FFCP PHASE1:Mm9::chr8:73030609..73030665,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66462|HGNC=|MCL_coexpression_id=247|UniProt=Q9CYZ6,D3YZ60|association_with_transcript=0bp_to_ENSMUST00000075175,ENSMUST00000128620,ENSMUST00000135773,ENSMUST00000136913,NM_025577,uc009mal.1_5end|description=CAGE_peak_1_at_2810428I15Rik_5end|id=chr8:73030609..73030665,-|ontology_enrichment_celltype=CL:0002371!1.96e-23!118;CL:0000548!6.25e-23!115;CL:0000004!6.25e-23!115;CL:0000255!6.25e-23!115;CL:0000144!9.40e-22!121;CL:0000012!9.40e-22!121;CL:0002321!1.10e-19!70;CL:0000220!1.10e-19!70;CL:0000723!4.18e-18!91;CL:0000048!4.18e-18!91;CL:0000055!5.31e-18!50;CL:0000221!1.32e-15!44;CL:0000133!1.32e-15!44;CL:0002319!3.60e-15!43;CL:0000034!3.69e-15!97;CL:0000393!3.80e-13!39;CL:0000211!3.80e-13!39;CL:0000540!5.53e-11!33;CL:0000047!5.53e-11!33;CL:0000031!5.53e-11!33;CL:0000404!5.53e-11!33;CL:0000117!3.07e-09!23;CL:0000337!3.07e-09!23;CL:0000063!3.87e-08!66;CL:0000219!4.72e-07!54|ontology_enrichment_celltype_v019_2=CL:0002321,1.10e-19,70;CL:0000723,4.18e-18,91;CL:0000048,4.18e-18,91;CL:0000221,1.32e-15,44;CL:0000133,1.32e-15,44;CL:0002319,3.60e-15,43;CL:0000034,3.69e-15,97;CL:0000393,3.80e-13,39;CL:0000211,3.80e-13,39;CL:0000540,5.53e-11,33;CL:0000047,5.53e-11,33;CL:0000031,5.53e-11,33;CL:0000404,5.53e-11,33;CL:0000117,3.07e-09,23;CL:0000337,3.07e-09,23;CL:0000219,4.72e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.38e-13!73;UBERON:0005743!3.38e-13!73;UBERON:0000073!3.57e-13!75;UBERON:0001016!3.57e-13!75;UBERON:0002020!3.29e-09!34;UBERON:0004121!2.80e-08!102;UBERON:0000924!2.80e-08!102;UBERON:0006601!2.80e-08!102;UBERON:0002791!2.21e-07!29;UBERON:0003528!2.21e-07!29;UBERON:0001893!2.21e-07!29;UBERON:0001049!5.92e-07!52;UBERON:0005068!5.92e-07!52;UBERON:0006241!5.92e-07!52;UBERON:0007135!5.92e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.38e-13,73;UBERON:0001016,3.57e-13,75;UBERON:0002020,3.29e-09,34;UBERON:0004121,1.46e-08,95;UBERON:0000924,1.46e-08,95;UBERON:0006601,1.46e-08,95;UBERON:0010314,5.03e-08,92;UBERON:0000073,5.85e-08,54;UBERON:0003528,2.21e-07,29;UBERON:0002791,2.21e-07,29;UBERON:0001893,2.21e-07,29;UBERON:0001049,5.92e-07,52;UBERON:0005068,5.92e-07,52;UBERON:0006241,5.92e-07,52;UBERON:0007135,5.92e-07,52|phase1_expression=51.5679287677437,48.8565570695106,49.5949170934594,43.2523822168767,53.0949473743128,57.5825902657782,59.571223351859,50.0998494953316,8.869689495555,18.4910975794375,26.7100030431788,44.114003924421,38.8625656943837,43.7976216119177,31.645427372488,25.5118836911181,29.3815988813822,29.180250295637,24.8177124826387,29.2828859740641,34.18740264073,31.0780677258771,37.6127696360067,58.5572267423868,61.7110966070687,75.7986192631827,87.4446852202922,60.9783588501066,94.4416394698178,94.0072384004542,111.530446859618,67.9482820601805,40.5942759805816,0,53.1486980342345,56.1873101311704,57.1674197534633,37.6678467663217,64.0694982509516,28.2702821745851,41.764435650202,38.250547157673,30.5871522409627,55.1428062733029,43.8962112180498,37.8106309453064,106.405222831333,103.125898967951,58.4365246073695,53.2737923463537,75.312694834445,93.4391668372315,16.6104779997159,26.1130371124084,24.1987535382574,64.0575995729508,75.0717612639543,71.162748734287,51.3883810583378,74.5877280773566,70.3552857891859,89.4549564662509,80.0365316500025,165.131598121137,185.906876162591,202.486832759639,91.078433597595,108.349562100678,36.2913643079672,59.807630680939,42.0649922702764,82.5531344926992,87.0222051349357,47.2814484969723,43.801380255334,61.5876587028714,68.271846219621,44.4351936536453,51.6117951740978,51.5675385025058,51.6905186353615,48.4449434617787,94.3638536624668,95.1068810953539,61.4248956062777,50.3814881159972,45.9860528981103,51.446247047783,27.4128819866126,47.0055103864206,19.4209207