FFCP PHASE1:Mm9::chr4:118954858..118954885,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22608|HGNC=|UniProt=|association_with_transcript=-67bp_to_ENSMUST00000144992_5end|description=CAGE_peak_5_at_Ybx1_5end|id=chr4:118954858..118954885,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000034,6.11e-09,97;CL:0000723,1.03e-07,91;CL:0000048,1.03e-07,91;CL:0002319,3.01e-07,43;CL:0000117,3.52e-07,23;CL:0000337,3.52e-07,23;CL:0000221,7.02e-07,44;CL:0000133,7.02e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.19e-07,34|phase1_expression=0.480446541314382,1.04692622291808,0,0.60492842261366,0,0.33575854382378,2.33612640595526,0.387369970324729,1.267098499365,1.87251621057595,2.39705155515707,2.47293692885543,0.171200729931206,0.437102012094987,1.33243904726265,1.82227740650843,1.39912375625629,0.946386496074713,0.685572168028694,0.42438965179803,2.04103896362567,1.09220046320974,0.783599367416806,2.87986361028132,0.45881856213434,0,0.430761996159075,1.07735616342945,2.28028103347649,0,0.221730510655305,3.17515336729816,0,0,0,0.332469290716985,0.408338712524738,0.837063261473815,0,0.523523743973798,0,2.04913645487534,0.485510353031154,0.629484089877886,0.506884656097573,0.367093504323363,0.782391344348039,1.96222640742402,0.878744730937887,2.13872888981712,1.95980990275508,2.87505128729943,0.671130424230945,2.17608642603403,0.336093799142464,3.08711323243136,0.85960031981627,1.03134418455488,1.82084814773638,4.7609188134483,1.26766280701236,1.0165335962074,2.66788438833342,0.899899717281399,1.97773272513395,3.5524005747305,0.599200221036809,1.92109152660777,2.28117147078651,5.8052553482627,1.89292465216244,3.14216082844184,2.87129103237098,1.46988959057945,3.06705507258356,2.75765635983006,0,0,0.768032666281217,1.71452174049252,4.84884511092771,1.56274011167028,0.279182999001381,0,0.61119299110724,5.59794312399969,4.12877874317399,1.4911955666024,0.681535739998656,1.058001841495,0.579728977403356,0,0,1.61910957491345,2.59910566979068,1.34408066129201,0.561777680527007,2.21559419351475,2.07828803682295,1.7666978725517,0.422530259330042,0,0,0,2.81438353314578,2.02687892380079,3.0331466700887,0.68510327831436,0.517875767294343,0.742210695324124,1.21439728736295,1.21786191324856,0.691846491768175,0.60289056221049,0.23517741427141,0.376999773989026,0.741584903203122,1.15679485535929,1.76922110389975,1.13236794963186,0.220841518460394,0,0,0.292780797011547,0.41889341362691,0.766371165625774,1.7972268675888,0.599902730993408,1.77898317902291,0.149790639404823,0,1.88481528169297,0.173824320192276,0,0.20778804455956,0,0.712875546952214,0.373220911830279,0.505445516867349,0.631325567659422,0.520481771850815,0.689706313300419,1.0803727788321,0.452114453507145,0.680364991513279,0.896796041993948,1.03071897015702,0.517406741478031,1.07783996466421,1.13463648100692,1.40760899331159,1.53437012699302,0.834141747676794,2.43776516565517,0.411564272815887,1.19420560091096,0,0.51469581422943,2.27330799516474,1.03562886267751,1.40715635988658,1.08037236876609,0.710234206755631,0.787056926989615,1.23413690309903,2.09280550275367,1.3413670069981,1.16765342367169,1.48103864922132,0.820837320395476,0.810688095458557,1.02339991197733,0.878200461164203,0.939444931322602,0,2.05809224758569,0.660837565967596,1.05780226665418,0.853153002140936,0.928946687441754,1.03093969057675,1.00841762311671,0.444756087689741,0.570676878337677,0,0.988193728344065,1.25667604400135,0.397912944082302,0.779856348476481,0,0.432276099749388,0.995706366271836,1.70701110857774,1.37098215131675,2.25415471346161,1.01825663922657,0.969762435838129,0.701358198903186,0.69560190836683,1.03327103585722,0.941992367048249,0.740382983530803,0.296452627087149,0.500535317148282,0.982794975566015,1.57403478669398,1.21716072833102,0.482354319504834,0,0.863088412352432,0.486405680325106,0.549122826376