FFCP PHASE1:Mm9::chr4:131604903..131604927,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=269587|HGNC=|MCL_coexpression_id=729|UniProt=P48193,E9PWN5,E9Q6Q1,A2A840|association_with_transcript=65bp_to_ENSMUST00000084253,ENSMUST00000097859,ENSMUST00000105969,ENSMUST00000105981,NM_001128606,uc008val.2_5end|description=CAGE_peak_5_at_Epb4.1_5end|id=chr4:131604903..131604927,-|ontology_enrichment_celltype=CL:0000540!8.02e-13!33;CL:0000047!8.02e-13!33;CL:0000031!8.02e-13!33;CL:0000404!8.02e-13!33;CL:0000117!7.93e-10!23;CL:0000337!7.93e-10!23;CL:0000393!1.37e-08!39;CL:0000211!1.37e-08!39;CL:0000221!3.90e-08!44;CL:0000133!3.90e-08!44;CL:0002319!7.38e-08!43|ontology_enrichment_celltype_v019_2=CL:0000540,3.39e-11,33;CL:0000047,3.39e-11,33;CL:0000031,3.39e-11,33;CL:0000404,3.39e-11,33;CL:0000117,1.96e-09,23;CL:0000337,1.96e-09,23;CL:0000393,1.08e-08,39;CL:0000211,1.08e-08,39;CL:0002319,2.35e-08,43;CL:0000221,4.76e-08,44;CL:0000133,4.76e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!6.54e-13!71;UBERON:0003075!6.54e-13!71;UBERON:0007284!6.54e-13!71;UBERON:0000153!1.43e-12!94;UBERON:0004121!1.71e-12!102;UBERON:0000924!1.71e-12!102;UBERON:0006601!1.71e-12!102;UBERON:0001017!1.14e-11!73;UBERON:0005743!1.14e-11!73;UBERON:0000033!1.42e-11!63;UBERON:0000073!4.47e-11!75;UBERON:0001016!4.47e-11!75;UBERON:0007811!9.65e-11!86;UBERON:0003056!1.28e-10!49;UBERON:0001049!2.64e-08!52;UBERON:0005068!2.64e-08!52;UBERON:0006241!2.64e-08!52;UBERON:0007135!2.64e-08!52;UBERON:0000970!2.51e-07!9;UBERON:0000019!2.51e-07!9;UBERON:0000047!2.51e-07!9;UBERON:0004088!2.51e-07!9;UBERON:0002104!2.51e-07!9;UBERON:0001456!2.51e-07!9;UBERON:0003072!2.51e-07!9;UBERON:0003071!2.51e-07!9;UBERON:0004128!2.51e-07!9;UBERON:0002616!2.85e-07!49;UBERON:0000955!8.69e-07!50;UBERON:0006238!8.69e-07!50|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.71e-17,64;UBERON:0003075,1.71e-17,64;UBERON:0007284,1.71e-17,64;UBERON:0004121,2.30e-16,95;UBERON:0000924,2.30e-16,95;UBERON:0006601,2.30e-16,95;UBERON:0010371,3.03e-15,73;UBERON:0000970,2.45e-14,9;UBERON:0000019,2.45e-14,9;UBERON:0000047,2.45e-14,9;UBERON:0010312,2.45e-14,9;UBERON:0004088,2.45e-14,9;UBERON:0002104,2.45e-14,9;UBERON:0001456,2.45e-14,9;UBERON:0003072,2.45e-14,9;UBERON:0004128,2.45e-14,9;UBERON:0003071,2.45e-14,9;UBERON:0003056,3.65e-13,49;UBERON:0000020,2.95e-12,12;UBERON:0001032,2.95e-12,12;UBERON:0004456,2.95e-12,12;UBERON:0001017,5.51e-12,73;UBERON:0001016,1.96e-11,75;UBERON:0001444,2.71e-11,11;UBERON:0000033,4.17e-11,13;UBERON:0005085,4.17e-11,13;UBERON:0010314,6.21e-11,92;UBERON:0000073,3.84e-08,54;UBERON:0001049,7.45e-08,52;UBERON:0005068,7.45e-08,52;UBERON:0006241,7.45e-08,52;UBERON:0007135,7.45e-08,52|phase1_expression=1.28119077683835,0,0,0,0,0.33575854382378,0,0.129123323441576,1.12630977721333,0.70219357896598,0,0.159544317990673,0.171200729931206,0.524522414513984,0,0,0,0.315462165358238,0.685572168028694,0.42438965179803,0.935476191661768,