FFCP PHASE1:Mm9::chr5:138199339..138199346,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=78829|HGNC=|MCL_coexpression_id=205|UniProt=F6VXN4|association_with_transcript=-26bp_to_ENSMUST00000141733_5end|description=CAGE_peak_18_at_Tsc22d4_5end|id=chr5:138199339..138199346,+|ontology_enrichment_celltype=CL:0000221!2.11e-20!44;CL:0000133!2.11e-20!44;CL:0002319!3.24e-19!43;CL:0000055!5.73e-17!50;CL:0000333!9.84e-14!10;CL:0000095!9.84e-14!10;CL:0000243!9.84e-14!10;CL:0000123!9.84e-14!10;CL:0000125!9.84e-14!10;CL:0000030!9.84e-14!10;CL:0000339!9.84e-14!10;CL:0002453!3.10e-11!8;CL:0002321!4.70e-11!70;CL:0000220!4.70e-11!70;CL:0000540!2.93e-09!33;CL:0000047!2.93e-09!33;CL:0000031!2.93e-09!33;CL:0000404!2.93e-09!33;CL:0000393!2.77e-08!39;CL:0000211!2.77e-08!39;CL:0000128!6.54e-08!6;CL:0000126!6.54e-08!6;CL:0000127!6.54e-08!6|ontology_enrichment_celltype_v019_2=CL:0000333,1.78e-31,10;CL:0000095,1.78e-31,10;CL:0000243,1.78e-31,10;CL:0000123,1.78e-31,10;CL:0000125,1.78e-31,10;CL:0000030,1.78e-31,10;CL:0000339,1.78e-31,10;CL:0002453,8.91e-31,8;CL:0002319,2.24e-27,43;CL:0000221,1.05e-26,44;CL:0000133,1.05e-26,44;CL:0000128,5.60e-21,6;CL:0000126,5.60e-21,6;CL:0000127,5.60e-21,6;CL:0002321,5.63e-16,70;CL:0000878,1.08e-11,2;CL:0000129,1.08e-11,2;CL:0002605,2.46e-11,2;CL:0002604,2.46e-11,2;CL:0002603,3.90e-11,2;CL:0002611,4.38e-11,2;CL:0000117,8.35e-10,23;CL:0000337,8.35e-10,23;CL:0000540,1.61e-08,33;CL:0000047,1.61e-08,33;CL:0000031,1.61e-08,33;CL:0000404,1.61e-08,33;CL:0002614,2.40e-07,3;CL:0002612,2.99e-07,3;CL:0000393,4.64e-07,39;CL:0000211,4.64e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.73e-31!75;UBERON:0001016!1.73e-31!75;UBERON:0001017!4.34e-29!73;UBERON:0005743!4.34e-29!73;UBERON:0004121!1.49e-22!102;UBERON:0000924!1.49e-22!102;UBERON:0006601!1.49e-22!102;UBERON:0001049!4.03e-18!52;UBERON:0005068!4.03e-18!52;UBERON:0006241!4.03e-18!52;UBERON:0007135!4.03e-18!52;UBERON:0000955!6.16e-17!50;UBERON:0006238!6.16e-17!50;UBERON:0002616!5.53e-16!49;UBERON:0003076!1.67e-15!12;UBERON:0003057!1.67e-15!12;UBERON:0000033!3.58e-14!63;UBERON:0002346!2.66e-13!71;UBERON:0003075!2.66e-13!71;UBERON:0007284!2.66e-13!71;UBERON:0002020!1.19e-10!34;UBERON:0002298!1.32e-09!6;UBERON:0004733!1.46e-09!6;UBERON:0004732!1.46e-09!6;UBERON:0002028!1.46e-09!6;UBERON:0007277!1.46e-09!6;UBERON:0007811!2.49e-08!86;UBERON:0000010!5.53e-08!11;UBERON:0003080!1.31e-07!40;UBERON:0002240!1.57e-07!6;UBERON:0005174!1.57e-07!6;UBERON:0001137!1.57e-07!6;UBERON:0000153!5.22e-07!94;UBERON:0002791!5.31e-07!29;UBERON:0003528!5.31e-07!29;UBERON:0001893!5.31e-07!29;UBERON:0002780!5.59e-07!39;UBERON:0001890!5.59e-07!39;UBERON:0006240!5.59e-07!39;UBERON:0002950!6.99e-07!4;UBERON:0001891!6.99e-07!4;UBERON:0009616!6.99e-07!4;UBERON:0002037!7.77e-07!4;UBERON:0002680!7.77e-07!4;UBERON:0001895!7.77e-07!4;UBERON:0010092!7.77e-07!4;UBERON:0006215!7.77e-07!4|