FFCP PHASE1:Hg19::chr7:142498815..142498839,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=90bp_to_AJ568018_5end|coexpression_cluster_id=C496|description=CAGE_peak_1_at_AJ568018_5end|id=chr7:142498815..142498839,+|ontology_enrichment_celltype=CL:0000542!5.60e-32!53;CL:0000051!5.60e-32!53;CL:0000838!5.68e-31!52;CL:0000084!7.03e-27!25;CL:0000827!7.03e-27!25;CL:0000791!1.62e-21!18;CL:0000789!1.62e-21!18;CL:0002420!1.62e-21!18;CL:0002419!1.62e-21!18;CL:0000790!1.62e-21!18;CL:0000738!7.61e-17!140;CL:0002087!1.95e-16!119;CL:0000625!4.73e-13!11;CL:0002031!1.62e-12!124;CL:0000988!6.76e-12!182;CL:0000037!1.04e-11!172;CL:0000566!1.04e-11!172;CL:0002032!4.40e-10!165;CL:0000837!4.40e-10!165;CL:0000624!3.60e-09!6|ontology_enrichment_celltype_v019=CL:0000084;9.57e-45;25!CL:0000791;3.18e-40;18!CL:0000789;3.18e-40;18!CL:0002419;3.18e-40;18!CL:0000625;9.23e-27;11!CL:0000542;1.27e-26;53!CL:0000624;1.00e-17;6!CL:0000898;1.12e-09;3!CL:0000236;1.79e-09;13!CL:0000226;2.60e-09;3!CL:0000842;2.60e-09;3!CL:0000623;5.75e-09;3!CL:0000815;4.95e-07;2!CL:0000792;4.95e-07;2!CL:0002677;4.95e-07;2!CL:0002087;6.13e-07;104|ontology_enrichment_celltype_v019_2=CL:0000084,7.24e-45,25;CL:0000827,7.24e-45,25;CL:0000838,5.05e-44,52;CL:0000542,4.91e-43,53;CL:0000051,4.91e-43,53;CL:0000791,2.88e-40,18;CL:0000789,2.88e-40,18;CL:0002420,2.88e-40,18;CL:0002419,2.88e-40,18;CL:0000790,2.88e-40,18;CL:0000625,1.02e-26,11;CL:0002087,1.03e-20,115;CL:0000624,8.04e-18,6;CL:0000738,1.56e-17,136;CL:0002031,1.51e-15,120;CL:0000037,1.52e-12,168;CL:0000988,2.20e-12,177;CL:0000898,1.00e-09,3;CL:0002032,1.14e-09,161;CL:0000837,1.14e-09,161;CL:0000226,3.54e-09,3;CL:0000842,3.54e-09,3;CL:0000623,6.10e-09,3;CL:0000825,6.10e-09,3;CL:0000236,7.37e-09,14;CL:0000815,4.39e-07,2;CL:0000792,4.39e-07,2;CL:0002677,4.39e-07,2|ontology_enrichment_development_v019=CL:0000790;3.18e-40;18!CL:0000051;1.27e-26;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!6.98e-13!15;UBERON:0000179!6.98e-13!15;UBERON:0000463!6.98e-13!15;UBERON:0004177!6.25e-07!7|ontology_enrichment_uberon_v019=UBERON:0000178;6.84e-17;15!UBERON:0000179;6.84e-17;15!UBERON:0000463;6.84e-17;15!UBERON:0002390;1.00e-09;32!UBERON:0002370;1.08e-07;2!UBERON:0005058;1.08e-07;2!UBERON:0009113;1.08e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.04e-16,15;UBERON:0000179,1.04e-16,15;UBERON:0000463,1.04e-16,15;UBERON:0002370,7.44e-08,4;UBERON:0005058,7.44e-08,4;UBERON:0009113,7.44e-08,4;UBERON:0003295,7.44e-08,4;UBERON:0005562,7.44e-08,4|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0.436882744260345,0.791300934685361,0,0,0,0,0,0,0,0.408001382488506,0,0,0,0,0.0764134057479513,0.246301768349837,0.157421562627358,0.393364276848904,0.767658796194425,0.154816123316076,0,0,0,0,0.426507697462265,0,0,0.601633342410425,0.651032612147555,0.671746422719773,1.94336199611388,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0.545812300115692,0.224723484445085,0,0,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,1.09227722252426,1.77901850772711,0,1.60158394814405,2.29900975981793,1.98313461835459,1.90810750907073,0,0,0,0,0.560508562981536,0.526768169550154,2.16380747125216,5.89516144123747,4.93443597598822,7.69057878797119,2.60737813306872,2.8406868344084,5.84480185223734,6.12757512868455,5.89211814949674,4.87374568083967,7.04090045789041,6.40456598628376,5.20237390239513,8.55077103939116,8.5668505513613,7.53488022911136,4.89345658434799,5.61835738988397,6.27213142829861,6.68525121915641,3.44898444241729,4.12352934579156,5.06039384039006,6.37130828648194,0,3.8018081777935,9.03450714466637,8.95906278080929,3.74792179657038,5.44587679701239,4.10563998460523,3.42731463482045,6.15112450302067,4.63438092424957,0,0,0,0,0,0,0,0,0,0,0.263504357079378,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,1.13061588384802,1.67799774483962,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0.367663080345869,0.81014194788176,0.535798369704479,0.22452937262617,0.225222960966644,0,0.949265659568129,0.549605231791222,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,8.38779888887836,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0.621984346622316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672510863961164,1.37921532141349,2.58753089831421,1.54011643535698,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.13536052245775,1.07857100409308,2.45473382947922,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0.519254429183621,0,0,0.200506470303285,0,0.68888668898764,0,0,0,0,0,1.46139224653261,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=90bp_to_AJ568018_5end | |||
