FFCP PHASE1:Mm9::chr6:91106766..91106821,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=232232|HGNC=|MCL_coexpression_id=1|UniProt=D3Z2G7,Q543U1,Q91WA3|association_with_transcript=0bp_to_ENSMUST00000143621,ENSMUST00000154389,NM_144919,uc009cxv.1_5end|description=CAGE_peak_1_at_Hdac11_5end|id=chr6:91106766..91106821,+|ontology_enrichment_celltype=CL:0000117!3.29e-08!23;CL:0000337!3.29e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,3.23e-08,23;CL:0000337,3.23e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.75e-18!73;UBERON:0005743!9.75e-18!73;UBERON:0001049!6.95e-17!52;UBERON:0005068!6.95e-17!52;UBERON:0006241!6.95e-17!52;UBERON:0007135!6.95e-17!52;UBERON:0000033!4.57e-16!63;UBERON:0000073!5.31e-16!75;UBERON:0001016!5.31e-16!75;UBERON:0000955!5.94e-16!50;UBERON:0006238!5.94e-16!50;UBERON:0002616!2.28e-15!49;UBERON:0004111!6.80e-13!122;UBERON:0002346!1.19e-12!71;UBERON:0003075!1.19e-12!71;UBERON:0007284!1.19e-12!71;UBERON:0000025!5.41e-12!114;UBERON:0002020!1.02e-11!34;UBERON:0003080!1.02e-11!40;UBERON:0003056!1.05e-11!49;UBERON:0004121!3.17e-11!102;UBERON:0000924!3.17e-11!102;UBERON:0006601!3.17e-11!102;UBERON:0002780!4.29e-11!39;UBERON:0001890!4.29e-11!39;UBERON:0006240!4.29e-11!39;UBERON:0002791!4.27e-09!29;UBERON:0003528!4.27e-09!29;UBERON:0001893!4.27e-09!29;UBERON:0000468!1.21e-07!333;UBERON:0002021!8.89e-07!10;UBERON:0000411!8.89e-07!10;UBERON:0001950!8.89e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.07e-18,54;UBERON:0001017,9.32e-18,73;UBERON:0001049,6.66e-17,52;UBERON:0005068,6.66e-17,52;UBERON:0006241,6.66e-17,52;UBERON:0007135,6.66e-17,52;UBERON:0002346,8.86e-17,64;UBERON:0003075,8.86e-17,64;UBERON:0007284,8.86e-17,64;UBERON:0001016,5.34e-16,75;UBERON:0010371,5.24e-15,73;UBERON:0004121,3.10e-14,95;UBERON:0000924,3.10e-14,95;UBERON:0006601,3.10e-14,95;UBERON:0000955,4.74e-14,47;UBERON:0006238,4.74e-14,47;UBERON:0002616,1.74e-13,46;UBERON:0004111,7.32e-13,122;UBERON:0000025,5.83e-12,114;UBERON:0002020,9.87e-12,34;UBERON:0003080,9.94e-12,40;UBERON:0003056,1.03e-11,49;UBERON:0002780,4.18e-11,39;UBERON:0001890,4.18e-11,39;UBERON:0006240,4.18e-11,39;UBERON:0003528,4.18e-09,29;UBERON:0002791,4.18e-09,29;UBERON:0001893,4.18e-09,29;UBERON:0010314,8.70e-09,92;UBERON:0011216,2.36e-07,194;UBERON:0002021,8.76e-07,10;UBERON:0000411,8.76e-07,10;UBERON:0001950,8.76e-07,10|phase1_expression=10.089377367602,6.63053274514786,5.0049916332849,23.8946726932396,30.0537437967808,12.4230661214798,10.5125688267987,1.29123323441576,0,0,0,0,0.684802919724823,0.34968160967599,0.999329285446988,0.809901069559304,0,1.10411757875383,2.05671650408608,1.27316895539409,23.216818211242,0.496454756004426,0.261199789138935,8.95957567643077,8.94696196161963,1.72269589234506,4.73838195774982,7.11055067863434,11.4014051673824,12.0974462284767,5.32153225572731,1.90509202037889,5.53558308826113,0,23.3969811998532,16.7896991812077,19.1919194886627,0,0,0,0,0,0,6.92432498865675,6.48812359804893,2.9367480345869,6.25913075478431,6.75877984779384,6.59058548203415,6.02732687130279,6.15940255151595