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.57e-19,75;UBERON:0001017,1.75e-17,73;UBERON:0001948,6.17e-16,5;UBERON:0002315,6.17e-16,5;UBERON:0004121,1.19e-14,95;UBERON:0000924,1.19e-14,95;UBERON:0006601,1.19e-14,95;UBERON:0003076,1.68e-14,12;UBERON:0003057,1.68e-14,12;UBERON:0000073,1.13e-13,54;UBERON:0002240,2.54e-13,6;UBERON:0005174,2.54e-13,6;UBERON:0001137,2.54e-13,6;UBERON:0002020,3.88e-13,34;UBERON:0001049,5.56e-12,52;UBERON:0005068,5.56e-12,52;UBERON:0006241,5.56e-12,52;UBERON:0007135,5.56e-12,52;UBERON:0002346,4.18e-11,64;UBERON:0003075,4.18e-11,64;UBERON:0007284,4.18e-11,64;UBERON:0002256,4.38e-11,2;UBERON:0010371,1.72e-09,73;UBERON:0002038,2.40e-07,3;UBERON:0009663,2.40e-07,3;UBERON:0009661,2.40e-07,3;UBERON:0000125,2.40e-07,3;UBERON:0002308,2.40e-07,3;UBERON:0002257,2.99e-07,3;UBERON:0010314,4.08e-07,92|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,4.14247797122848,3.29529274101708,3.88859798148567,1.25987779462826,0,0,0,0,0,0,0.515672092277442,0,0,0,0,0,0,0,0,4.19440154725767,12.2949857702897,0,0,0,3.14216082844184,2.65042249141936,0,0,0,3.30347642998166,0.510749352340751,0.307213066512487,0,0,0,0.837548997004143,1.68828783009504,1.22238598221448,1.17851434189467,1.42371680799103,0,1.13589289999776,0.226714680320357,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.149790639404823,0,0,0.173824320192276,0,0.20778804455956,0.324482526135515,0,0.248813941220186,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0.630869845692382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0.963303539926752,0.586058432961016,0,0,0,0,1.07711698866399,0.477937595905104,0.222798674082394,0.849229592366497,0,0.584511715822624,0.395287777946524,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0.356737635204141,0,0,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0,0.0826534557253359,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,1.38097570952153,1.71868654031819,0.343706364687375,0.685082519770642,0,0,0.900642406448441,0,0,0,0,0,0,0,0.183843508450014,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0,0.191288332068843,0.441182838239031,0|short_description=p18@Tsc22d4}} | ||
|EntrezGene=78829 | |||
|HGNC= | |||
|MCL_coexpression_id=205 | |||
|UniProt=F6VXN4 | |||
|association_with_transcript=-26bp_to_ENSMUST00000141733_5end | |||
|description=CAGE_peak_18_at_Tsc22d4_5end | |||
|id=chr5:138199339..138199346,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.11e-20!44;CL:0000133!2.11e-20!44;CL:0002319!3.24e-19!43;CL:0000055!5.73e-17!50;CL:0000333!9.84e-14!10;CL:0000095!9.84e-14!10;CL:0000243!9.84e-14!10;CL:0000123!9.84e-14!10;CL:0000125!9.84e-14!10;CL:0000030!9.84e-14!10;CL:0000339!9.84e-14!10;CL:0002453!3.10e-11!8;CL:0002321!4.70e-11!70;CL:0000220!4.70e-11!70;CL:0000540!2.93e-09!33;CL:0000047!2.93e-09!33;CL:0000031!2.93e-09!33;CL:0000404!2.93e-09!33;CL:0000393!2.77e-08!39;CL:0000211!2.77e-08!39;CL:0000128!6.54e-08!6;CL:0000126!6.54e-08!6;CL:0000127!6.54e-08!