FFCP PHASE1:Mm9::chr2:79296783..79296801,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18012|HGNC=|MCL_coexpression_id=403|UniProt=B1AYM8,Q60867|association_with_transcript=0bp_to_NM_010894,uc008kgt.1_5end|description=CAGE_peak_1_at_Neurod1_5end|id=chr2:79296783..79296801,-|ontology_enrichment_celltype=CL:0000117!9.16e-09!23;CL:0000337!9.16e-09!23|ontology_enrichment_celltype_v019_2=CL:0000117,8.65e-09,23;CL:0000337,8.65e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!1.57e-20!49;UBERON:0000033!2.49e-18!63;UBERON:0002346!5.91e-17!71;UBERON:0003075!5.91e-17!71;UBERON:0007284!5.91e-17!71;UBERON:0001049!3.99e-15!52;UBERON:0005068!3.99e-15!52;UBERON:0006241!3.99e-15!52;UBERON:0007135!3.99e-15!52;UBERON:0000955!5.00e-14!50;UBERON:0006238!5.00e-14!50;UBERON:0002780!8.28e-14!39;UBERON:0001890!8.28e-14!39;UBERON:0006240!8.28e-14!39;UBERON:0003080!9.01e-14!40;UBERON:0002616!1.54e-13!49;UBERON:0001017!1.82e-12!73;UBERON:0005743!1.82e-12!73;UBERON:0000073!2.18e-12!75;UBERON:0001016!2.18e-12!75;UBERON:0004121!4.03e-11!102;UBERON:0000924!4.03e-11!102;UBERON:0006601!4.03e-11!102;UBERON:0002020!8.89e-11!34;UBERON:0000160!6.17e-10!43;UBERON:0002791!7.42e-10!29;UBERON:0003528!7.42e-10!29;UBERON:0001893!7.42e-10!29;UBERON:0000970!2.38e-08!9;UBERON:0000019!2.38e-08!9;UBERON:0000047!2.38e-08!9;UBERON:0004088!2.38e-08!9;UBERON:0002104!2.38e-08!9;UBERON:0001456!2.38e-08!9;UBERON:0003072!2.38e-08!9;UBERON:0003071!2.38e-08!9;UBERON:0004128!2.38e-08!9;UBERON:0007811!4.40e-08!86;UBERON:0005409!8.64e-08!59;UBERON:0002108!2.11e-07!16;UBERON:0000956!2.64e-07!21;UBERON:0001869!2.64e-07!21;UBERON:0000203!2.64e-07!21;UBERON:0001264!7.45e-07!12;UBERON:0003922!7.45e-07!12;UBERON:0002114!7.45e-07!12;UBERON:0003923!7.45e-07!12;UBERON:0003924!7.45e-07!12;UBERON:0003921!7.45e-07!12;UBERON:0001045!8.19e-07!13|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.39e-21,64;UBERON:0003075,1.39e-21,64;UBERON:0007284,1.39e-21,64;UBERON:0003056,1.82e-21,49;UBERON:0010371,3.29e-16,73;UBERON:0001049,7.28e-16,52;UBERON:0005068,7.28e-16,52;UBERON:0006241,7.28e-16,52;UBERON:0007135,7.28e-16,52;UBERON:0000073,2.23e-15,54;UBERON:0000955,2.94e-15,47;UBERON:0006238,2.94e-15,47;UBERON:0002616,9.98e-15,46;UBERON:0002780,2.79e-14,39;UBERON:0001890,2.79e-14,39;UBERON:0006240,2.79e-14,39;UBERON:0003080,3.02e-14,40;UBERON:0004121,6.07e-12,95;UBERON:0000924,6.07e-12,95;UBERON:0006601,6.07e-12,95;UBERON:0001017,2.11e-11,73;UBERON:0002020,4.73e-11,34;UBERON:0001016,1.25e-10,75;UBERON:0003528,4.75e-10,29;UBERON:0002791,4.75e-10,29;UBERON:0001893,4.75e-10,29;UBERON:0000970,7.06e-09,9;UBERON:0000019,7.06e-09,9;UBERON:0000047,7.06e-09,9;UBERON:0010312,7.06e-09,9;UBERON:0004088,7.06e-09,9;UBERON:0002104,7.06e-09,9;UBERON:0001456,7.06e-09,9;UBERON:0003072,7.06e-09,9;UBERON:0004128,7.06e-09,9;UBERON:0003071,7.06e-09,9;UBERON:0010314,8.14e-09,92;UBERON:0000956,6.96e-08,21;UBERON:0001869,6.96e-08,21;UBERON:0000203,6.96e-08,21;UBERON:0001264,2.88e-07,12|phase1_expression=0.160148847104794,1.04692622291808,0.909998478