FFCP PHASE1:Mm9::chr2:51928619..51928661,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=51869|HGNC=|MCL_coexpression_id=0|UniProt=|association_with_transcript=27bp_to_ENSMUST00000126218_5end|description=CAGE_peak_3_at_Rif1_5end|id=chr2:51928619..51928661,+|ontology_enrichment_celltype=CL:0000838!8.02e-08!12;CL:0000084!2.26e-07!11;CL:0000827!2.26e-07!11;CL:0000791!5.73e-07!9;CL:0000789!5.73e-07!9;CL:0002420!5.73e-07!9;CL:0002419!5.73e-07!9;CL:0000790!5.73e-07!9|ontology_enrichment_celltype_v019_2=CL:0000791,1.41e-20,9;CL:0000789,1.41e-20,9;CL:0002420,1.41e-20,9;CL:0002419,1.41e-20,9;CL:0000790,1.41e-20,9;CL:0000624,3.82e-18,8;CL:0000084,1.55e-16,11;CL:0000827,1.55e-16,11;CL:0000838,5.09e-15,12;CL:0000893,2.82e-14,6;CL:0002489,2.82e-14,6;CL:0000898,2.82e-14,6;CL:0000809,2.82e-14,6;CL:0000810,2.82e-14,6;CL:0000895,2.82e-14,6;CL:0000808,2.82e-14,6;CL:0000894,2.82e-14,6;CL:0000806,2.82e-14,6;CL:0000807,2.82e-14,6;CL:0000805,2.82e-14,6;CL:0002425,2.82e-14,6;CL:0002436,2.82e-14,6;CL:0002427,2.82e-14,6;CL:0002428,2.82e-14,6;CL:0002429,2.82e-14,6;CL:0002433,2.82e-14,6;CL:0002431,2.82e-14,6;CL:0002432,2.82e-14,6;CL:0000542,9.76e-14,13;CL:0000051,9.76e-14,13;CL:0000738,4.05e-10,17;CL:0002087,4.05e-10,17;CL:0002031,7.49e-08,25;CL:0000988,4.46e-07,32;CL:0002032,4.46e-07,32;CL:0000037,4.46e-07,32;CL:0000837,4.46e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003408!8.51e-10!24;UBERON:0002370!3.95e-09!23;UBERON:0000974!3.95e-09!23;UBERON:0004807!3.95e-09!23;UBERON:0005058!3.95e-09!23;UBERON:0003351!3.95e-09!23;UBERON:0009113!3.95e-09!23;UBERON:0003295!3.95e-09!23;UBERON:0009722!3.95e-09!23;UBERON:0005562!3.95e-09!23;UBERON:0007690!3.95e-09!23;UBERON:0006562!2.76e-08!24;UBERON:0001557!2.76e-08!24;UBERON:0001042!2.76e-08!24;UBERON:0008814!2.76e-08!24;UBERON:0009145!2.76e-08!24;UBERON:0004177!4.13e-08!29;UBERON:0000072!5.28e-08!27;UBERON:0001004!3.94e-07!42|ontology_enrichment_uberon_v019_2=UBERON:0003408,2.99e-26,24;UBERON:0002370,5.27e-24,23;UBERON:0000974,5.27e-24,23;UBERON:0004807,5.27e-24,23;UBERON:0005058,5.27e-24,23;UBERON:0003351,5.27e-24,23;UBERON:0009113,5.27e-24,23;UBERON:0003295,5.27e-24,23;UBERON:0009722,5.27e-24,23;UBERON:0005562,5.27e-24,23;UBERON:0007690,5.27e-24,23;UBERON:0006562,7.53e-23,24;UBERON:0001557,7.53e-23,24;UBERON:0001042,7.53e-23,24;UBERON:0008814,7.53e-23,24;UBERON:0009145,7.53e-23,24;UBERON:0000072,6.74e-20,27;UBERON:0004177,2.86e-18,29;UBERON:0005057,2.86e-18,29;UBERON:0007811,3.58e-16,36;UBERON:0000077,1.66e-14,35;UBERON:0002193,3.02e-14,48;UBERON:0002405,3.02e-14,48;UBERON:0002390,1.09e-13,45;UBERON:0003061,1.09e-13,45;UBERON:0001004,2.66e-13,42;UBERON:0000153,6.69e-13,43;UBERON:0000065,7.47e-12,41;UBERON:0002530,1.87e-09,65;UBERON:0003929,4.01e-09,55;UBERON:0002368,4.71e-08,60;UBERON:0000490,5.46e-07,66|phase1_expression=0.160148847104794,0.348975407639361,0.454999239389536,0.60492842261366,0,0.33575854382378,0.700837921786577,1.16210991097419,2.81577444303333,3.97909694747389,1.19852577757853,1.19658238493005,1.71200729931206,1.13646523144697,0.333109761815663,0.404950534779652,0,0.630924330716475,1.23402990245165,0.42438965179803,21.2608225377674,0.397163804803541,0.783599367416806,0.159992422793407,0,0,0.430761996159075,0.646413698057667,0.760093677825496,0.252030129759931,0.221730510655305,0.635030673459631,0,0,0.866554859253824,0.498703936075477,0.816677425049476,0.418531630736908,0,0.523523743973798,0,0.683045484958446,0,0,0,0,0,0,0,0.194429899074283,0,0,0.838