FFCP PHASE1:Hg19::chr7:107968999..107969017,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4897|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7994|TSSclassifier=S|UniProt=C9JF43|association_with_transcript=-67bp_to_ENST00000442580_5end|coexpression_cluster_id=C276|description=CAGE_peak_10_at_NRCAM_5end|id=chr7:107968999..107969017,-|ontology_enrichment_celltype=CL:0000128!5.93e-10!7;CL:0000126!5.93e-10!7;CL:0000127!5.93e-10!7;CL:0002453!5.93e-10!7;CL:0002605!1.88e-09!3;CL:0002322!1.75e-07!5|ontology_enrichment_celltype_v019=CL:0002605;1.49e-35;3!CL:0000128;5.15e-27;7!CL:0000126;5.15e-27;7!CL:0000127;5.15e-27;7!CL:0000313;8.15e-13;1!CL:0000243;2.64e-11;15!CL:0000125;2.64e-11;15!CL:0002319;9.24e-11;25!CL:0000095;3.87e-10;17!CL:0000159;4.83e-07;2|ontology_enrichment_celltype_v019_2=CL:0002605,1.24e-35,3;CL:0000128,4.65e-27,7;CL:0000126,4.65e-27,7;CL:0000127,4.65e-27,7;CL:0002453,4.65e-27,7;CL:0000313,9.73e-13,1;CL:0000243,2.53e-11,15;CL:0000125,2.53e-11,15;CL:0000030,2.53e-11,15;CL:0000339,2.53e-11,15;CL:0002319,9.43e-11,25;CL:0000095,3.73e-10,17;CL:0000123,3.73e-10,17;CL:0000159,5.28e-07,2|ontology_enrichment_development_v019=UBERON:0006215;1.04e-35;3!CL:0000339;2.64e-11;15|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0050619;2.32e-13;1!DOID:1357;2.32e-13;1!DOID:5409;5.72e-13;4!DOID:2152;8.15e-13;1!DOID:1325;8.64e-08;7!DOID:3904;8.64e-08;7!DOID:0050615;2.59e-07;16!DOID:4468;4.83e-07;2|ontology_enrichment_disease_v019_2=DOID:0050619,2.32e-13,1;DOID:1357,2.32e-13,1;DOID:5409,5.39e-13,4;DOID:2152,9.73e-13,1;DOID:1325,8.35e-08,7;DOID:3904,8.35e-08,7;DOID:0050615,2.53e-07,16;DOID:4468,4.69e-07,2|ontology_enrichment_uberon=UBERON:0001049!2.12e-53!57;UBERON:0005068!2.12e-53!57;UBERON:0006241!2.12e-53!57;UBERON:0007135!2.12e-53!57;UBERON:0001017!7.05e-50!82;UBERON:0000955!1.26e-49!69;UBERON:0006238!1.26e-49!69;UBERON:0005743!1.40e-49!86;UBERON:0002616!2.01e-48!59;UBERON:0000073!8.54e-44!94;UBERON:0001016!8.54e-44!94;UBERON:0003075!1.32e-42!86;UBERON:0007284!1.32e-42!86;UBERON:0002780!2.85e-40!41;UBERON:0001890!2.85e-40!41;UBERON:0006240!2.85e-40!41;UBERON:0002346!3.32e-40!90;UBERON:0003080!3.82e-39!42;UBERON:0003056!2.04e-33!61;UBERON:0001893!6.13e-33!34;UBERON:0002020!1.30e-32!34;UBERON:0003528!1.30e-32!34;UBERON:0000033!2.98e-31!123;UBERON:0002791!4.03e-31!33;UBERON:0000153!3.00e-29!129;UBERON:0007811!3.00e-29!129;UBERON:0001869!3.36e-29!32;UBERON:0007023!7.87e-26!115;UBERON:0000956!3.37e-22!25;UBERON:0000203!3.37e-22!25;UBERON:0004121!1.22e-21!169;UBERON:0000924!7.31e-21!173;UBERON:0006601!7.31e-21!173;UBERON:0002619!4.01e-16!22;UBERON:0004733!1.30e-15!12;UBERON:0002028!1.30e-15!12;UBERON:0007277!1.30e-15!12;UBERON:0001950!4.08e-15!20;UBERON:0003076!7.16e-15!15;UBERON:0003057!7.16e-15!15;UBERON:0004732!2.85e-14!13;UBERON:0002680!3.73e-13!9;UBERON:0001895!3.73e-13!9;UBERON:0010