0.0992909512008853,0.261199789138935,0.159992422793407,0.22940928106717,0.57423196411502,0,0,0,0,0.221730510655305,0.635030673459631,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0,0,0,0,0.838913030288682,0,2.35265659399725,0.257259436035947,0,0,2.63011399117477,5.28990979272033,3.80298842103708,0,0,0,0,0,1.19840044207362,0,1.24427534770173,2.02508907497536,0.841299845405528,1.14260393761521,0.662605622854841,0.979926393719632,1.72521847832825,0.919218786610021,1.10115880999389,0.766124028511126,0.46081959976873,3.03338461779446,3.47653045689157,5.2091337055676,0.837548997004143,0.56276261003168,0.30559649555362,1.17851434189467,1.56608848879013,1.4911955666024,0.075726193333184,0.151143120213571,0.289864488701678,0,0,0,0,0,0,0,0,0,0.845060518660083,0,0,0,0,0,0,0,1.29468941823586,0,0.520455980298408,0.304465478312141,0.230615497256059,0.150722640552623,1.17588707135705,0,0,0,0,0.161766849947409,0,0.484875253135222,0,9.66176630138106,12.1479089951804,0,0.11981512450592,0,0,1.64769703345305,0,0.628271760564322,0.347648640384553,0,0.62336413367868,0.811206315338788,0.305518091550949,0.248813941220186,0,5.89237196482127,1.82168620147785,1.83921683546778,3.42118046630164,2.10986744970001,5.91917542616552,6.91814089538189,7.77724313845749,11.9003550539947,1.5089759505299,1.89106080167819,2.28736461413134,0.43839146485515,0.278047249225598,0.696504333044333,0.205782136407943,0.995171334092466,0,0,0,0.621377317606506,0.469052119962192,0.180062061461015,0.473489471170421,0.393528463494808,0.462801338662135,0,0,0.350296027101508,0.329119699826961,0,0.243206428637567,0,0.219550115291051,0.402619256281115,0.420579897128254,0.92614151141356,0.660837565967596,0,1.70630600428187,1.62565670302307,0.257734922644187,0.201683524623343,0,0,0,0.329397909448022,0,0.198956472041151,0.19496408711912,0,0,0,0.379335801906163,0.685491075658373,1.1270773567308,0.203651327845314,0.775809948670503,0.631222379012867,0.189709611372772,0.147610147979602,0,0.246794327843601,0,0.166845105716094,0.786235980452812,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,1.13694847062291,0.97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| ||
|EntrezGene=269587 | |||
|HGNC= | |||
|MCL_coexpression_id=729 | |||
|UniProt=P48193,E9PWN5,E9Q6Q1,A2A840 | |||
|association_with_transcript=65bp_to_ENSMUST00000084253,ENSMUST00000097859,ENSMUST00000105969,ENSMUST00000105981,NM_001128606,uc008val.2_5end | |||
|description=CAGE_peak_5_at_Epb4.1_5end | |||
|id=chr4:131604903..131604927,- | |||