|coexpression_cluster_id=C496 | |||
|description=CAGE_peak_1_at_AJ568018_5end | |||
|id=chr7:142498815..142498839,+ | |||
|ontology_enrichment_celltype=CL:0000542!5.60e-32!53;CL:0000051!5.60e-32!53;CL:0000838!5.68e-31!52;CL:0000084!7.03e-27!25;CL:0000827!7.03e-27!25;CL:0000791!1.62e-21!18;CL:0000789!1.62e-21!18;CL:0002420!1.62e-21!18;CL:0002419!1.62e-21!18;CL:0000790!1.62e-21!18;CL:0000738!7.61e-17!140;CL:0002087!1.95e-16!119;CL:0000625!4.73e-13!11;CL:0002031!1.62e-12!124;CL:0000988!6.76e-12!182;CL:0000037!1.04e-11!172;CL:0000566!1.04e-11!172;CL:0002032!4.40e-10!165;CL:0000837!4.40e-10!165;CL:0000624!3.60e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;9.57e-45;25!CL:0000791;3.18e-40;18!CL:0000789;3.18e-40;18!CL:0002419;3.18e-40;18!CL:0000625;9.23e-27;11!CL:0000542;1.27e-26;53!CL:0000624;1.00e-17;6!CL:0000898;1.12e-09;3!CL:0000236;1.79e-09;13!CL:0000226;2.60e-09;3!CL:0000842;2.60e-09;3!CL:0000623;5.75e-09;3!CL:0000815;4.95e-07;2!CL:0000792;4.95e-07;2!CL:0002677;4.95e-07;2!CL:0002087;6.13e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,7.24e-45,25;CL:0000827,7.24e-45,25;CL:0000838,5.05e-44,52;CL:0000542,4.91e-43,53;CL:0000051,4.91e-43,53;CL:0000791,2.88e-40,18;CL:0000789,2.88e-40,18;CL:0002420,2.88e-40,18;CL:0002419,2.88e-40,18;CL:0000790,2.88e-40,18;CL:0000625,1.02e-26,11;CL:0002087,1.03e-20,115;CL:0000624,8.04e-18,6;CL:0000738,1.56e-17,136;CL:0002031,1.51e-15,120;CL:0000037,1.52e-12,168;CL:0000988,2.20e-12,177;CL:0000898,1.00e-09,3;CL:0002032,1.14e-09,161;CL:0000837,1.14e-09,161;CL:0000226,3.54e-09,3;CL:0000842,3.54e-09,3;CL:0000623,6.10e-09,3;CL:0000825,6.10e-09,3;CL:0000236,7.37e-09,14;CL:0000815,4.39e-07,2;CL:0000792,4.39e-07,2;CL:0002677,4.39e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;3.18e-40;18!CL:0000051;1.27e-26;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!6.98e-13!15;UBERON:0000179!6.98e-13!15;UBERON:0000463!6.98e-13!15;UBERON:0004177!6.25e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.84e-17;15!UBERON:0000179;6.84e-17;15!UBERON:0000463;6.84e-17;15!UBERON:0002390;1.00e-09;32!UBERON:0002370;1.08e-07;2!UBERON:0005058;1.08e-07;2!UBERON:0009113;1.08e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.04e-16,15;UBERON:0000179,1.04e-16,15;UBERON:0000463,1.04e-16,15;UBERON:0002370,7.44e-08,4;UBERON:0005058,7.44e-08,4;UBERON:0009113,7.44e-08,4;UBERON:0003295,7.44e-08,4;UBERON:0005562,7.44e-08,4 | |||
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|short_description=p1@AJ568018 | |||
}} |
Revision as of 23:42, 13 September 2013
Short description: | p1@AJ568018 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_AJ568018_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | 90bp_to_AJ568018_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 7.24e-45 | 25 |
pro-T cell | 7.24e-45 | 25 |
lymphoid lineage restricted progenitor cell | 5.05e-44 | 52 |
lymphocyte | 4.91e-43 | 53 |
common lymphoid progenitor | 4.91e-43 | 53 |
mature alpha-beta T cell | 2.88e-40 | 18 |
alpha-beta T cell | 2.88e-40 | 18 |
immature T cell | 2.88e-40 | 18 |
mature T cell | 2.88e-40 | 18 |
immature alpha-beta T cell | 2.88e-40 | 18 |
CD8-positive, alpha-beta T cell | 1.02e-26 | 11 |
nongranular leukocyte | 1.03e-20 | 115 |
CD4-positive, alpha-beta T cell | 8.04e-18 | 6 |
leukocyte | 1.56e-17 | 136 |
hematopoietic lineage restricted progenitor cell | 1.51e-15 | 120 |
hematopoietic stem cell | 1.52e-12 | 168 |
hematopoietic cell | 2.20e-12 | 177 |
naive T cell | 1.00e-09 | 3 |
hematopoietic oligopotent progenitor cell | 1.14e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.14e-09 | 161 |
single nucleate cell | 3.54e-09 | 3 |
mononuclear cell | 3.54e-09 | 3 |
natural killer cell | 6.10e-09 | 3 |
pro-NK cell | 6.10e-09 | 3 |
B cell | 7.37e-09 | 14 |
regulatory T cell | 4.39e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.39e-07 | 2 |
naive regulatory T cell | 4.39e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 1.04e-16 | 15 |
haemolymphatic fluid | 1.04e-16 | 15 |
organism substance | 1.04e-16 | 15 |
thymus | 7.44e-08 | 4 |
hemolymphoid system gland | 7.44e-08 | 4 |
thymic region | 7.44e-08 | 4 |
pharyngeal gland | 7.44e-08 | 4 |
thymus primordium | 7.44e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.