FFCP PHASE1:Mm9::chr8:12395843..12395852,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20664|HGNC=|MCL_coexpression_id=1427|UniProt=Q80XF2|association_with_transcript=324bp_to_NM_009233,uc009kwa.2_5end|description=CAGE_peak_7_at_Sox1_5end|id=chr8:12395843..12395852,+|ontology_enrichment_celltype=CL:0002319!5.11e-22!43;CL:0000117!1.43e-21!23;CL:0000337!1.43e-21!23;CL:0000221!3.01e-21!44;CL:0000133!3.01e-21!44;CL:0000540!1.44e-17!33;CL:0000047!1.44e-17!33;CL:0000031!1.44e-17!33;CL:0000404!1.44e-17!33;CL:0000055!2.65e-17!50;CL:0000393!1.71e-13!39;CL:0000211!1.71e-13!39;CL:0002321!2.74e-09!70;CL:0000220!2.74e-09!70;CL:0002609!1.86e-08!6;CL:0002453!3.58e-07!8|ontology_enrichment_celltype_v019_2=CL:0000117,5.70e-24,23;CL:0000337,5.70e-24,23;CL:0002319,1.79e-22,43;CL:0000221,7.17e-22,44;CL:0000133,7.17e-22,44;CL:0002609,2.04e-19,6;CL:0000540,8.30e-16,33;CL:0000047,8.30e-16,33;CL:0000031,8.30e-16,33;CL:0000404,8.30e-16,33;CL:0000393,6.39e-13,39;CL:0000211,6.39e-13,39;CL:0002321,3.08e-12,70;CL:0002608,8.88e-11,3;CL:0000120,4.58e-10,3;CL:0002453,1.27e-09,8;CL:0000333,1.24e-07,10;CL:0000095,1.24e-07,10;CL:0000243,1.24e-07,10;CL:0000123,1.24e-07,10;CL:0000125,1.24e-07,10;CL:0000030,1.24e-07,10;CL:0000339,1.24e-07,10;CL:0000878,5.89e-07,2;CL:0000129,5.89e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.54e-43!73;UBERON:0005743!3.54e-43!73;UBERON:0000073!1.72e-41!75;UBERON:0001016!1.72e-41!75;UBERON:0004121!6.97e-35!102;UBERON:0000924!6.97e-35!102;UBERON:0006601!6.97e-35!102;UBERON:0001049!2.29e-33!52;UBERON:0005068!2.29e-33!52;UBERON:0006241!2.29e-33!52;UBERON:0007135!2.29e-33!52;UBERON:0000033!5.38e-33!63;UBERON:0000955!1.11e-31!50;UBERON:0006238!1.11e-31!50;UBERON:0002346!1.54e-31!71;UBERON:0003075!1.54e-31!71;UBERON:0007284!1.54e-31!71;UBERON:0002616!1.23e-30!49;UBERON:0003056!2.18e-28!49;UBERON:0003080!5.70e-24!40;UBERON:0002780!3.36e-23!39;UBERON:0001890!3.36e-23!39;UBERON:0006240!3.36e-23!39;UBERON:0002020!8.14e-21!34;UBERON:0007811!1.05e-19!86;UBERON:0000153!1.16e-16!94;UBERON:0002791!1.90e-16!29;UBERON:0003528!1.90e-16!29;UBERON:0001893!1.90e-16!29;UBERON:0000956!3.11e-11!21;UBERON:0001869!3.11e-11!21;UBERON:0000203!3.11e-11!21;UBERON:0003076!1.28e-09!12;UBERON:0003057!1.28e-09!12;UBERON:0001954!1.76e-08!7;UBERON:0003022!1.76e-08!7;UBERON:0002421!1.76e-08!7;UBERON:0000349!1.76e-08!7;UBERON:0002600!1.76e-08!7;UBERON:0001894!1.12e-07!10;UBERON:0006222!1.12e-07!10;UBERON:0002619!1.54e-07!17;UBERON:0000025!1.60e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.32e-32,73;UBERON:0001016,1.33e-31,75;UBERON:0004121,7.23e-24,95;UBERON:0000924,7.23e-24,95;UBERON:0006601,7.23e-24,95;UBERON:0000073,7.74e-23,54;UBERON:0000955,7.59e-22,47;UBERON:0006238,7.59e-22,47;UBERON:0002616,4.14e-20,46;UBERON:0001049,2.07e-19,52;UBERON:0005068,2.07e-19,52;UBERON:0006241,2.07e-19,52;UBERON:0007135,2.07e-19,52;UBERON:0002780,6.61e-17,39;UBERON:0001890,6.61e-17,39;UBERON:0006240,6.61e-17,39;UBERON:0003080,2.13e-16,40