092!3.73e-13!9;UBERON:0002308!5.24e-12!9;UBERON:0000125!5.24e-12!9;UBERON:0000025!2.94e-11!194;UBERON:0000200!1.50e-10!6;UBERON:0002298!5.13e-10!8;UBERON:0002420!2.67e-09!9;UBERON:0007245!2.67e-09!9;UBERON:0010009!2.67e-09!9;UBERON:0010011!2.67e-09!9;UBERON:0000454!2.67e-09!9;UBERON:0001894!1.17e-08!7;UBERON:0006222!1.17e-08!7;UBERON:0002771!1.27e-08!3;UBERON:0009663!1.88e-08!7;UBERON:0000064!3.55e-08!219;UBERON:0001871!3.71e-08!7;UBERON:0004111!8.32e-08!241;UBERON:0002037!1.18e-07!6;UBERON:0006215!1.18e-07!6;UBERON:0000988!1.91e-07!3;UBERON:0006331!2.36e-07!3;UBERON:0000477!4.25e-07!286;UBERON:0000483!6.99e-07!309|ontology_enrichment_uberon_v019=UBERON:0002037;3.22e-18;6!UBERON:0001764;2.32e-13;1!UBERON:0001825;2.32e-13;1!UBERON:0004911;8.15e-13;1!UBERON:0002680;2.36e-12;9!UBERON:0001895;2.36e-12;9!UBERON:0004733;2.10e-09;12!UBERON:0002028;2.10e-09;12!UBERON:0004732;1.01e-08;13!UBERON:0004909;4.83e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.32e-18,6;UBERON:0006215,3.32e-18,6;UBERON:0001764,2.32e-13,1;UBERON:0001825,2.32e-13,1;UBERON:0004911,9.73e-13,1;UBERON:0002680,2.41e-12,9;UBERON:0001895,2.41e-12,9;UBERON:0010092,2.41e-12,9;UBERON:0004733,2.13e-09,12;UBERON:0002028,2.13e-09,12;UBERON:0007277,2.13e-09,12;UBERON:0004732,1.03e-08,13;UBERON:0001017,3.72e-08,81;UBERON:0003076,1.28e-07,15;UBERON:0003057,1.28e-07,15;UBERON:0000955,1.33e-07,68;UBERON:0006238,1.33e-07,68;UBERON:0000073,1.83e-07,53;UBERON:0002616,1.83e-07,53;UBERON:0001016,2.86e-07,89;UBERON:0001049,4.74e-07,56;UBERON:0005068,4.74e-07,56;UBERON:0006241,4.74e-07,56;UBERON:0007135,4.74e-07,56;UBERON:0004909,5.28e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0,2.28988789704845,4.24310717725941,1.88313959392204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4897 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7994 | |||
|TSSclassifier=S | |||
|UniProt=C9JF43 | |||
|association_with_transcript=-67bp_to_ENST00000442580_5end | |||
|coexpression_cluster_id=C276 | |||
|description=CAGE_peak_10_at_NRCAM_5end | |||
|id=chr7:107968999..107969017,- | |||
|ontology_enrichment_celltype=CL:0000128!5.93e-10!7;CL:0000126!5.93e-10!7;CL:0000127!5.93e-10!7;CL:0002453!5.93e-10!7;CL:0002605!1.88e-09!3;CL:0002322!1.75e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002605;1.49e-35;3!CL:0000128;5.15e-27;7!CL:0000126;5.15e-27;7!CL:0000127;5.15e-27;7!CL:0000313;8.15e-13;1!CL:0000243;2.64e-11;15!CL:0000125;2.64e-11;15!CL:0002319;9.24e-11;25!CL:0000095;3.87e-10;17!CL:0000159;4.83e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.24e-35,3;CL:0000128,4.65e-27,7;CL:0000126,4.65e-27,7;CL:0000127,4.65e-27,7;CL:0002453,4.65e-27,7;CL:0000313,9.73e-13,1;CL:0000243,2.53e-11,15;CL:0000125,2.53e-11,15;CL:0000030,2.53e-11,15;CL:0000339,2.53e-11,15;CL:0002319,9.43e-11,25;CL:0000095,3.73e-10,17;CL:0000123,3.73e-10,17;CL:0000159,5.28e