FFCP PHASE1:Mm9::chr4:150503544..150503561,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=100072|HGNC=|MCL_coexpression_id=1720|UniProt=A2A891|association_with_transcript=42bp_to_ENSMUST00000105668,uc008vym.2_5end|description=CAGE_peak_8_at_Camta1_5end|id=chr4:150503544..150503561,-|ontology_enrichment_celltype=CL:0000540!2.10e-20!33;CL:0000047!2.10e-20!33;CL:0000031!2.10e-20!33;CL:0000404!2.10e-20!33;CL:0000393!6.79e-15!39;CL:0000211!6.79e-15!39;CL:0000117!8.68e-15!23;CL:0000337!8.68e-15!23;CL:0000221!2.14e-13!44;CL:0000133!2.14e-13!44;CL:0002319!2.20e-13!43;CL:0000055!1.53e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,9.09e-16,33;CL:0000047,9.09e-16,33;CL:0000031,9.09e-16,33;CL:0000404,9.09e-16,33;CL:0000393,6.63e-13,39;CL:0000211,6.63e-13,39;CL:0002319,1.93e-11,43;CL:0000221,4.07e-11,44;CL:0000133,4.07e-11,44;CL:0002608,6.18e-11,3;CL:0000117,1.37e-09,23;CL:0000337,1.37e-09,23;CL:0002609,4.08e-09,6;CL:0000107,1.87e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.64e-23!102;UBERON:0000924!3.64e-23!102;UBERON:0006601!3.64e-23!102;UBERON:0001017!3.83e-20!73;UBERON:0005743!3.83e-20!73;UBERON:0000073!1.59e-19!75;UBERON:0001016!1.59e-19!75;UBERON:0002346!1.94e-19!71;UBERON:0003075!1.94e-19!71;UBERON:0007284!1.94e-19!71;UBERON:0000033!1.84e-16!63;UBERON:0003056!2.91e-16!49;UBERON:0001049!1.27e-12!52;UBERON:0005068!1.27e-12!52;UBERON:0006241!1.27e-12!52;UBERON:0007135!1.27e-12!52;UBERON:0000955!8.28e-12!50;UBERON:0006238!8.28e-12!50;UBERON:0002616!1.46e-11!49;UBERON:0003080!1.15e-10!40;UBERON:0002780!4.45e-10!39;UBERON:0001890!4.45e-10!39;UBERON:0006240!4.45e-10!39;UBERON:0000153!4.07e-09!94;UBERON:0002020!6.08e-09!34;UBERON:0007811!9.46e-09!86;UBERON:0000970!2.17e-07!9;UBERON:0000019!2.17e-07!9;UBERON:0000047!2.17e-07!9;UBERON:0004088!2.17e-07!9;UBERON:0002104!2.17e-07!9;UBERON:0001456!2.17e-07!9;UBERON:0003072!2.17e-07!9;UBERON:0003071!2.17e-07!9;UBERON:0004128!2.17e-07!9;UBERON:0002791!8.12e-07!29;UBERON:0003528!8.12e-07!29;UBERON:0001893!8.12e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.20e-17,95;UBERON:0000924,1.20e-17,95;UBERON:0006601,1.20e-17,95;UBERON:0003056,1.72e-17,49;UBERON:0000970,4.84e-17,9;UBERON:0000019,4.84e-17,9;UBERON:0000047,4.84e-17,9;UBERON:0010312,4.84e-17,9;UBERON:0004088,4.84e-17,9;UBERON:0002104,4.84e-17,9;UBERON:0001456,4.84e-17,9;UBERON:0003072,4.84e-17,9;UBERON:0004128,4.84e-17,9;UBERON:0003071,4.84e-17,9;UBERON:0002346,7.23e-16,64;UBERON:0003075,7.23e-16,64;UBERON:0007284,7.23e-16,64;UBERON:0001444,9.05e-14,11;UBERON:0010371,2.11e-13,73;UBERON:0000020,1.53e-12,12;UBERON:0001032,1.53e-12,12;UBERON:0004456,1.53e-12,12;UBERON:0000033,1.67e-11,13;UBERON:0005085,1.67e-11,13;UBERON:0001017,2.06e-11,73;UBERON:0001016,5.26e-11,75;UBERON:0010314,8.85e-10,92;UBERON:0002410,1.87e-08,9;UBERON:0003080,1.74e-07,40;UBERON:0003528,2.13e-07,29;UBERON:0002791,2.13e-07,29;UBERON:0001893,2.13e-07,29;UBERON:0000010,7.27e-07,11|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,1.01158230429799,1.05798195854407,0.633831403506179,0,0,0,0,0,0,0,0.829516898467821,1.21505344498522,0.841299845405528,0.856952953211411,0.883474163806454,4.16468717330844,3.35459148563827,2.75765635983006,1.10115880999389,0.638436690425939,0.921639199537461,3.03338461779446,1.18933936683133,0.52091337055676,0.558365998002762,0.56276261003168,0.61119299110724,0.883885756421003,0.996601765593721,0.186399445825301,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0.346970653532272,0.304465478312141,0.461230994512117,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,1.04853447583376,0.457500602818626,1.50