;UBERON:0002346,5.54e-15,64;UBERON:0003075,5.54e-15,64;UBERON:0007284,5.54e-15,64;UBERON:0003528,2.39e-13,29;UBERON:0002791,2.39e-13,29;UBERON:0001893,2.39e-13,29;UBERON:0002020,5.17e-13,34;UBERON:0003056,9.17e-13,49;UBERON:0010371,1.28e-12,73;UBERON:0000369,5.41e-10,5;UBERON:0002435,5.41e-10,5;UBERON:0000204,5.41e-10,5;UBERON:0010082,5.41e-10,5;UBERON:0010314,3.79e-09,92;UBERON:0011216,5.93e-09,194;UBERON:0000956,1.36e-08,21;UBERON:0001869,1.36e-08,21;UBERON:0000203,1.36e-08,21;UBERON:0001954,9.43e-08,7;UBERON:0003022,9.43e-08,7;UBERON:0002421,9.43e-08,7;UBERON:0000349,9.43e-08,7;UBERON:0002600,9.43e-08,7;UBERON:0002037,3.49e-07,4;UBERON:0002680,3.49e-07,4;UBERON:0001895,3.49e-07,4;UBERON:0010092,3.49e-07,4;UBERON:0006215,3.49e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.57852828398938,0.878744730937887,0.58328969722285,1.81982348112971,2.87505128729943,0,0,0,0,0,0,2.22548106945558,2.64495489636016,2.53532561402472,0,0,0,0,0,1.19840044207362,3.07374644257244,4.35496371695606,3.51015439662396,1.68259969081106,0.856952953211411,1.76694832761291,3.06226998037385,3.73797336971122,4.5960939330501,2.20231761998777,1.14918604276669,0.614426133024974,3.03338461779446,1.64677758484337,0,0.558365998002762,0.56276261003168,0.61119299110724,0.883885756421003,0.711858403995515,0.745597783301202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17112318804619,1.25668024088073,0,0,0,0,0.599162557619291,1.83000241127451,2.38743269014442,0.869121600961382,0,1.66230435647648,1.46017136760982,0,0,0,0,0.780722657776222,0.229902104433473,0.180062129805349,0.753524089178575,0.408218994907967,0.384341160854549,0.281105173679186,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,2.46971069710283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,0.35163505977661,0,0,0,0,0.215423397732799,0,0.22279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| ||
|EntrezGene=20664 | |||
|HGNC= | |||
|MCL_coexpression_id=1427 | |||
|UniProt=Q80XF2 | |||
|association_with_transcript=324bp_to_NM_009233,uc009kwa.2_5end | |||
|description=CAGE_peak_7_at_Sox1_5end | |||
|id=chr8:12395843..12395852,+ | |||
|ontology_enrichment_celltype=CL:0002319!5.11e-22!43;CL:0000117!1.43e-21!23;CL:0000337!1.43e-21!23;CL:0000221!3.01e-21!44;CL:0000133!3.01e-21!44;CL:0000540!1.44e-17!33;CL:0000047!1.44e-17!33;CL:0000031!1.44e-17!33;CL:0000404!1.44e-17!33;CL:0000055!2.65e-17!50;CL:0000393!1.71e-13!39;CL:0000211!1.71e-13!39;CL:0002321!2.74e-09!70;CL:0000220!2.74e-09!70;CL:0002609!1.86e-08!6;CL:0002453!3.58e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.70e-24,23;CL:0000337,5.70e-24,23;CL:0002319,1.79e-22,43;CL:0000221,7.17e-22,44;CL:0000133,7.17e-22,44;CL:0002609,2.04e-19,6;CL:0000540,8.30e-16,33;CL:0000047,8.30e-16,33;CL:0000031,8.30e-16,33;CL:0000404,8.30e-16,33;CL:0000393,6.39e-13,39;CL:0000211,6.39e-13,39;CL:0002321,3.08e-12,70;CL:0002608,8.88e-11,3;CL:0000120,4.58e-10,3;CL:0002453,1.27e-09,8;CL:0000333,1.24e-07,10;CL:0000095,1.24