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,1.78e-31,10;CL:0000095,1.78e-31,10;CL:0000243,1.78e-31,10;CL:0000123,1.78e-31,10;CL:0000125,1.78e-31,10;CL:0000030,1.78e-31,10;CL:0000339,1.78e-31,10;CL:0002453,8.91e-31,8;CL:0002319,2.24e-27,43;CL:0000221,1.05e-26,44;CL:0000133,1.05e-26,44;CL:0000128,5.60e-21,6;CL:0000126,5.60e-21,6;CL:0000127,5.60e-21,6;CL:0002321,5.63e-16,70;CL:0000878,1.08e-11,2;CL:0000129,1.08e-11,2;CL:0002605,2.46e-11,2;CL:0002604,2.46e-11,2;CL:0002603,3.90e-11,2;CL:0002611,4.38e-11,2;CL:0000117,8.35e-10,23;CL:0000337,8.35e-10,23;CL:0000540,1.61e-08,33;CL:0000047,1.61e-08,33;CL:0000031,1.61e-08,33;CL:0000404,1.61e-08,33;CL:0002614,2.40e-07,3;CL:0002612,2.99e-07,3;CL:0000393,4.64e-07,39;CL:0000211,4.64e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.73e-31!75;UBERON:0001016!1.73e-31!75;UBERON:0001017!4.34e-29!73;UBERON:0005743!4.34e-29!73;UBERON:0004121!1.49e-22!102;UBERON:0000924!1.49e-22!102;UBERON:0006601!1.49e-22!102;UBERON:0001049!4.03e-18!52;UBERON:0005068!4.03e-18!52;UBERON:0006241!4.03e-18!52;UBERON:0007135!4.03e-18!52;UBERON:0000955!6.16e-17!50;UBERON:0006238!6.16e-17!50;UBERON:0002616!5.53e-16!49;UBERON:0003076!1.67e-15!12;UBERON:0003057!1.67e-15!12;UBERON:0000033!3.58e-14!63;UBERON:0002346!2.66e-13!71;UBERON:0003075!2.66e-13!71;UBERON:0007284!2.66e-13!71;UBERON:0002020!1.19e-10!34;UBERON:0002298!1.32e-09!6;UBERON:0004733!1.46e-09!6;UBERON:0004732!1.46e-09!6;UBERON:0002028!1.46e-09!6;UBERON:0007277!1.46e-09!6;UBERON:0007811!2.49e-08!86;UBERON:0000010!5.53e-08!11;UBERON:0003080!1.31e-07!40;UBERON:0002240!1.57e-07!6;UBERON:0005174!1.57e-07!6;UBERON:0001137!1.57e-07!6;UBERON:0000153!5.22e-07!94;UBERON:0002791!5.31e-07!29;UBERON:0003528!5.31e-07!29;UBERON:0001893!5.31e-07!29;UBERON:0002780!5.59e-07!39;UBERON:0001890!5.59e-07!39;UBERON:0006240!5.59e-07!39;UBERON:0002950!6.99e-07!4;UBERON:0001891!6.99e-07!4;UBERON:0009616!6.99e-07!4;UBERON:0002037!7.77e-07!4;UBERON:0002680!7.77e-07!4;UBERON:0001895!7.77e-07!4;UBERON:0010092!7.77e-07!4;UBERON:0006215!7.77e-07!4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.57e-19,75;UBERON:0001017,1.75e-17,73;UBERON:0001948,6.17e-16,5;UBERON:0002315,6.17e-16,5;UBERON:0004121,1.19e-14,95;UBERON:0000924,1.19e-14,95;UBERON:0006601,1.19e-14,95;UBERON:0003076,1.68e-14,12;UBERON:0003057,1.68e-14,12;UBERON:0000073,1.13e-13,54;UBERON:0002240,2.54e-13,6;UBERON:0005174,2.54e-13,6;UBERON:0001137,2.54e-13,6;UBERON:0002020,3.88e-13,34;UBERON:0001049,5.56e-12,52;UBERON:0005068,5.56e-12,52;UBERON:0006241,5.56e-12,52;UBERON:0007135,5.56e-12,52;UBERON:0002346,4.18e-11,64;UBERON:0003075,4.18e-11,64;UBERON:0007284,4.18e-11,64;UBERON:0002256,4.38e-11,2;UBERON:0010371,1.72e-09,73;UBERON:0002038,2.40e-07,3;UBERON:0009663,2.40e-07,3;UBERON:0009661,2.40e-07,3;UBERON:0000125,2.40e-07,3;UBERON:0002308,2.40e-07,3;UBERON:0002257,2.99e-07,3;UBERON:0010314,4.08e-07,92 