|ontology_enrichment_celltype=CL:0000540!8.02e-13!33;CL:0000047!8.02e-13!33;CL:0000031!8.02e-13!33;CL:0000404!8.02e-13!33;CL:0000117!7.93e-10!23;CL:0000337!7.93e-10!23;CL:0000393!1.37e-08!39;CL:0000211!1.37e-08!39;CL:0000221!3.90e-08!44;CL:0000133!3.90e-08!44;CL:0002319!7.38e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.39e-11,33;CL:0000047,3.39e-11,33;CL:0000031,3.39e-11,33;CL:0000404,3.39e-11,33;CL:0000117,1.96e-09,23;CL:0000337,1.96e-09,23;CL:0000393,1.08e-08,39;CL:0000211,1.08e-08,39;CL:0002319,2.35e-08,43;CL:0000221,4.76e-08,44;CL:0000133,4.76e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!6.54e-13!71;UBERON:0003075!6.54e-13!71;UBERON:0007284!6.54e-13!71;UBERON:0000153!1.43e-12!94;UBERON:0004121!1.71e-12!102;UBERON:0000924!1.71e-12!102;UBERON:0006601!1.71e-12!102;UBERON:0001017!1.14e-11!73;UBERON:0005743!1.14e-11!73;UBERON:0000033!1.42e-11!63;UBERON:0000073!4.47e-11!75;UBERON:0001016!4.47e-11!75;UBERON:0007811!9.65e-11!86;UBERON:0003056!1.28e-10!49;UBERON:0001049!2.64e-08!52;UBERON:0005068!2.64e-08!52;UBERON:0006241!2.64e-08!52;UBERON:0007135!2.64e-08!52;UBERON:0000970!2.51e-07!9;UBERON:0000019!2.51e-07!9;UBERON:0000047!2.51e-07!9;UBERON:0004088!2.51e-07!9;UBERON:0002104!2.51e-07!9;UBERON:0001456!2.51e-07!9;UBERON:0003072!2.51e-07!9;UBERON:0003071!2.51e-07!9;UBERON:0004128!2.51e-07!9;UBERON:0002616!2.85e-07!49;UBERON:0000955!8.69e-07!50;UBERON:0006238!8.69e-07!50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.71e-17,64;UBERON:0003075,1.71e-17,64;UBERON:0007284,1.71e-17,64;UBERON:0004121,2.30e-16,95;UBERON:0000924,2.30e-16,95;UBERON:0006601,2.30e-16,95;UBERON:0010371,3.03e-15,73;UBERON:0000970,2.45e-14,9;UBERON:0000019,2.45e-14,9;UBERON:0000047,2.45e-14,9;UBERON:0010312,2.45e-14,9;UBERON:0004088,2.45e-14,9;UBERON:0002104,2.45e-14,9;UBERON:0001456,2.45e-14,9;UBERON:0003072,2.45e-14,9;UBERON:0004128,2.45e-14,9;UBERON:0003071,2.45e-14,9;UBERON:0003056,3.65e-13,49;UBERON:0000020,2.95e-12,12;UBERON:0001032,2.95e-12,12;UBERON:0004456,2.95e-12,12;UBERON:0001017,5.51e-12,73;UBERON:0001016,1.96e-11,75;UBERON:0001444,2.71e-11,11;UBERON:0000033,4.17e-11,13;UBERON:0005085,4.17e-11,13;UBERON:0010314,6.21e-11,92;UBERON:0000073,3.84e-08,54;UBERON:0001049,7.45e-08,52;UBERON:0005068,7.45e-08,52;UBERON:0006241,7.45e-08,52;UBERON:0007135,7.45e-08,52 | |||
|phase1_expression=1.28119077683835,0,0,0,0,0.33575854382378,0,0.129123323441576,1.12630977721333,0.70219357896598,0,0.159544317990673,0.171200729931206,0.524522414513984,0,0,0,0.315462165358238,0.685572168028694,0.42438965179803,0.935476191661768,0.0992909512008853,0.261199789138935,0.159992422793407,0.22940928106717,0.57423196411502,0,0,0,0,0.221730510655305,0.635030673459631,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0.436050312760893,0,0,0,0,0.838913030288682,0,2.35265659399725,0.257259436035947,0,0,2.63011399117477,5.28990979272033,3.80298842103708,0,0,0,0,0,1.19840044207362,0,1.24427534770173,2.02508907497536,0.841299845405528,1.14260393761521,0.662605622854841,0.979926393719632,1.72521847832825,0.919218786610021,1.10115880999389,0.766124028511126,0.46081959976873,3.03338461779446,3.47653045689157,5.2091337055676,0.837548997004143,0.56276261003168,0.30559649555362,1.17851434189467,1.56608848879013,1.4911955666024,0.075726193333184,0.151143120213571,0.289864488701678,0,0,0,0,0,0,0,0,0,0.845060518660083,0,0,0,0,0,0,0,1.29468