163,4.31304619582064,0.744281895337007,0.312037673114561,0.252578877947112,0.538192240565737,0,0.554259570499814,0.757965647081939,1.30371981153621,1.18821560042632,0.469380496577004,0.837531287209079,0.238043640886014,0.585400943573396,0.472905432318573,1.10732344824387,0.637819074629948,0.491589944147214,1.20879487306127,0.723245292907558,6.03165135757089,2.17562273527484,0.983528546038072,1.10374698521893,0.160550589987792,0.35163505977661,3.11476396215683,0.252470927204373,1.26203287766503,0.780877488593277,1.93881057959519,1.91175038362042,0.445597348164788,0.566153061577665,1.21443210502468,0.584511715822624,1.18586333383957,0.963963949265421,0.851640511249612,0.178065603667255,0.977321756121456,0.164970122972535,0,1.45668381692989,1.209294227859,0.188605079755898,0.885905678642318,0.922305443831782,0,0.363533729477506,0.712994756769443,0.632073515871632,0,1.03135543248187,0.680879211507576,1.08036656418786,0.646793418913773,0.428674070063185,0.532020700926821,0.891844088010353,0.164549020602121,0.913394847343798,0.704015124191131,0.21183207086382,0.441056796109924,0.98931751764888,0.645857706783622,0.663442174209714,0.7162340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| ||
|EntrezGene=22608 | |||
|HGNC= | |||
|UniProt= | |||
|association_with_transcript=-67bp_to_ENSMUST00000144992_5end | |||
|description=CAGE_peak_5_at_Ybx1_5end | |||
|id=chr4:118954858..118954885,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,6.11e-09,97;CL:0000723,1.03e-07,91;CL:0000048,1.03e-07,91;CL:0002319,3.01e-07,43;CL:0000117,3.52e-07,23;CL:0000337,3.52e-07,23;CL:0000221,7.02e-07,44;CL:0000133,7.02e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.19e-07,34 | |||
|phase1_expression=0.480446541314382,1.04692622291808,0,0.60492842261366,0,0.33575854382378,2.33612640595526,0.387369970324729,1.267098499365,1.87251621057595,2.39705155515707,2.47293692885543,0.171200729931206,0.437102012094987,1.33243904726265,1.82227740650843,1.39912375625629,0.946386496074713,0.685572168028694,0.42438965179803,2.04103896362567,1.09220046320974,0.783599367416806,2.87986361028132,0.45881856213434,0,0.430761996159075,1.07735616342945,2.28028103347649,0,0.221730510655305,3.17515336729816,0,0,0,0.332469290716985,0.408338712524738,0.837063261473815,0,0.523523743973798,0,2.04913645487534,0.485510353031154,0.629484089877886,0.506884656097573,0.367093504323363,0.782391344348039,1.96222640742402,0.878744730937887,2.13872888981712,1.95980990275508,2.87505128729943,0.671130424230945,2.17608642603403,0.336093799142464,3.08711323243136,0.85960031981627,1.03134418455488,1.82084814773638,4.7609188134483,1.26766280701236,1.0165335962074,2.66788438833342,0.899899717281399,1.97773272513395,3.5524005747305,0.599200221036809,1.92109152660777,2.28117147078651,5.8052553482627,1.89292465216244,3.14216082844184,2.87129103237098,1.46988959057945,3.06705507258356,2.75765635983006,0,0,0.768032666281217,1.71452174049252,4.84884511092771,1.56274011167028,0.279182999001381,0,0.61119299110724,5.59794312399969,4.12877874317399,1.4911955666024,0.681535739998656,1.058001841495,0.579728977403356,0,0,1.61910957491345,2.59910566979068,1.34408066129201,0.561777680527007,2.21559419351475,2.07828803682295,1.7666978725517,0.422530259330042,0,0,0,2.81438353314578,2.02687892380079,3.0331466700887,0.68510327831436,0.517875767294343,0.742210695324124,1.21439728736295,1.21786191324856,0.691846491768175,0.60289056221049,0.23517741427141,0.376999773989026,0.741584903203122,1.15679485535929,1.76922110389975,1.13236794963186,0.220841518460394,0,0,0.292780797011547,0.41889341362691,0.766371165625774,1.7972268675888,0.599902730993408,1.77898317902291,0.149790639404823,0,1.88481528169297,0.173824320192276,0,0.20778804455956,0,0.712875546952214,0.373220911830279,0.505445516867349,0.631325567659422,0.520481771850