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,4.14247797122848,3.29529274101708,3.88859798148567,1.25987779462826,0,0,0,0,0,0,0.515672092277442,0,0,0,0,0,0,0,0,4.19440154725767,12.2949857702897,0,0,0,3.14216082844184,2.65042249141936,0,0,0,3.30347642998166,0.510749352340751,0.307213066512487,0,0,0,0.837548997004143,1.68828783009504,1.22238598221448,1.17851434189467,1.42371680799103,0,1.13589289999776,0.226714680320357,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0.149790639404823,0,0,0.173824320192276,0,0.20778804455956,0.324482526135515,0,0.248813941220186,0,0,0,0,0,0,0,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0.630869845692382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0.963303539926752,0.586058432961016,0,0,0,0,1.07711698866399,0.477937595905104,0.222798674082394,0.849229592366497,0,0.584511715822624,0.395287777946524,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0,0,0,0.356737635204141,0,0,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0,0.0826534557253359,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,1.38097570952153,1.71868654031819,0.343706364687375,0.685082519770642,0,0,0.900642406448441,0,0,0,0,0,0,0,0.183843508450014,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0,0.191288332068843,0.441182838239031,0 | |||
|short_description=p18@Tsc22d4 | |||
}} |
Revision as of 06:48, 14 September 2013
Short description: | p18@Tsc22d4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_18_at_Tsc22d4_5end |
Coexpression cluster: | MCL_coexpression_mm9:205 |
Association with transcript: | -26bp_to_ENSMUST00000141733_5end |
EntrezGene: | Tsc22d4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 3.57e-19 | 75 |
central nervous system | 1.75e-17 | 73 |
regional part of spinal cord | 6.17e-16 | 5 |
gray matter of spinal cord | 6.17e-16 | 5 |
ectoderm-derived structure | 1.19e-14 | 95 |
ectoderm | 1.19e-14 | 95 |
presumptive ectoderm | 1.19e-14 | 95 |
posterior neural tube | 1.68e-14 | 12 |
chordal neural plate | 1.68e-14 | 12 |
regional part of nervous system | 1.13e-13 | 54 |
spinal cord | 2.54e-13 | 6 |
dorsal region element | 2.54e-13 | 6 |
dorsum | 2.54e-13 | 6 |
gray matter | 3.88e-13 | 34 |
neural tube | 5.56e-12 | 52 |
neural rod | 5.56e-12 | 52 |
future spinal cord | 5.56e-12 | 52 |
neural keel | 5.56e-12 | 52 |
neurectoderm | 4.18e-11 | 64 |
neural plate | 4.18e-11 | 64 |
presumptive neural plate | 4.18e-11 | 64 |
dorsal horn of spinal cord | 4.38e-11 | 2 |
ecto-epithelium | 1.72e-09 | 73 |
substantia nigra | 2.40e-07 | 3 |
telencephalic nucleus | 2.40e-07 | 3 |
midbrain nucleus | 2.40e-07 | 3 |
neural nucleus | 2.40e-07 | 3 |
nucleus of brain | 2.40e-07 | 3 |
ventral horn of spinal cord | 2.99e-07 | 3 |
structure with developmental contribution from neural crest | 4.08e-07 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.