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.04e-35;3!CL:0000339;2.64e-11;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0050619;2.32e-13;1!DOID:1357;2.32e-13;1!DOID:5409;5.72e-13;4!DOID:2152;8.15e-13;1!DOID:1325;8.64e-08;7!DOID:3904;8.64e-08;7!DOID:0050615;2.59e-07;16!DOID:4468;4.83e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,2.32e-13,1;DOID:1357,2.32e-13,1;DOID:5409,5.39e-13,4;DOID:2152,9.73e-13,1;DOID:1325,8.35e-08,7;DOID:3904,8.35e-08,7;DOID:0050615,2.53e-07,16;DOID:4468,4.69e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.12e-53!57;UBERON:0005068!2.12e-53!57;UBERON:0006241!2.12e-53!57;UBERON:0007135!2.12e-53!57;UBERON:0001017!7.05e-50!82;UBERON:0000955!1.26e-49!69;UBERON:0006238!1.26e-49!69;UBERON:0005743!1.40e-49!86;UBERON:0002616!2.01e-48!59;UBERON:0000073!8.54e-44!94;UBERON:0001016!8.54e-44!94;UBERON:0003075!1.32e-42!86;UBERON:0007284!1.32e-42!86;UBERON:0002780!2.85e-40!41;UBERON:0001890!2.85e-40!41;UBERON:0006240!2.85e-40!41;UBERON:0002346!3.32e-40!90;UBERON:0003080!3.82e-39!42;UBERON:0003056!2.04e-33!61;UBERON:0001893!6.13e-33!34;UBERON:0002020!1.30e-32!34;UBERON:0003528!1.30e-32!34;UBERON:0000033!2.98e-31!123;UBERON:0002791!4.03e-31!33;UBERON:0000153!3.00e-29!129;UBERON:0007811!3.00e-29!129;UBERON:0001869!3.36e-29!32;UBERON:0007023!7.87e-26!115;UBERON:0000956!3.37e-22!25;UBERON:0000203!3.37e-22!25;UBERON:0004121!1.22e-21!169;UBERON:0000924!7.31e-21!173;UBERON:0006601!7.31e-21!173;UBERON:0002619!4.01e-16!22;UBERON:0004733!1.30e-15!12;UBERON:0002028!1.30e-15!12;UBERON:0007277!1.30e-15!12;UBERON:0001950!4.08e-15!20;UBERON:0003076!7.16e-15!15;UBERON:0003057!7.16e-15!15;UBERON:0004732!2.85e-14!13;UBERON:0002680!3.73e-13!9;UBERON:0001895!3.73e-13!9;UBERON:0010092!3.73e-13!9;UBERON:0002308!5.24e-12!9;UBERON:0000125!5.24e-12!9;UBERON:0000025!2.94e-11!194;UBERON:0000200!1.50e-10!6;UBERON:0002298!5.13e-10!8;UBERON:0002420!2.67e-09!9;UBERON:0007245!2.67e-09!9;UBERON:0010009!2.67e-09!9;UBERON:0010011!2.67e-09!9;UBERON:0000454!2.67e-09!9;UBERON:0001894!1.17e-08!7;UBERON:0006222!1.17e-08!7;UBERON:0002771!1.27e-08!3;UBERON:0009663!1.88e-08!7;UBERON:0000064!3.55e-08!219;UBERON:0001871!3.71e-08!7;UBERON:0004111!8.32e-08!241;UBERON:0002037!1.18e-07!6;UBERON:0006215!1.18e-07!6;UBERON:0000988!1.91e-07!3;UBERON:0006331!2.36e-07!3;UBERON:0000477!4.25e-07!286;UBERON:0000483!6.99e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;3.22e-18;6!UBERON:0001764;2.32e-13;1!UBERON:0001825;2.32e-13;1!UBERON:0004911;8.15e-13;1!UBERON:0002680;2.36e-12;9!UBERON:0001895;2.36e-12;9!UBERON:0004733;2.10e-09;12!UBERON:0002028;2.10e-09;12!UBERON:0004732;1.01e-08;13!UBERON:0004909;4.83e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.32e-18,6;UBERON:0006215,3.32e-18,6;UBERON:0001764,2.32e-13,1;UBERON:0001825,2.32e-13,1;UBERON:0004911,9.73e-13,1;UBERON:0002680,2.41e-12,9;UBERON:0001895,