815,0.689706313300419,1.0803727788321,0.452114453507145,0.680364991513279,0.896796041993948,1.03071897015702,0.517406741478031,1.07783996466421,1.13463648100692,1.40760899331159,1.53437012699302,0.834141747676794,2.43776516565517,0.411564272815887,1.19420560091096,0,0.51469581422943,2.27330799516474,1.03562886267751,1.40715635988658,1.08037236876609,0.710234206755631,0.787056926989615,1.23413690309903,2.09280550275367,1.3413670069981,1.16765342367169,1.48103864922132,0.820837320395476,0.810688095458557,1.02339991197733,0.878200461164203,0.939444931322602,0,2.05809224758569,0.660837565967596,1.05780226665418,0.853153002140936,0.928946687441754,1.03093969057675,1.00841762311671,0.444756087689741,0.570676878337677,0,0.988193728344065,1.25667604400135,0.397912944082302,0.779856348476481,0,0.432276099749388,0.995706366271836,1.70701110857774,1.37098215131675,2.25415471346161,1.01825663922657,0.969762435838129,0.701358198903186,0.69560190836683,1.03327103585722,0.941992367048249,0.740382983530803,0.296452627087149,0.500535317148282,0.982794975566015,1.57403478669398,1.21716072833102,0.482354319504834,0,0.863088412352432,0.486405680325106,0.549122826376163,4.31304619582064,0.744281895337007,0.312037673114561,0.252578877947112,0.538192240565737,0,0.554259570499814,0.757965647081939,1.30371981153621,1.18821560042632,0.469380496577004,0.837531287209079,0.238043640886014,0.585400943573396,0.472905432318573,1.10732344824387,0.637819074629948,0.491589944147214,1.20879487306127,0.723245292907558,6.03165135757089,2.17562273527484,0.983528546038072,1.10374698521893,0.160550589987792,0.35163505977661,3.11476396215683,0.252470927204373,1.26203287766503,0.780877488593277,1.93881057959519,1.91175038362042,0.445597348164788,0.566153061577665,1.21443210502468,0.584511715822624,1.18586333383957,0.963963949265421,0.851640511249612,0.178065603667255,0.977321756121456,0.164970122972535,0,1.45668381692989,1.209294227859,0.188605079755898,0.885905678642318,0.922305443831782,0,0.363533729477506,0.712994756769443,0.632073515871632,0,1.03135543248187,0.680879211507576,1.08036656418786,0.646793418913773,0.428674070063185,0.532020700926821,0.891844088010353,0.164549020602121,0.913394847343798,0.704015124191131,0.21183207086382,0.441056796109924,0.98931751764888,0.645857706783622,0.663442174209714,0.716234064018819,0.656563598980245,0.582961673259701,0,0.512612642393558,0.412773735926445,0.740778109478847,0.188368457004691,0.546776910884101,0.457556346413045,1.01987057996313,0.69975726161829,1.38199973804424,1.90934123603023,0,0.609958401380546,0.540026704109006,0.627264888043406,0,0.944050424693745,0.743881101528023,0.26175594198403,1.03691978633434,0.621339313086926,14.0923234671048,1.19613236835183,0.165458490457098,0,0.387479470433193,0,0.704143431874524,0.5208175393758,0.314578033277133,1.69108884578204,3.45636007509439,0.632022241256357,1.01362607645082,1.12982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| |||
|short_description=p5@Ybx1 | |||
}} | |||
Revision as of 03:37, 14 September 2013
| Short description: | p5@Ybx1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_5_at_Ybx1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -67bp_to_ENSMUST00000144992_5end |
| EntrezGene: | Ybx1 |
| Link to Zenbu: | ZENBU |
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Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| stem cell | 6.11e-09 | 97 |
| somatic stem cell | 1.03e-07 | 91 |
| multi fate stem cell | 1.03e-07 | 91 |
| neural cell | 3.01e-07 | 43 |
| CNS neuron (sensu Vertebrata) | 3.52e-07 | 23 |
| neuroblast (sensu Vertebrata) | 3.52e-07 | 23 |
| ectodermal cell | 7.02e-07 | 44 |
| neurectodermal cell | 7.02e-07 | 44 |
| Ontology term | p-value | n |
|---|---|---|
| gray matter | 5.19e-07 | 34 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