913030288682,1.45072428402269,2.68875039313971,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0,0,0,0,0.383062014255563,0.307213066512487,0,0,0,0.279182999001381,0.56276261003168,0.45839474333043,0.883885756421003,0.142371680799103,0,0,0.0755715601067855,0,0,0,0,0,0,1.96622188184453,0.170430322578058,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,0,0.505524445014783,2.16949371466214,1.55362730188303,0.148442139064825,0,0,0,0,0.117588707135705,0,0.988779870937496,0.289198713839823,1.76922110389975,0,0.220841518460394,0.484875253135222,0,1.17112318804619,0.41889341362691,1.02182822083437,0.718890747035522,0,0.254140454146129,0.449371918214468,0,0,0.173824320192276,0,0.62336413367868,0,0.407357455401265,0,0.505445516867349,0.841767423545896,0.130120442962704,0,0.180062129805349,0,0.272145996605311,0.12811372028485,0.187403449119458,0.258703370739016,0,0.189106080167819,0,0,0.278047249225598,0,0,0,2.1066395619397,0.51469581422943,0.284163499395593,0,0,0.180062061461015,0,0.196764231747404,0.462801338662135,0,0,0.116765342367169,0,0,0.162137619091711,0.146199987425332,0,0,0.210289948564127,0,0.330418782983798,0.528901133327089,0,0,0.128867461322093,0.403367049246685,0.22237804384487,0.190225626112559,0.949058123089023,0.329397909448022,0,0.198956472041151,0.19496408711912,0.898819408654221,0,0.398282546508734,0,0.228497025219458,1.1270773567308,0.203651327845314,0.193952487167626,0.561086559122548,0.316182685621286,0.295220295959204,0.470996183524124,0.616985819609003,0.592905254174298,0.166845105716094,0.196558995113203,0,0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| ||
|EntrezGene=51869 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt= | |||
|association_with_transcript=27bp_to_ENSMUST00000126218_5end | |||
|description=CAGE_peak_3_at_Rif1_5end | |||
|id=chr2:51928619..51928661,+ | |||
|ontology_enrichment_celltype=CL:0000838!8.02e-08!12;CL:0000084!2.26e-07!11;CL:0000827!2.26e-07!11;CL:0000791!5.73e-07!9;CL:0000789!5.73e-07!9;CL:0002420!5.73e-07!9;CL:0002419!5.73e-07!9;CL:0000790!5.73e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.41e-20,9;CL:0000789,1.41e-20,9;CL:0002420,1.41e-20,9;CL:0002419,1.41e-20,9;CL:0000790,1.41e-20,9;CL:0000624,3.82e-18,8;CL:0000084,1.55e-16,11;CL:0000827,1.55e-16,11;CL:0000838,5.09e-15,12;CL:0000893,2.82e-14,6;CL:0002489,2.82e-14,6;CL:0000898,2.82e-14,6;CL:0000809,2.82e-14,6;CL:0000810,2.82e-14,6;CL:0000895,2.82e-14,6;CL:0000808,2.82e-14,6;CL:0000894,2.82e-14,6;CL:0000806,2.82e-14,6;CL:0000807,2.82e-14,6;CL:0000805,2.82e-14,6;CL:0002425,2.82e-14,6;CL:0002436,2.82e-14,6;CL:0002427,2.82e-14,6;CL:0002428,2.82e-14,6;CL:0002429,2.82e-14,6;CL:0002433,2.82e-14,6;CL:0002431,2.82e-14,6;CL:0002432,2.82e-14,6;CL:0000542,9.76e-14,13;CL:0000051,9.76e-14,13;CL:0000738,4.05e-10,17;CL:0002087,4.05e-10,17;CL:0002031,7.49e-08,25;CL:0000988,4.46e-07,32;CL:0002032,4.46e-07,32;CL:0000037,4.46e-07,32;CL:0000837,4.46e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003408!8.51e-10!24;UBERON:0002370!3.95e-09!23;UBERON:0000974!3.95e-09!23;UBERON:0004807!3.95e-09!23;UBERON:0005058!3.95e-09!23;UBERON:0003351!3.95e-09!23;UBERON:0009113!3.95e-09!23;UBERON:0003295!3.95e-09!23;UBERON:0009722!3.95e-09!23;UBERON:0005562!3.95e-09!23;UBERON:0007690!3.95e-09!23;UBERON:0006562!2.76e-08!24;UBERON:0001557!2.76e-08!24;UBERON:0001042!2.76e-08!24;UBERON:0008814!2.76e-08!24;UBERON:0009145!2.76e-08!24;UBERON:0004177!4.13e-08!29;UBERON:0000072!5.28e-08!27;UBERON:0001004!3.94