785222535437,0,0.511430914660661,0.41557608911912,0.162241263067758,0.101839363850316,0,0,0.210441855886474,1.04096354370163,1.14951052216736,2.16074555766419,2.71268672104287,3.81004395247436,4.61209393025459,3.84177070694888,0.776110112217047,1.5089759505299,1.13463648100692,0.527853372491847,0.43839146485515,0,0,0,0.398068533636986,0,0,0,0.414251545071004,0.703578179943289,0.180062061461015,0,0.393528463494808,0.617068451549513,0.232533944750408,0.268273401399619,0.116765342367169,0,0,0.0810688095458557,0,0,0,0.210289948564127,0.617427674275707,0,0,0.426576501070468,0.928946687441754,0.515469845288373,0.80673409849337,0,0.190225626112559,0,0,0,0,0.19496408711912,0,0,0,0.758671603812327,0.456994050438915,0,0,0.387904974335251,0.631222379012867,0.0632365371242573,0,0,0,0,0,0.196558995113203,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.162964976442026,0.169745085775188,0.234690248288502,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.586058432961016,0,0,0.94652465824877,1.56175497718655,1.07711698866399,0.477937595905104,0.445597348164788,1.98153571552183,0.404810701674894,1.16902343164525,1.58115111178609,0.321321316421807,0.141940085208269,0.178065603667255,0,0,0,0.242780636154981,0.302323556964751,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,1.98067203434441,0.905510786479282,0.857348140126369,0.354680467284547,0.891844088010353,0.164549020602121,0.304464949114599,0,0,0,0.32977250588296,0.161464426695906,0.241251699712623,0.119372344003136,0.164140899745061,0,0.556275906031529,0,0.206386867963223,0,0,0,0,0,0,0,0,0.158167996790568,0.406638934253697,0.108005340821801,0,0,0,0,0,0,0,0,0.299033092087958,0,0.194451188344048,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0,0,0,0,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0,0.428736758158132,0,0,0.920650473014354,1.14579102687879,0.171853182343688,0.685082519770642,0,0,0,0,1.03552062350364,0.830298780673413,3.59122386060928,0.512200817262403,0.243106717068294,0,0,0.44449345560323,0.206035057238894,0,0.252697211763798,0.760437899670719,0.754505365544305,0.0936415074698824,0.320125762024346,0.229741875822453,0.476293691283074,0.463537303779422,0.192909220463705,0,0.588795680537589,0,0,0.238436189947321,0.872078499793971,0.282328141245992,0.25384382367503,0.365855945745545,0.526139422875686,0.543216455383447,0.561142271657738,0,0.394017929502254,0,0.154936841185966,0.578719832943424,0.499621155875892,0.233931608445408,0,0.382576664137687,0,0.231867835620421|short_description=p8@Camta1}} | ||
|EntrezGene=100072 | |||
|HGNC= | |||
|MCL_coexpression_id=1720 | |||
|UniProt=A2A891 | |||
|association_with_transcript=42bp_to_ENSMUST00000105668,uc008vym.2_5end | |||
|description=CAGE_peak_8_at_Camta1_5end | |||
|id=chr4:150503544..150503561,- | |||
|ontology_enrichment_celltype=CL:0000540!2.10e-20!33;CL:0000047!2.10e-20!33;CL:0000031!2.10e-20!33;CL:0000404!2.10e-20!33;CL:0000393!6.79e-15!39;CL:0000211!6.79e-15!39;CL:0000117!8.68e-15!23;CL:0000337!8.68e-15!23;CL:0000221!2.14e-13!44;CL:0000133!2.14e-13!44;CL:0002319!2.20e-13!43;CL:0000055!1.53e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,9.09e-16,33;CL:0000047,9.09e-16,33;CL:0000031,9.09e-16,33;CL:0000404,9.09e-16,33;CL:0000393,6.63e-13,39;CL:0000211,6.63e-13,39;CL:0002319,1.93e-11,43;CL:0000221,4.07e-11,44;CL:0000133,4.07e-11,44;CL:0002608,6.18e-11,3;CL:0000117,1.37e-09,23;CL:0000337,1.37e-09,23;CL:0002609,4.08e-09,6;CL:0000107,1.87e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.64e-23!102;UBERON:0000924!3.64e-23!102;UBERON:0006601!3.64e-23!102;UBERON:0001017!3.83e-20!73;UBERON:0005743!3.83e-20!73;UBERON:0000073!1.59e-19!75;UBERON:0001016!1.59e-19!75;UBERON:0002346!1.94e-19!71;UBERON:0003075!1.94e-19!71;UBERON:0007284!1.94e-19!71;UBERON:0000033!1.84e-16!63;UBERON:0003056!2.91e-16!49;UBERON:0001049!1.27e-12!52;UBERON:0005068!1.27e-12!52;UBERON:0006241!1.27e-12!52;UBERON:0007135!1.27e-12!52;UBERON:0000955!8.28e-12!50;UBERON:0006238!8.28e-12!50;UBERON:0002616!1.46e-11!49;UBERON:0003080!1.15e-10!40;UBERON:0002780!4.45e-10!39;UBERON:0001890!4.45e-10!39;UBERON:0006240!4.45e-10!39;UBERON:0000153!4.07e-09!94;UBERON:0002020!6.08e-09!34;UBERON:0007811!9.46e-09!86;UBERON:0000970!2.17e-07!9;UBERON:0000019!2.17e-07!9;UBERON:0000047!2.17e-07!9;UBERON:0004088!2.17e-07!9;UBERON:0002104!2.17e-07!9;UBERON:0001456!2.17e-07!9;UBERON:0003072!2.17e-07!9;UBERON:0003071!2.17e-07!9;UBERON:0004128!2.17e-07!9;UBERON:0002791!8.12e-07!29;UBERON:0003528!8.12e-07!29;UBERON:0001893!8.12e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.20e-17,95;UBERON:0000924,1.20e-17,95;UBERON:0006601,1.20e-17,95;UBERON:0003056,1.72e-17,49;UBERON:0000970,4.84e-17,9;UBERON:0000019,4.84e-17,9;UBERON:0000047,4.84e-17,9;UBERON:0010312,4.84e-17,9;UBERON:0004088,4.84e-17,9;UBERON:0002104,4.84e-17,9;UBERON:0001456,4.84e-17,9;UBERON:0003072,4.84e-17,9;UBERON:0004128,4.84e-17,9;UBERON:0003071,4.84e-17,9;UBERON:0002346,7.23e-16,64;UBERON:0003075,7.23e-16,64;UBERON:0007284,7.23e-16,64;UBERON:0001444,9.05e-14,11;UBERON:0010371,2.11e-13,73;UBERON:0000020,1.53e-12,12;UBERON:0001032,1.53e-12,12;UBERON:0004456,1.53e-12,12;UBERON:0000033,1.67e-11,13;UBERON:0005085,1.67e-11,13;UBERON:0001017,2.06e-11,73;UBERON:0001016,5.26e-11,75;UBERON:0010314,8.85e-10,92;UBERON:0002410,1.87e-08,9;UBERON:0003080,1.74e-07,40;UBERON:0003528,2.13e-07,29;UBERON:0002791,2.13e-07,29;UBERON:0001893,2.13e-07,29;UBERON:0000010,7.27e-07,11 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,1.01158230429799,1.05798195854407,0.633831403506179,0,0,0,0,0,0,0,0.829516898467821,1.21505344498522,0.841299845405528,0.856952953211411,0.883474163806454,4.16468717330844,3.35459148563827,2.75765635983006,1.10115880999389,0.638436690425939,0.921639199537461,3.03338461779446,1.18933936683133,0.52091337055676,0.558365998002762,0.56276261003168,0.61119299110724,0.883885756421003,0.996601765593721,0.186399445825301,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0.346970653532272,0.304465478312141,0.461230994512117,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,1.04853447583376,0.457500602818626,1.50785222535437,0,0.511430914660661,0.41557608911912,0.162241263067758,0.101839363850316,0,0,0.210441855886474,1.04096354370163,1.14951052216736,2.16074555766419,2.71268672104287,3.81004395247436,4.61209393025459,3.84177070694888,0.776110112217047,1.5089759505299,1.13463648100692,0.527853372491847,0.43839146485515,0,0,0,0.398068533636986,0,0,0,0.414251545071004,0.703578179943289,0.180062061461015,0,0.393528463494808,0.617068451549513,0.232533944750408,0.268273401399619,0.116765342367169,0,0,0.0810688095458557,0,0,0,0.210289948564127,0.617427674275707,0,0,0.426576501070468,0.928946687441754,0.515469845288373,0.80673409849337,0,0.190225626112559,0,0,0,0,0.19496408711912,0,0,0,0.758671603812327,0.456994050438915,0,0,0.387904974335251,0.631222379012867,0.0632365371242573,0,0,0,0,0,0.196558995113203,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.162964976442026,0.169745085775188,0.234690248288502,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.586058432961016,0,0,0.94652465824877,1.56175497718655,1.07711698866399,0.477937595905104,0.445597348164788,1.98153571552183,0.404810701674