e-07,10;CL:0000243,1.24e-07,10;CL:0000123,1.24e-07,10;CL:0000125,1.24e-07,10;CL:0000030,1.24e-07,10;CL:0000339,1.24e-07,10;CL:0000878,5.89e-07,2;CL:0000129,5.89e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.54e-43!73;UBERON:0005743!3.54e-43!73;UBERON:0000073!1.72e-41!75;UBERON:0001016!1.72e-41!75;UBERON:0004121!6.97e-35!102;UBERON:0000924!6.97e-35!102;UBERON:0006601!6.97e-35!102;UBERON:0001049!2.29e-33!52;UBERON:0005068!2.29e-33!52;UBERON:0006241!2.29e-33!52;UBERON:0007135!2.29e-33!52;UBERON:0000033!5.38e-33!63;UBERON:0000955!1.11e-31!50;UBERON:0006238!1.11e-31!50;UBERON:0002346!1.54e-31!71;UBERON:0003075!1.54e-31!71;UBERON:0007284!1.54e-31!71;UBERON:0002616!1.23e-30!49;UBERON:0003056!2.18e-28!49;UBERON:0003080!5.70e-24!40;UBERON:0002780!3.36e-23!39;UBERON:0001890!3.36e-23!39;UBERON:0006240!3.36e-23!39;UBERON:0002020!8.14e-21!34;UBERON:0007811!1.05e-19!86;UBERON:0000153!1.16e-16!94;UBERON:0002791!1.90e-16!29;UBERON:0003528!1.90e-16!29;UBERON:0001893!1.90e-16!29;UBERON:0000956!3.11e-11!21;UBERON:0001869!3.11e-11!21;UBERON:0000203!3.11e-11!21;UBERON:0003076!1.28e-09!12;UBERON:0003057!1.28e-09!12;UBERON:0001954!1.76e-08!7;UBERON:0003022!1.76e-08!7;UBERON:0002421!1.76e-08!7;UBERON:0000349!1.76e-08!7;UBERON:0002600!1.76e-08!7;UBERON:0001894!1.12e-07!10;UBERON:0006222!1.12e-07!10;UBERON:0002619!1.54e-07!17;UBERON:0000025!1.60e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.32e-32,73;UBERON:0001016,1.33e-31,75;UBERON:0004121,7.23e-24,95;UBERON:0000924,7.23e-24,95;UBERON:0006601,7.23e-24,95;UBERON:0000073,7.74e-23,54;UBERON:0000955,7.59e-22,47;UBERON:0006238,7.59e-22,47;UBERON:0002616,4.14e-20,46;UBERON:0001049,2.07e-19,52;UBERON:0005068,2.07e-19,52;UBERON:0006241,2.07e-19,52;UBERON:0007135,2.07e-19,52;UBERON:0002780,6.61e-17,39;UBERON:0001890,6.61e-17,39;UBERON:0006240,6.61e-17,39;UBERON:0003080,2.13e-16,40;UBERON:0002346,5.54e-15,64;UBERON:0003075,5.54e-15,64;UBERON:0007284,5.54e-15,64;UBERON:0003528,2.39e-13,29;UBERON:0002791,2.39e-13,29;UBERON:0001893,2.39e-13,29;UBERON:0002020,5.17e-13,34;UBERON:0003056,9.17e-13,49;UBERON:0010371,1.28e-12,73;UBERON:0000369,5.41e-10,5;UBERON:0002435,5.41e-10,5;UBERON:0000204,5.41e-10,5;UBERON:0010082,5.41e-10,5;UBERON:0010314,3.79e-09,92;UBERON:0011216,5.93e-09,194;UBERON:0000956,1.36e-08,21;UBERON:0001869,1.36e-08,21;UBERON:0000203,1.36e-08,21;UBERON:0001954,9.43e-08,7;UBERON:0003022,9.43e-08,7;UBERON:0002421,9.43e-08,7;UBERON:0000349,9.43e-08,7;UBERON:0002600,9.43e-08,7;UBERON:0002037,3.49e-07,4;UBERON:0002680,3.49e-07,4;UBERON:0001895,3.49e-07,4;UBERON:0010092,3.49e-07,4;UBERON:0006215,3.49e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.57852828398938,0.878744730937887,0.58328969722285,1.81982348112971,2.87505128729943,0,0,0,0,0,0,2.22548106945558,2.64495489636016,2.53532561402472,0,0,0,0,0,1.19840044207362,3.07374644257244,4.35496371695606,3.51015439662396,1.68259969081106,0.856952953211411,1.76694832761291,3.06226998037385,3.73797336971122,4.5960