779072,0,0,34.0794921981136,43.2183385101723,0,0,0,0,0,0,0,0,0,0,0,0,0,21.4309091180696,0,0,6.07971206614945,4.81759490241057,3.44539178469012,3.4460959692726,8.40337807474967,5.13063232532209,5.04060259519861,6.65191531965914,0,0,0,1.44425809875637,2.1610503896604,1.22501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.0123300330084,33.8554226734101,20.2826049121977,0,0,0,0,0,0,0,43.6533267818691,35.6415677195663,41.2236924248709,2.85650984403804,3.53389665522582,20.7009450673272,19.073248732629,16.5459381589804,0,4.46905683298157,1.53606533256243,15.5625819521629,15.2784364816024,16.1483144872596,39.6439858581961,0.56276261003168,2.29197371665215,3.83017161115768,8.39992916714707,10.8111678578674,0.151452386666368,0.151143120213571,0,0,0,0,0,0,6.17955448579708,0,0,0,0,0,0,0,0,0,0,5.82337786567206,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,3.72783522436244,752.739429116688,670.857801923497,6.38642638021478,0,0,0,1.3481157546434,5.03250663100489,9.67538511269056,5.73620256634512,4.85859368927628,4.98691306942944,4.54275536589721,0,0,0,89.6482306076379,29.9277018814219,51.9578756019649,102.815476118854,147.992131114672,205.810409932767,458.775232340047,482.189074584365,287.419444891046,0,0,0,0,0,0,0,0.796137067273973,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0,0,15.1408762966172,196.856523481571,11.5646574044329,7.40461586657924,0.426576501070468,0.696710015581316,3.99489130098489,6.05050573870028,4.89231696458715,4.94586627892654,7.59246498471219,5.59976446061637,4.27269854960458,3.78017296878187,4.48417400373976,8.08937467788799,6.48414149624083,5.97423819763102,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0.393117990226406,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,1.13694847062291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0137647496948,5.39173758324135,0,0,1.26203287766503,0.780877488593277,0,0.238968797952552,0.445597348164788,0,0,0.584511715822624,0,11.5675673911851,0,0,0.162886959353576,0,6.63725691699814,28.4053344301328,23.8835610002153,24.14145020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| ||
|EntrezGene=18012 | |||
|HGNC= | |||
|MCL_coexpression_id=403 | |||
|UniProt=B1AYM8,Q60867 | |||
|association_with_transcript=0bp_to_NM_010894,uc008kgt.1_5end | |||
|description=CAGE_peak_1_at_Neurod1_5end | |||
|id=chr2:79296783..79296801,- | |||
|ontology_enrichment_celltype=CL:0000117!9.16e-09!23;CL:0000337!9.16e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.65e-09,23;CL:0000337,8.65e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!1.57e-20!49;UBERON:0000033!2.49e-18!63;UBERON:0002346!5.91e-17!71;UBERON:0003075!5.91e-17!71;UBERON:0007284!5.91e-17!71;UBERON:0001049!3.99e-15!52;UBERON:0005068!3.99e-15!52;UBERON:0006241!3.99e-15!52;UBERON:0007135!3.99e-15!52;UBERON:0000955!5.00e-14!50;UBERON:0006238!5.00e-14!50;UBERON:0002780!8.28e-14!39;UBERON:0001890!8.28e-14!39;UBERON:0006240!8.28e-14!39;UBERON:0003080!9.01e-14!40;UBERON:0002616!1.54e-13!49;UBERON:0001017!1.82e-12!73;UBERON:0005743