,2.87505128729943,1.17447824240415,0,0,0.771778308107841,3.15186783932632,1.54701627683233,16.7922662513466,19.0436752537932,16.4796164911607,2.71075625655306,0.889294796111139,2.6996991518442,0.988866362566974,1.4209602298922,5.69240209984969,13.4476406862544,6.22137673850866,6.07526722492608,6.30974884054146,56.2732439275493,51.6832385826776,7.59442955132715,8.91362880469598,8.27296907949019,67.1706874096271,74.4417181036644,81.2578560925528,23.8714180791651,22.5974479697952,12.5019208933622,92.6887556684585,101.860032415734,83.1222467905847,32.4091444021034,33.8844600301865,25.3503246322409,0.37863096666592,0.302286240427142,14.4932244350839,20.6501730475533,12.2394840067395,27.5248627735287,21.4426217757731,25.0895056774508,16.8533304158102,3.2381761289831,4.67614808285164,2.12003744706204,11.2674735821344,5.13305909657271,0,0,1.94841936910093,2.78695852022608,2.02209778005913,14.3871688446016,3.10725460376606,5.93768556259299,4.3371331691534,2.43572382649713,1.15307748628029,2.41156224884196,3.05730638552832,3.14166478324189,0,2.16899035379867,4.42305275974937,5.50007289821191,3.97514733228708,2.42437626567611,7.45567044872489,40.4037499875935,35.3964934514739,12.2619386500124,0.718890747035522,0.599902730993408,0.381210681219194,84.48192062432,44.3775584734068,13.3193613239636,46.2372691711455,51.3988069233964,77.7127286652755,61.8139212288157,9.06370338267815,11.1966273549084,28.0522261861379,34.7229062212682,6.8963834770233,6.89706313300419,6.66229880279792,7.68594570962147,9.25296388458059,5.25266253167884,10.1197862524507,19.4027528054262,7.76044774558232,9.45530400839096,9.50136070485324,12.4941567483718,8.61946472599353,8.00979983000983,5.35033554660653,5.57295947091781,0,0.257347907114715,0.568326998791185,6.62802472113606,3.28336483973535,6.12211008967451,6.39210786080068,7.67380503814875,6.01641740260775,8.60375595576509,6.9751084363901,7.23945122676451,5.43047504714485,5.41752631461014,5.26947262048062,5.99419948443863,3.5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| ||
|EntrezGene=232232 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=D3Z2G7,Q543U1,Q91WA3 | |||
|association_with_transcript=0bp_to_ENSMUST00000143621,ENSMUST00000154389,NM_144919,uc009cxv.1_5end | |||
|description=CAGE_peak_1_at_Hdac11_5end | |||
|id=chr6:91106766..91106821,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.29e-08!23;CL:0000337!3.29e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.23e-08,23;CL:0000337,3.23e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.75e-18!73;UBERON:0005743!9.75e-18!73;UBERON:0001049!6.95e-17!52;UBERON:0005068!6.95e-17!52;UBERON:0006241!6.95e-17!52;UBERON:0007135!6.95e-17!52;UBERON:0000033!4.57e-16!63;UBERON:0000073!5.31e-16!75;UBERON:0001016!5.31e-16!75;UBERON:0000955!5.94e-16!50;UBERON:0006238!5.94e-16!50;UBERON:0002616!2.28e-15!49;UBERON:0004111!6.80e-13!122;UBERON:0002346!1.19e-12!71;UBERON:0003075!1.19e-12!71;UBERON:0007284!1.19e-12!71;UBERON:0000025!5.41e-12!114;UBERON:0002020!1.02e-11!34;UBERON:0003080!1.02e-11!40;UBERON:0003056