894,1.16902343164525,1.58115111178609,0.321321316421807,0.141940085208269,0.178065603667255,0,0,0,0.242780636154981,0.302323556964751,0,0,0,0,0,0,0.316036757935816,0,0,0.340439605753788,1.98067203434441,0.905510786479282,0.857348140126369,0.354680467284547,0.891844088010353,0.164549020602121,0.304464949114599,0,0,0,0.32977250588296,0.161464426695906,0.241251699712623,0.119372344003136,0.164140899745061,0,0.556275906031529,0,0.206386867963223,0,0,0,0,0,0,0,0,0.158167996790568,0.406638934253697,0.108005340821801,0,0,0,0,0,0,0,0,0.299033092087958,0,0.194451188344048,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0.405450430580328,0.102710957164827,0,0,0,0,0,0,0,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0,0,0.428736758158132,0,0,0.920650473014354,1.14579102687879,0.171853182343688,0.685082519770642,0,0,0,0,1.03552062350364,0.830298780673413,3.59122386060928,0.512200817262403,0.243106717068294,0,0,0.44449345560323,0.206035057238894,0,0.252697211763798,0.760437899670719,0.754505365544305,0.0936415074698824,0.320125762024346,0.229741875822453,0.476293691283074,0.463537303779422,0.192909220463705,0,0.588795680537589,0,0,0.238436189947321,0.872078499793971,0.282328141245992,0.25384382367503,0.365855945745545,0.526139422875686,0.543216455383447,0.561142271657738,0,0.394017929502254,0,0.154936841185966,0.578719832943424,0.499621155875892,0.233931608445408,0,0.382576664137687,0,0.231867835620421 | |||
|short_description=p8@Camta1 | |||
}} |
Revision as of 04:33, 14 September 2013
Short description: | p8@Camta1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Camta1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1720 |
Association with transcript: | 42bp_to_ENSMUST00000105668, uc008vym.2_5end |
EntrezGene: | Camta1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 9.09e-16 | 33 |
neuronal stem cell | 9.09e-16 | 33 |
neuroblast | 9.09e-16 | 33 |
electrically signaling cell | 9.09e-16 | 33 |
electrically responsive cell | 6.63e-13 | 39 |
electrically active cell | 6.63e-13 | 39 |
neural cell | 1.93e-11 | 43 |
ectodermal cell | 4.07e-11 | 44 |
neurectodermal cell | 4.07e-11 | 44 |
hippocampal neuron | 6.18e-11 | 3 |
CNS neuron (sensu Vertebrata) | 1.37e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.37e-09 | 23 |
neuron of cerebral cortex | 4.08e-09 | 6 |
autonomic neuron | 1.87e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.20e-17 | 95 |
ectoderm | 1.20e-17 | 95 |
presumptive ectoderm | 1.20e-17 | 95 |
pre-chordal neural plate | 1.72e-17 | 49 |
eye | 4.84e-17 | 9 |
camera-type eye | 4.84e-17 | 9 |
simple eye | 4.84e-17 | 9 |
immature eye | 4.84e-17 | 9 |
ocular region | 4.84e-17 | 9 |
visual system | 4.84e-17 | 9 |
face | 4.84e-17 | 9 |
optic cup | 4.84e-17 | 9 |
optic vesicle | 4.84e-17 | 9 |
eye primordium | 4.84e-17 | 9 |
neurectoderm | 7.23e-16 | 64 |
neural plate | 7.23e-16 | 64 |
presumptive neural plate | 7.23e-16 | 64 |
subdivision of head | 9.05e-14 | 11 |
ecto-epithelium | 2.11e-13 | 73 |
sense organ | 1.53e-12 | 12 |
sensory system | 1.53e-12 | 12 |
entire sense organ system | 1.53e-12 | 12 |
head | 1.67e-11 | 13 |
ectodermal placode | 1.67e-11 | 13 |
central nervous system | 2.06e-11 | 73 |
nervous system | 5.26e-11 | 75 |
structure with developmental contribution from neural crest | 8.85e-10 | 92 |
autonomic nervous system | 1.87e-08 | 9 |
anterior neural tube | 1.74e-07 | 40 |
brain grey matter | 2.13e-07 | 29 |
regional part of telencephalon | 2.13e-07 | 29 |
telencephalon | 2.13e-07 | 29 |
peripheral nervous system | 7.27e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.