!1.82e-12!73;UBERON:0000073!2.18e-12!75;UBERON:0001016!2.18e-12!75;UBERON:0004121!4.03e-11!102;UBERON:0000924!4.03e-11!102;UBERON:0006601!4.03e-11!102;UBERON:0002020!8.89e-11!34;UBERON:0000160!6.17e-10!43;UBERON:0002791!7.42e-10!29;UBERON:0003528!7.42e-10!29;UBERON:0001893!7.42e-10!29;UBERON:0000970!2.38e-08!9;UBERON:0000019!2.38e-08!9;UBERON:0000047!2.38e-08!9;UBERON:0004088!2.38e-08!9;UBERON:0002104!2.38e-08!9;UBERON:0001456!2.38e-08!9;UBERON:0003072!2.38e-08!9;UBERON:0003071!2.38e-08!9;UBERON:0004128!2.38e-08!9;UBERON:0007811!4.40e-08!86;UBERON:0005409!8.64e-08!59;UBERON:0002108!2.11e-07!16;UBERON:0000956!2.64e-07!21;UBERON:0001869!2.64e-07!21;UBERON:0000203!2.64e-07!21;UBERON:0001264!7.45e-07!12;UBERON:0003922!7.45e-07!12;UBERON:0002114!7.45e-07!12;UBERON:0003923!7.45e-07!12;UBERON:0003924!7.45e-07!12;UBERON:0003921!7.45e-07!12;UBERON:0001045!8.19e-07!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.39e-21,64;UBERON:0003075,1.39e-21,64;UBERON:0007284,1.39e-21,64;UBERON:0003056,1.82e-21,49;UBERON:0010371,3.29e-16,73;UBERON:0001049,7.28e-16,52;UBERON:0005068,7.28e-16,52;UBERON:0006241,7.28e-16,52;UBERON:0007135,7.28e-16,52;UBERON:0000073,2.23e-15,54;UBERON:0000955,2.94e-15,47;UBERON:0006238,2.94e-15,47;UBERON:0002616,9.98e-15,46;UBERON:0002780,2.79e-14,39;UBERON:0001890,2.79e-14,39;UBERON:0006240,2.79e-14,39;UBERON:0003080,3.02e-14,40;UBERON:0004121,6.07e-12,95;UBERON:0000924,6.07e-12,95;UBERON:0006601,6.07e-12,95;UBERON:0001017,2.11e-11,73;UBERON:0002020,4.73e-11,34;UBERON:0001016,1.25e-10,75;UBERON:0003528,4.75e-10,29;UBERON:0002791,4.75e-10,29;UBERON:0001893,4.75e-10,29;UBERON:0000970,7.06e-09,9;UBERON:0000019,7.06e-09,9;UBERON:0000047,7.06e-09,9;UBERON:0010312,7.06e-09,9;UBERON:0004088,7.06e-09,9;UBERON:0002104,7.06e-09,9;UBERON:0001456,7.06e-09,9;UBERON:0003072,7.06e-09,9;UBERON:0004128,7.06e-09,9;UBERON:0003071,7.06e-09,9;UBERON:0010314,8.14e-09,92;UBERON:0000956,6.96e-08,21;UBERON:0001869,6.96e-08,21;UBERON:0000203,6.96e-08,21;UBERON:0001264,2.88e-07,12 | |||
|phase1_expression=0.160148847104794,1.04692622291808,0.909998478779072,0,0,34.0794921981136,43.2183385101723,0,0,0,0,0,0,0,0,0,0,0,0,0,21.4309091180696,0,0,6.07971206614945,4.81759490241057,3.44539178469012,3.4460959692726,8.40337807474967,5.13063232532209,5.04060259519861,6.65191531965914,0,0,0,1.44425809875637,2.1610503896604,1.22501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,36.0123300330084,33.8554226734101,20.2826049121977,0,0,0,0,0,0,0,43.6533267818691,35.6415677195663,41.2236924248709,2.85650984403804,3.53389665522582,20.7009450673272,19.073248732629,16.5459381589804,0,4.46905683298157,1.53606533256243,15.5625819521629,15.2784364816024,16.1483144872596,39.6439858581961,0.56276261003168,2.29197371665215,3.83017161115768,8.39992916714707,10.8111678578674,0.151452386666368,0.151143120213571,0,0,0,0,0,0,6.17955448579708,0,0,0,0,0,0,0,0,0,0,5.82337786567206,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,3.72783522436244,752.739429116688,670.857801923497,6.38642638021