941823586,0,0.520455980298408,0.304465478312141,0.230615497256059,0.150722640552623,1.17588707135705,0,0,0,0,0.161766849947409,0,0.484875253135222,0,9.66176630138106,12.1479089951804,0,0.11981512450592,0,0,1.64769703345305,0,0.628271760564322,0.347648640384553,0,0.62336413367868,0.811206315338788,0.305518091550949,0.248813941220186,0,5.89237196482127,1.82168620147785,1.83921683546778,3.42118046630164,2.10986744970001,5.91917542616552,6.91814089538189,7.77724313845749,11.9003550539947,1.5089759505299,1.89106080167819,2.28736461413134,0.43839146485515,0.278047249225598,0.696504333044333,0.205782136407943,0.995171334092466,0,0,0,0.621377317606506,0.469052119962192,0.180062061461015,0.473489471170421,0.393528463494808,0.462801338662135,0,0,0.350296027101508,0.329119699826961,0,0.243206428637567,0,0.219550115291051,0.402619256281115,0.420579897128254,0.92614151141356,0.660837565967596,0,1.70630600428187,1.62565670302307,0.257734922644187,0.201683524623343,0,0,0,0.329397909448022,0,0.198956472041151,0.19496408711912,0,0,0,0.379335801906163,0.685491075658373,1.1270773567308,0.203651327845314,0.775809948670503,0.631222379012867,0.189709611372772,0.147610147979602,0,0.246794327843601,0,0.166845105716094,0.786235980452812,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,1.13694847062291,0.977789858652155,0.848725428875941,0.704070744865506,0.335012514883631,0.476087281772027,0.390267295715598,0.788175720530955,0.44292937929755,0.637819074629948,0.655453258862952,0.690739927463582,0.433947175744535,0,0,0,0.275936746304732,0.642202359951168,0.35163505977661,0,0,1.89304931649754,1.56175497718655,0.646270193198397,1.19484398976276,0.222798674082394,0.849229592366497,0.809621403349789,1.75353514746787,0.790575555893047,0,0.425820255624806,0.712262414669021,1.30309567482861,0.164970122972535,0,0.728341908464944,0,0.377210159511796,0.295301892880773,0.307435147943927,0,0.363533729477506,0,0.948110273807448,1.05418608574999,1.03135543248187,1.02131881726136,3.42116078659489,1.55230420539305,1.07168517515796,1.24138163549592,0.713475270408282,0.329098041204242,1.8267896946876,0.704015124191131,0.21183207086382,1.54369878638473,0,0.322928853391811,0.180938774784468,0.238744688006273,0.164140899745061,0,0.370850604021019,0.170870880797853,0.412773735926445,0,0,0.27338845544205,0,0.169978429993855,0.279902904647316,0.276399947608848,0,1.26534397432454,0.406638934253697,0.432021363287205,0.627264888043406,0.218362563746178,0.404593039154462,0.247960367176008,0.26175594198403,0,0.621339313086926,0,0.897099276263873,0.496375471371293,0.194451188344048,0.387479470433193,0.337912250981556,0.821500670520278,0.781226309063701,0.629156066554265,0.241584120826006,0,1.26404448251271,0.810900861160657,0.410843828659309,0.129920822977795,0.179026695667481,0.198681354781265,0.721172697119813,0.738447635872886,0.605798699688886,0.762068066549998,0.201652370273681,0.877120926657772,0.384847366561318,0.701