e-07!42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003408,2.99e-26,24;UBERON:0002370,5.27e-24,23;UBERON:0000974,5.27e-24,23;UBERON:0004807,5.27e-24,23;UBERON:0005058,5.27e-24,23;UBERON:0003351,5.27e-24,23;UBERON:0009113,5.27e-24,23;UBERON:0003295,5.27e-24,23;UBERON:0009722,5.27e-24,23;UBERON:0005562,5.27e-24,23;UBERON:0007690,5.27e-24,23;UBERON:0006562,7.53e-23,24;UBERON:0001557,7.53e-23,24;UBERON:0001042,7.53e-23,24;UBERON:0008814,7.53e-23,24;UBERON:0009145,7.53e-23,24;UBERON:0000072,6.74e-20,27;UBERON:0004177,2.86e-18,29;UBERON:0005057,2.86e-18,29;UBERON:0007811,3.58e-16,36;UBERON:0000077,1.66e-14,35;UBERON:0002193,3.02e-14,48;UBERON:0002405,3.02e-14,48;UBERON:0002390,1.09e-13,45;UBERON:0003061,1.09e-13,45;UBERON:0001004,2.66e-13,42;UBERON:0000153,6.69e-13,43;UBERON:0000065,7.47e-12,41;UBERON:0002530,1.87e-09,65;UBERON:0003929,4.01e-09,55;UBERON:0002368,4.71e-08,60;UBERON:0000490,5.46e-07,66 | |||
|phase1_expression=0.160148847104794,0.348975407639361,0.454999239389536,0.60492842261366,0,0.33575854382378,0.700837921786577,1.16210991097419,2.81577444303333,3.97909694747389,1.19852577757853,1.19658238493005,1.71200729931206,1.13646523144697,0.333109761815663,0.404950534779652,0,0.630924330716475,1.23402990245165,0.42438965179803,21.2608225377674,0.397163804803541,0.783599367416806,0.159992422793407,0,0,0.430761996159075,0.646413698057667,0.760093677825496,0.252030129759931,0.221730510655305,0.635030673459631,0,0,0.866554859253824,0.498703936075477,0.816677425049476,0.418531630736908,0,0.523523743973798,0,0.683045484958446,0,0,0,0,0,0,0,0.194429899074283,0,0,0.838913030288682,1.45072428402269,2.68875039313971,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0,0,0,0,0.383062014255563,0.307213066512487,0,0,0,0.279182999001381,0.56276261003168,0.45839474333043,0.883885756421003,0.142371680799103,0,0,0.0755715601067855,0,0,0,0,0,0,1.96622188184453,0.170430322578058,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,0,0.505524445014783,2.16949371466214,1.55362730188303,0.148442139064825,0,0,0,0,0.117588707135705,0,0.988779870937496,0.289198713839823,1.76922110389975,0,0.220841518460394,0.484875253135222,0,1.17112318804619,0.41889341362691,1.02182822083437,0.718890747035522,0,0.254140454146129,0.449371918214468,0,0,0.173824320192276,0,0.62336413367868,0,0.407357455401265,0,0.505445516867349,0.841767423545896,0.130120442962704,0,0.180062129805349,0,0.272145996605311,0.12811372028485,0.187403449119458,0.258703370739016,0,0.189106080167819,0,0,0.278047249225598,0,0,0,2.1066395619397,0.51469581422943,0.284163499395593,0,0,0.180062061461015,0,0.196764231747404,0.462801338662135,0,0,0.116765342367169,0,0,0.162137619091711,0.146199987425332,0,0,0.210289948564127,0,0.330418782983798,0.528901133327089,0,0,0.128867461322093,0.403367049246685,0.22237804384487,0.190225626112559,0.949058123089023,0.329397909448022,0,0.198956472041151,0.19496408711912,0.898819408654221,0,0.398282546508734,0,0.228497025219458,1.1270773567308,0.203651327845314,0.193952487167626,0.561086559122548,0.316182685621286,0.295220295959204,0.470996183524124,0.616985819609003,0.592905254174298,0.166845105716094,0.196558995113203,0,0.202860121388503,0,0.50925170356284,0.575392274901621,0.162135226775035,0,1.43768206527355,0.744281895337007,0.312037673114561,0.252578877947112,0.538192240565737,0,0.554259570499814,0.189491411770485,0.325929952884052,0,0.469380496577004,0.167506257441816,0.238043640886014,0.195133647857799,0,0.221464