478,0,0,0,1.3481157546434,5.03250663100489,9.67538511269056,5.73620256634512,4.85859368927628,4.98691306942944,4.54275536589721,0,0,0,89.6482306076379,29.9277018814219,51.9578756019649,102.815476118854,147.992131114672,205.810409932767,458.775232340047,482.189074584365,287.419444891046,0,0,0,0,0,0,0,0.796137067273973,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0,0,15.1408762966172,196.856523481571,11.5646574044329,7.40461586657924,0.426576501070468,0.696710015581316,3.99489130098489,6.05050573870028,4.89231696458715,4.94586627892654,7.59246498471219,5.59976446061637,4.27269854960458,3.78017296878187,4.48417400373976,8.08937467788799,6.48414149624083,5.97423819763102,0,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0.393117990226406,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,1.13694847062291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0137647496948,5.39173758324135,0,0,1.26203287766503,0.780877488593277,0,0.238968797952552,0.445597348164788,0,0,0.584511715822624,0,11.5675673911851,0,0,0.162886959353576,0,6.63725691699814,28.4053344301328,23.8835610002153,24.141450208755,20.9664343945349,33.817866273832,19.898978573953,25.0838273339479,19.6073558111597,6.0046984007805,4.21674434299995,8.25084345985495,5.7874732978144,10.8036656418786,6.72665155670323,36.0086218853075,39.9015525695116,20.6907828418402,18.1003922662333,10.0473433207818,0,0,0,0,0,0.0603129249281559,0,0,6.70405924248657,1.48340241608408,0,0.206386867963223,0,0,0,0,0,0,0,1.90934123603023,0,6.30290348093231,0.972048067396211,1.04544148007234,1.52853794622324,0.809186078308924,1.81837602595739,1.83229159388821,2.59229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,13.5540442228096,13.3494318587081,15.4681788628637,9.45192502890282,5.48066015816514,6.7985450765073,6.07520250208625,6.30449684513909,4.53142408984205,2.5888015587591,20.8612568644195,22.7444177838588,13.6586884603307,7.77941494618541,10.2710449687711,8.27295788025063,9.77885602327107,10.5077879191836,10.2694147069381,8.59170519996911,9.37873409593887,10.1858224348481,9.64507526939789,8.51534526984761,7.69635284005218,9.52587382566147,6.95305955669133,6.36600427530227,12.3625770240992,9.56792980873583,7.54312355247914,9.40621772644489,10.9680647375768,10.0289027476307,7.24642229198046,7.36147088657586,10.0610385080025,8.94437018888666,7.4692262615224,10.661703161497,8.77899134118889,8.17587203717177,8.59385190656348,9.14127362997199,5.78719832943424,19.2354145012218,7.25187986180766,7.52048689169044,0.382576664137687,0,0 | |||
|short_description=p1@Neurod1 | |||
}} |
Revision as of 00:43, 14 September 2013
Short description: | p1@Neurod1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Neurod1_5end |
Coexpression cluster: | MCL_coexpression_mm9:403 |
Association with transcript: | 0bp_to_NM_010894, uc008kgt.1_5end |
EntrezGene: | Neurod1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.65e-09 | 23 |
neuroblast (sensu Vertebrata) | 8.65e-09 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.