FFCP PHASE1:Mm9::chr4:59300300..59300323,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=63|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:59300300..59300323,+|id=chr4:59300300..59300323,+|ontology_enrichment_celltype=CL:0000553!1.14e-13!6;CL:0000556!1.14e-13!6;CL:0000050!8.48e-09!9;CL:0002027!2.42e-07!3;CL:0002006!2.42e-07!3;CL:0002024!2.42e-07!3;CL:0000414!4.98e-07!11|ontology_enrichment_celltype_v019_2=CL:0000553,1.14e-30,6;CL:0000556,1.14e-30,6;CL:0000050,1.67e-20,9;CL:0000839,3.17e-14,13;CL:0000763,1.45e-11,16;CL:0002031,2.27e-10,25;CL:0002027,2.47e-10,3;CL:0002006,2.47e-10,3;CL:0002024,2.47e-10,3;CL:0000049,9.67e-10,19;CL:0000945,1.74e-08,1;CL:0000236,1.74e-08,1;CL:0000826,1.74e-08,1;CL:0000988,4.81e-08,32;CL:0002032,4.81e-08,32;CL:0000037,4.81e-08,32;CL:0000837,4.81e-08,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.42e-12,48;UBERON:0002405,8.42e-12,48;UBERON:0002106,1.04e-11,6;UBERON:0004457,1.04e-11,6;UBERON:0000042,1.04e-11,6;UBERON:0004854,1.04e-11,6;UBERON:0009034,1.04e-11,6;UBERON:0002095,1.04e-11,6;UBERON:0004782,1.04e-11,6;UBERON:0003281,1.04e-11,6;UBERON:0009664,1.04e-11,6;UBERON:0002296,1.04e-11,6;UBERON:0005602,1.04e-11,6;UBERON:0001179,1.04e-11,6;UBERON:0006293,1.04e-11,6;UBERON:0002371,1.45e-11,16;UBERON:0002390,6.61e-10,45;UBERON:0003061,6.61e-10,45;UBERON:0000029,4.39e-09,1;UBERON:0001097,4.39e-09,1;UBERON:0003968,4.39e-09,1;UBERON:0001467,4.39e-09,1;UBERON:0001474,2.08e-08,22;UBERON:0004765,2.08e-08,22;UBERON:0001434,2.08e-08,22;UBERON:0003887,3.03e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99865857089398,1.21485160433896,0.699561878128147,14.0380663584416,15.0825876966313,7.63901373236454,0.0850432901510698,0.297872853602656,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01339127269284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,51.26970096214,0.148442139064825,0,0,0,0.150722640552623,0,0,0,0,0.884610551949874,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0.432276099749388,0,0,0.114248512609729,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0.184753190166605,0,0,0,0,0.167506257441816,0,0,0,0,0.318909537314974,0.163863314715738,0.518054945597687,0.289298117163023,0,0,2.45882136509518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32745138339963,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,4.27177201994632,0,0,0.753473828018764,3.41735569302563,3.88922894451088,0.509935289981566,0.279902904647316,0.138199973804424,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0.0762068066549998,0,0,0,0.233753804363138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0.135804113845862,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0|short_description=p@chr4:59300300..59300323,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=63 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:59300300..59300323,+ | |||
|id=chr4:59300300..59300323,+ | |||
|ontology_enrichment_celltype=CL:0000553!1.14e-13!6;CL:0000556!1.14e-13!6;CL:0000050!8.48e-09!9;CL:0002027!2.42e-07!3;CL:0002006!2.42e-07!3;CL:0002024!2.42e-07!3;CL:0000414!4.98e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000553,1.14e-30,6;CL:0000556,1.14e-30,6;CL:0000050,1.67e-20,9;CL:0000839,3.17e-14,13;CL:0000763,1.45e-11,16;CL:0002031,2.27e-10,25;CL:0002027,2.47e-10,3;CL:0002006,2.47e-10,3;CL:0002024,2.47e-10,3;CL:0000049,9.67e-10,19;CL:0000945,1.74e-08,1;CL:0000236,1.74e-08,1;CL:0000826,1.74e-08,1;CL:0000988,4.81e-08,32;CL:0002032,4.81e-08,32;CL:0000037,4.81e-08,32;CL:0000837,4.81e-08,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,8.42e-12,48;UBERON:0002405,8.42e-12,48;UBERON:0002106,1.04e-11,6;UBERON:0004457,1.04e-11,6;UBERON:0000042,1.04e-11,6;UBERON:0004854,1.04e-11,6;UBERON:0009034,1.04e-11,6;UBERON:0002095