939330501,2.20231761998777,1.14918604276669,0.614426133024974,3.03338461779446,1.64677758484337,0,0.558365998002762,0.56276261003168,0.61119299110724,0.883885756421003,0.711858403995515,0.745597783301202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17112318804619,1.25668024088073,0,0,0,0,0.599162557619291,1.83000241127451,2.38743269014442,0.869121600961382,0,1.66230435647648,1.46017136760982,0,0,0,0,0.780722657776222,0.229902104433473,0.180062129805349,0.753524089178575,0.408218994907967,0.384341160854549,0.281105173679186,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841159794256509,2.46971069710283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,0.35163505977661,0,0,0,0,0.215423397732799,0,0.222798674082394,0.283076530788832,0,0,0.395287777946524,1.28528526568723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,2.06973894052407,1.07168517515796,0.886701168211368,0.713475270408282,0.658196082408484,0.304464949114599,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,0,0,0,0.685082519770642,0.755393897389701,1.35004500046361,0.45032120322422,0,0,0.518936737920883,0.798049746802062,0.170733605754134,0,0.419226325255965,0.183843508450014,0,0.206035057238894,0,0.252697211763798,0,0.188626341386076,0.280924522409647,0.256100609619477,0.229741875822453,0,0.463537303779422,0.192909220463705,0.412085900803307,0.147198920134397,0.342869252385415,0,0,0.436039249896986,0.0941093804153306,0.0846146078916765,0,0.263069711437843,0.271608227691724,0,0.118635018124174,0.0985044823755635,0,0,0,0.499621155875892,0.233931608445408,0,0,0,0 | |||
|short_description=p7@Sox1 | |||
}} |
Revision as of 14:59, 14 September 2013
Short description: | p7@Sox1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Sox1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1427 |
Association with transcript: | 324bp_to_NM_009233, uc009kwa.2_5end |
EntrezGene: | Sox1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.70e-24 | 23 |
neuroblast (sensu Vertebrata) | 5.70e-24 | 23 |
neural cell | 1.79e-22 | 43 |
ectodermal cell | 7.17e-22 | 44 |
neurectodermal cell | 7.17e-22 | 44 |
neuron of cerebral cortex | 2.04e-19 | 6 |
neuron | 8.30e-16 | 33 |
neuronal stem cell | 8.30e-16 | 33 |
neuroblast | 8.30e-16 | 33 |
electrically signaling cell | 8.30e-16 | 33 |
electrically responsive cell | 6.39e-13 | 39 |
electrically active cell | 6.39e-13 | 39 |
embryonic cell | 3.08e-12 | 70 |
hippocampal neuron | 8.88e-11 | 3 |
granule cell | 4.58e-10 | 3 |
oligodendrocyte precursor cell | 1.27e-09 | 8 |
migratory neural crest cell | 1.24e-07 | 10 |
neuron associated cell | 1.24e-07 | 10 |
glial cell (sensu Vertebrata) | 1.24e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 1.24e-07 | 10 |
glial cell | 1.24e-07 | 10 |
glioblast | 1.24e-07 | 10 |
glioblast (sensu Vertebrata) | 1.24e-07 | 10 |
central nervous system macrophage | 5.89e-07 | 2 |
microglial cell | 5.89e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.