689648775,0.318909537314974,0.327726629431476,0.172684981865896,0.144649058581512,0,0,1.47529281905711,0.275936746304732,0,0.234423373184406,0.163934945376675,0,0.315508219416257,0,0,0,0.445597348164788,0,0,0,0,0,0.425820255624806,0.534196811001766,0.162886959353576,0.329940245945071,0,0.485561272309963,0,0,0.295301892880773,0,0.516856586336442,0,0,0,0,0,0.340439605753788,0.18006109403131,0,0.214337035031592,0.177340233642274,0.178368817602071,0.987294123612726,0,0.23467170806371,0.21183207086382,0.220528398054962,0.16488625294148,0,0,0,0.492422699235184,0.582961673259701,0,0.170870880797853,0,0.555583582109135,0.565105371014073,0.410082683163076,0,1.35982743995084,0.559805809294632,0.414599921413271,0,0.158167996790568,0.203319467126849,0.324016022465404,0.418176592028937,0.218362563746178,0.404593039154462,0.330613822901344,0,0.129614973291793,3.10669656543463,86.2450196186811,0.747582730219894,0.496375471371293,0.388902376688095,0,0.337912250981556,0.938857909166032,0,1.46803082195995,73.9247409727578,70.8553815394349,1.26404448251271,0.405450430580328,0.410843828659309,0.649604114888975,2.14832034800978,0.79472541912506,2.40390899039938,1.47689527174577,1.61546319917036,1.295515713135,1.00826185136841,1.65678397257579,2.11666051608725,2.22066114144981,0,0.443971906748129,0.269141569828427,0.335769232728157,0,0.375364950902364,0.183151624267265,0,0.501572104035363,0,0,0,0,0,0,0,0,0.453142408984205,0,0,0,0,0,0,0,0,0,0,0.252697211763798,0.25347929989024,0.377252682772152,0.187283014939765,0.192075457214608,0.34461281373368,0,0,0.38581844092741,0,0.441596760403192,0.342869252385415,0.354951612318675,0,0.145346416632329,0.0941093804153306,0.169229215783353,0,0.263069711437843,0.543216455383447,0.561142271657738,0.355905054372522,0.0985044823755635,0,0.309873682371932,0.192906610981141,0.249810577937946,0.233931608445408,0,0,0,0.463735671240843 | |||
|short_description=p3@Rif1 | |||
}} |
Revision as of 00:05, 14 September 2013
Short description: | p3@Rif1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rif1_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 27bp_to_ENSMUST00000126218_5end |
EntrezGene: | Rif1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gland of gut | 2.99e-26 | 24 |
thymus | 5.27e-24 | 23 |
neck | 5.27e-24 | 23 |
respiratory system epithelium | 5.27e-24 | 23 |
hemolymphoid system gland | 5.27e-24 | 23 |
pharyngeal epithelium | 5.27e-24 | 23 |
thymic region | 5.27e-24 | 23 |
pharyngeal gland | 5.27e-24 | 23 |
entire pharyngeal arch endoderm | 5.27e-24 | 23 |
thymus primordium | 5.27e-24 | 23 |
early pharyngeal endoderm | 5.27e-24 | 23 |
pharynx | 7.53e-23 | 24 |
upper respiratory tract | 7.53e-23 | 24 |
chordate pharynx | 7.53e-23 | 24 |
pharyngeal arch system | 7.53e-23 | 24 |
pharyngeal region of foregut | 7.53e-23 | 24 |
segment of respiratory tract | 6.74e-20 | 27 |
hemopoietic organ | 2.86e-18 | 29 |
immune organ | 2.86e-18 | 29 |
craniocervical region | 3.58e-16 | 36 |
mixed endoderm/mesoderm-derived structure | 1.66e-14 | 35 |
hemolymphoid system | 3.02e-14 | 48 |
immune system | 3.02e-14 | 48 |
hematopoietic system | 1.09e-13 | 45 |
blood island | 1.09e-13 | 45 |
respiratory system | 2.66e-13 | 42 |
anterior region of body | 6.69e-13 | 43 |
respiratory tract | 7.47e-12 | 41 |
gland | 1.87e-09 | 65 |
gut epithelium | 4.01e-09 | 55 |
endocrine gland | 4.71e-08 | 60 |
unilaminar epithelium | 5.46e-07 | 66 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.