261413089414,0,0,0.0897138566094757,0,0,0,0,0.214368379079066,0.501572104035363,1.6942555278512,0,0,0.343706364687375,2.05524755931193,1.5107877947794,0,0.45032120322422,0,0.51776031175182,4.04770655578289,3.19219898720825,1.36586884603307,0.729320151204882,1.04806581313991,0.183843508450014,0.222246727801615,0.412070114477788,0.320919209591815,0,0.50695859978048,0,0.561849044819294,0.640251524048693,0.689225627467359,1.42888107384922,0.347652977834566,0.77163688185482,0.412085900803307,0.588795680537589,2.40008476669791,0.532427418478012,0,0.145346416632329,0.564656282491984,1.01537529470012,0.548783918618318,0.263069711437843,0.407412341537585,1.12228454331548,0.474540072496697,0.886540341380071,0,0.154936841185966,0.385813221962283,0.249810577937946,0.467863216890817,0.214871054048298,0.382576664137687,0.220591419119515,0.231867835620421 | |||
|short_description=p5@Epb4.1 | |||
}} |
Revision as of 03:57, 14 September 2013
Short description: | p5@Epb4.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Epb4.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:729 |
Association with transcript: | 65bp_to_ENSMUST00000084253, ENSMUST00000097859, ENSMUST00000105969, ENSMUST00000105981, NM_001128606, uc008val.2_5end |
EntrezGene: | Epb4.1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.39e-11 | 33 |
neuronal stem cell | 3.39e-11 | 33 |
neuroblast | 3.39e-11 | 33 |
electrically signaling cell | 3.39e-11 | 33 |
CNS neuron (sensu Vertebrata) | 1.96e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.96e-09 | 23 |
electrically responsive cell | 1.08e-08 | 39 |
electrically active cell | 1.08e-08 | 39 |
neural cell | 2.35e-08 | 43 |
ectodermal cell | 4.76e-08 | 44 |
neurectodermal cell | 4.76e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.71e-17 | 64 |
neural plate | 1.71e-17 | 64 |
presumptive neural plate | 1.71e-17 | 64 |
ectoderm-derived structure | 2.30e-16 | 95 |
ectoderm | 2.30e-16 | 95 |
presumptive ectoderm | 2.30e-16 | 95 |
ecto-epithelium | 3.03e-15 | 73 |
eye | 2.45e-14 | 9 |
camera-type eye | 2.45e-14 | 9 |
simple eye | 2.45e-14 | 9 |
immature eye | 2.45e-14 | 9 |
ocular region | 2.45e-14 | 9 |
visual system | 2.45e-14 | 9 |
face | 2.45e-14 | 9 |
optic cup | 2.45e-14 | 9 |
optic vesicle | 2.45e-14 | 9 |
eye primordium | 2.45e-14 | 9 |
pre-chordal neural plate | 3.65e-13 | 49 |
sense organ | 2.95e-12 | 12 |
sensory system | 2.95e-12 | 12 |
entire sense organ system | 2.95e-12 | 12 |
central nervous system | 5.51e-12 | 73 |
nervous system | 1.96e-11 | 75 |
subdivision of head | 2.71e-11 | 11 |
head | 4.17e-11 | 13 |
ectodermal placode | 4.17e-11 | 13 |
structure with developmental contribution from neural crest | 6.21e-11 | 92 |
regional part of nervous system | 3.84e-08 | 54 |
neural tube | 7.45e-08 | 52 |
neural rod | 7.45e-08 | 52 |
future spinal cord | 7.45e-08 | 52 |
neural keel | 7.45e-08 | 52 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.