2.41e-12,9;UBERON:0010092,2.41e-12,9;UBERON:0004733,2.13e-09,12;UBERON:0002028,2.13e-09,12;UBERON:0007277,2.13e-09,12;UBERON:0004732,1.03e-08,13;UBERON:0001017,3.72e-08,81;UBERON:0003076,1.28e-07,15;UBERON:0003057,1.28e-07,15;UBERON:0000955,1.33e-07,68;UBERON:0006238,1.33e-07,68;UBERON:0000073,1.83e-07,53;UBERON:0002616,1.83e-07,53;UBERON:0001016,2.86e-07,89;UBERON:0001049,4.74e-07,56;UBERON:0005068,4.74e-07,56;UBERON:0006241,4.74e-07,56;UBERON:0007135,4.74e-07,56;UBERON:0004909,5.28e-07,2 | |||
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|short_description=p10@NRCAM | |||
}} |
Revision as of 22:42, 13 September 2013
Short description: | p10@NRCAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_NRCAM_5end |
Coexpression cluster: | C276_mesothelioma_kidney_renal_small_clear_cerebellum_Renal |
Association with transcript: | -67bp_to_ENST00000442580_5end |
EntrezGene: | NRCAM |
HGNC: | 7994 |
UniProt: | C9JF43 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.24e-35 | 3 |
oligodendrocyte | 4.65e-27 | 7 |
macroglial cell | 4.65e-27 | 7 |
astrocyte | 4.65e-27 | 7 |
oligodendrocyte precursor cell | 4.65e-27 | 7 |
serous secreting cell | 9.73e-13 | 1 |
glial cell (sensu Vertebrata) | 2.53e-11 | 15 |
glial cell | 2.53e-11 | 15 |
glioblast | 2.53e-11 | 15 |
glioblast (sensu Vertebrata) | 2.53e-11 | 15 |
neural cell | 9.43e-11 | 25 |
neuron associated cell | 3.73e-10 | 17 |
neuron associated cell (sensu Vertebrata) | 3.73e-10 | 17 |
seromucus secreting cell | 5.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.32e-18 | 6 |
rhombic lip | 3.32e-18 | 6 |
maxillary sinus | 2.32e-13 | 1 |
paranasal sinus | 2.32e-13 | 1 |
epithelium of female gonad | 9.73e-13 | 1 |
regional part of metencephalon | 2.41e-12 | 9 |
metencephalon | 2.41e-12 | 9 |
future metencephalon | 2.41e-12 | 9 |
segmental subdivision of hindbrain | 2.13e-09 | 12 |
hindbrain | 2.13e-09 | 12 |
presumptive hindbrain | 2.13e-09 | 12 |
segmental subdivision of nervous system | 1.03e-08 | 13 |
central nervous system | 3.72e-08 | 81 |
posterior neural tube | 1.28e-07 | 15 |
chordal neural plate | 1.28e-07 | 15 |
brain | 1.33e-07 | 68 |
future brain | 1.33e-07 | 68 |
regional part of nervous system | 1.83e-07 | 53 |
regional part of brain | 1.83e-07 | 53 |
nervous system | 2.86e-07 | 89 |
neural tube | 4.74e-07 | 56 |
neural rod | 4.74e-07 | 56 |
future spinal cord | 4.74e-07 | 56 |
neural keel | 4.74e-07 | 56 |
epithelium of gonad | 5.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 2.32e-13 | 1 |
maxillary sinus cancer | 2.32e-13 | 1 |
lung small cell carcinoma | 5.39e-13 | 4 |
ovary epithelial cancer | 9.73e-13 | 1 |
bronchus cancer | 8.35e-08 | 7 |
bronchogenic carcinoma | 8.35e-08 | 7 |
respiratory system cancer | 2.53e-07 | 16 |
clear cell adenocarcinoma | 4.69e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.