000167211, NM_001244198, NM_001244201, uc008lku.1, uc008lkv.1, uc012cat.1_5end |
EntrezGene: | Pax6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.92e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.92e-08 | 23 |
neuron of cerebral cortex | 4.45e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 6.37e-13 | 49 |
eye | 4.29e-12 | 9 |
camera-type eye | 4.29e-12 | 9 |
simple eye | 4.29e-12 | 9 |
immature eye | 4.29e-12 | 9 |
ocular region | 4.29e-12 | 9 |
visual system | 4.29e-12 | 9 |
face | 4.29e-12 | 9 |
optic cup | 4.29e-12 | 9 |
optic vesicle | 4.29e-12 | 9 |
eye primordium | 4.29e-12 | 9 |
neurectoderm | 6.11e-12 | 64 |
neural plate | 6.11e-12 | 64 |
presumptive neural plate | 6.11e-12 | 64 |
ectoderm-derived structure | 4.36e-10 | 95 |
ectoderm | 4.36e-10 | 95 |
presumptive ectoderm | 4.36e-10 | 95 |
subdivision of head | 2.42e-09 | 11 |
ecto-epithelium | 3.62e-09 | 73 |
sense organ | 2.56e-08 | 12 |
sensory system | 2.56e-08 | 12 |
entire sense organ system | 2.56e-08 | 12 |
pancreas | 4.74e-08 | 12 |
head | 1.85e-07 | 13 |
ectodermal placode | 1.85e-07 | 13 |
central nervous system | 2.14e-07 | 73 |
brain | 2.33e-07 | 47 |
future brain | 2.33e-07 | 47 |
regional part of nervous system | 4.22e-07 | 54 |
nervous system | 5.83e-07 | 75 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.