!1.05e-11!49;UBERON:0004121!3.17e-11!102;UBERON:0000924!3.17e-11!102;UBERON:0006601!3.17e-11!102;UBERON:0002780!4.29e-11!39;UBERON:0001890!4.29e-11!39;UBERON:0006240!4.29e-11!39;UBERON:0002791!4.27e-09!29;UBERON:0003528!4.27e-09!29;UBERON:0001893!4.27e-09!29;UBERON:0000468!1.21e-07!333;UBERON:0002021!8.89e-07!10;UBERON:0000411!8.89e-07!10;UBERON:0001950!8.89e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.07e-18,54;UBERON:0001017,9.32e-18,73;UBERON:0001049,6.66e-17,52;UBERON:0005068,6.66e-17,52;UBERON:0006241,6.66e-17,52;UBERON:0007135,6.66e-17,52;UBERON:0002346,8.86e-17,64;UBERON:0003075,8.86e-17,64;UBERON:0007284,8.86e-17,64;UBERON:0001016,5.34e-16,75;UBERON:0010371,5.24e-15,73;UBERON:0004121,3.10e-14,95;UBERON:0000924,3.10e-14,95;UBERON:0006601,3.10e-14,95;UBERON:0000955,4.74e-14,47;UBERON:0006238,4.74e-14,47;UBERON:0002616,1.74e-13,46;UBERON:0004111,7.32e-13,122;UBERON:0000025,5.83e-12,114;UBERON:0002020,9.87e-12,34;UBERON:0003080,9.94e-12,40;UBERON:0003056,1.03e-11,49;UBERON:0002780,4.18e-11,39;UBERON:0001890,4.18e-11,39;UBERON:0006240,4.18e-11,39;UBERON:0003528,4.18e-09,29;UBERON:0002791,4.18e-09,29;UBERON:0001893,4.18e-09,29;UBERON:0010314,8.70e-09,92;UBERON:0011216,2.36e-07,194;UBERON:0002021,8.76e-07,10;UBERON:0000411,8.76e-07,10;UBERON:0001950,8.76e-07,10 | |||
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| |||
|short_description=p1@Hdac11 | |||
}} |
Revision as of 10:58, 14 September 2013
Short description: | p1@Hdac11 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hdac11_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000143621, ENSMUST00000154389, NM_144919, uc009cxv.1_5end |
EntrezGene: | Hdac11 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.23e-08 | 23 |
neuroblast (sensu Vertebrata) | 3.23e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.07e-18 | 54 |
central nervous system | 9.32e-18 | 73 |
neural tube | 6.66e-17 | 52 |
neural rod | 6.66e-17 | 52 |
future spinal cord | 6.66e-17 | 52 |
neural keel | 6.66e-17 | 52 |
neurectoderm | 8.86e-17 | 64 |
neural plate | 8.86e-17 | 64 |
presumptive neural plate | 8.86e-17 | 64 |
nervous system | 5.34e-16 | 75 |
ecto-epithelium | 5.24e-15 | 73 |
ectoderm-derived structure | 3.10e-14 | 95 |
ectoderm | 3.10e-14 | 95 |
presumptive ectoderm | 3.10e-14 | 95 |
brain | 4.74e-14 | 47 |
future brain | 4.74e-14 | 47 |
regional part of brain | 1.74e-13 | 46 |
anatomical conduit | 7.32e-13 | 122 |
tube | 5.83e-12 | 114 |
gray matter | 9.87e-12 | 34 |
anterior neural tube | 9.94e-12 | 40 |
pre-chordal neural plate | 1.03e-11 | 49 |
regional part of forebrain | 4.18e-11 | 39 |
forebrain | 4.18e-11 | 39 |
future forebrain | 4.18e-11 | 39 |
brain grey matter | 4.18e-09 | 29 |
regional part of telencephalon | 4.18e-09 | 29 |
telencephalon | 4.18e-09 | 29 |
structure with developmental contribution from neural crest | 8.70e-09 | 92 |
organ system subdivision | 2.36e-07 | 194 |
occipital lobe | 8.76e-07 | 10 |
visual cortex | 8.76e-07 | 10 |
neocortex | 8.76e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.