,1.04e-11,6;UBERON:0004782,1.04e-11,6;UBERON:0003281,1.04e-11,6;UBERON:0009664,1.04e-11,6;UBERON:0002296,1.04e-11,6;UBERON:0005602,1.04e-11,6;UBERON:0001179,1.04e-11,6;UBERON:0006293,1.04e-11,6;UBERON:0002371,1.45e-11,16;UBERON:0002390,6.61e-10,45;UBERON:0003061,6.61e-10,45;UBERON:0000029,4.39e-09,1;UBERON:0001097,4.39e-09,1;UBERON:0003968,4.39e-09,1;UBERON:0001467,4.39e-09,1;UBERON:0001474,2.08e-08,22;UBERON:0004765,2.08e-08,22;UBERON:0001434,2.08e-08,22;UBERON:0003887,3.03e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99865857089398,1.21485160433896,0.699561878128147,14.0380663584416,15.0825876966313,7.63901373236454,0.0850432901510698,0.297872853602656,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01339127269284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,51.26970096214,0.148442139064825,0,0,0,0.150722640552623,0,0,0,0,0.884610551949874,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0.432276099749388,0,0,0.114248512609729,0,0,0,0,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0.184753190166605,0,0,0,0,0.167506257441816,0,0,0,0,0.318909537314974,0.163863314715738,0.518054945597687,0.289298117163023,0,0,2.45882136509518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32745138339963,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,4.27177201994632,0,0,0.753473828018764,3.41735569302563,3.88922894451088,0.509935289981566,0.279902904647316,0.138199973804424,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0.0762068066549998,0,0,0,0.233753804363138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0.135804113845862,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:59300300..59300323,+ | |||
}} |
Revision as of 05:18, 14 September 2013
Short description: | p@chr4:59300300..59300323, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:59300300..59300323, + |
Coexpression cluster: | MCL_coexpression_mm9:63 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
megakaryocyte progenitor cell | 1.14e-30 | 6 |
megakaryocyte | 1.14e-30 | 6 |
megakaryocyte-erythroid progenitor cell | 1.67e-20 | 9 |
myeloid lineage restricted progenitor cell | 3.17e-14 | 13 |
myeloid cell | 1.45e-11 | 16 |
hematopoietic lineage restricted progenitor cell | 2.27e-10 | 25 |
CD9-positive, CD41-positive megakaryocyte cell | 2.47e-10 | 3 |
Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell | 2.47e-10 | 3 |
Kit-positive megakaryocyte progenitor cell | 2.47e-10 | 3 |
common myeloid progenitor | 9.67e-10 | 19 |
lymphocyte of B lineage | 1.74e-08 | 1 |
B cell | 1.74e-08 | 1 |
pro-B cell | 1.74e-08 | 1 |
hematopoietic cell | 4.81e-08 | 32 |
hematopoietic oligopotent progenitor cell | 4.81e-08 | 32 |
hematopoietic stem cell | 4.81e-08 | 32 |
hematopoietic multipotent progenitor cell | 4.81e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 8.42e-12 | 48 |
immune system | 8.42e-12 | 48 |
spleen | 1.04e-11 | 6 |
cavity lining | 1.04e-11 | 6 |
serous membrane | 1.04e-11 | 6 |
gastrointestinal system mesentery | 1.04e-11 | 6 |
stomach region | 1.04e-11 | 6 |
mesentery | 1.04e-11 | 6 |
gastrointestinal system serosa | 1.04e-11 | 6 |
mesentery of stomach | 1.04e-11 | 6 |
gut mesentery | 1.04e-11 | 6 |
dorsal mesentery | 1.04e-11 | 6 |
dorsal mesogastrium | 1.04e-11 | 6 |
peritoneal cavity | 1.04e-11 | 6 |
spleen primordium | 1.04e-11 | 6 |
bone marrow | 1.45e-11 | 16 |
hematopoietic system | 6.61e-10 | 45 |
blood island | 6.61e-10 | 45 |
lymph node | 4.39e-09 | 1 |
axillary lymph node | 4.39e-09 | 1 |
peripheral lymph node | 4.39e-09 | 1 |
shoulder | 4.39e-09 | 1 |
bone element | 2.08e-08 | 22 |
skeletal element | 2.08e-08 | 22 |
skeletal system | 2.08e-08 | 22 |
intraembryonic coelom | 3.03e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.