430124,67.9734862815295,67.997133370775,81.4951819373104,44.8345728038892,36.2901778548842,68.5368770242949,70.899014192472,110.409051956219,89.3949123511161,59.1542363062058,30.7983545794363,17.8363667794652,28.4426681261332,38.7518963410073,34.4569417046134,29.3204178108574,53.323871828801,21.4918443427153,34.2901341239745,27.4106816290495,36.8403228757691,28.8269371570073,36.7763242948399,22.5770317700553,35.5636453462982,12.3597483867187,32.8240540208199,32.7305904221453,23.6179600923217,22.0841518460394,21.819386391085,33.550517019262,31.034764483224,24.2958179903608,26.5675337416935,36.5436129743057,58.7904676373539,41.5519642528922,30.5572904385838,31.1100409916666,29.2774640422974,32.8527965163402,32.2201476236216,37.6096360652804,28.8789448260609,21.3862664085664,25.6278359456792,49.7863834114339,34.7229062212682,23.291559290324,43.6813998423599,25.0286360429435,29.2367346601287,22.3159717216355,32.5408849523518,31.5774811766286,31.8205146008989,28.4549750671352,19.0997140969497,19.0027214097065,26.9610750885917,19.7413546950174,19.1538691587192,19.1377386859387,26.4715574868596,62.4969736708779,48.8961023517959,40.6353804135697,25.8907215669377,32.3645962773913,36.012412292203,23.9112182941062,30.695220152595,35.3271688512096,29.7643449280522,34.8755421819505,28.1404475104878,33.4056495324365,36.7735119537173,34.1299688188053,46.4915960012557,48.3010253640311,44.1539117721623,34.0669716673886,18.6257348406505,28.0855965536228,39.4031344328681,26.6610313169042,24.384850545346,18.8146493530256,21.781820659321,19.5692678583486,27.5827157863211,26.0990983849481,36.0690710845584,29.9088898472321,25.068515477185,28.8546848936298,26.0657628509724,26.152704034838,27.4814957091027,27.6915135391499,25.3631697993598,14.6520056375005,23.2162513743658,23.856155921618,18.0950415317022,17.8959400061648,27.0126570802672,24.4918015432545,30.2323051608411,46.2466098255952,20.5219480030796,22.8008434331315,19.5630037774823,21.5031728671813,21.4647672179651,28.0088436959562,19.5633373466551,9.72811360650212,36.2421065408268,8.62609239164127,34.9812490808393,39.6287844855492,43.6961458848503,41.2614051100398,33.7710464954357,24.3874211019918,41.8776020012771,21.0224819610213,27.3289588098053,24.6424760702927,21.1057884376688,19.5195785526531,12.8788207586147,25.2216230569906,25.2469746199603,18.656207932926,24.415633892645,29.5291318990681,22.9992003144603,72.3798162908507,60.9174365876955,19.6705709207614,19.591508987636,37.7293886471311,26.1382061100613,56.2296862641997,69.4295049812026,58.3690205920075,60.9084441102756,44.5926433306894,36.5622260867405,36.9845798976774,41.3291734951695,49.791716306012,40.0390525338497,34.3900366813475,35.3453448063988,21.8587731220734,31.5176118491042,21.6639655940256,18.1467135269789,39.8235415019888,32.2898246086125,36.2788268357701,29.610997521676,45.476491503639,27.9765984628974,23.0001180919717,33.808636841408,28.8762876491624,36.3442271626188,59.0344208019993,51.5677716240934,32.6822021523636,30.790447079354,38.5488877672608,32.1505552547388,21.4581682707151,24.0797903762795,25.0114511315224,28.0107753185431,20.6511103096065,17.1583977399694,49.1778327662565,33.307023094179,14.5317984026315,20.8682720251419,25.1875645846618,25.9342621597197,23.3184669303881,29.8534736236921,26.3141156428693,21.0514605322487,21.1121761201471,23.3576886685817,19.0004976532225,24.7080427063044,25.6667429290722,23.7917468950219,20.868196044468,43.9148484286952,24.0415355121663,20.128627245558,25.3812550931233,26.9723901858665,30.789121488211,30.6142066293543,25.2919574519528,46.3308017311732,26.0526096316504,30.4456263412594,9.01908701894705,18.3905351634094,31.6025716773056,21.7785330945333,35.6481112798538,27.2019362040153,20.4201595243612,21.4837234992518,20.8670095407165,8.45544422891021,12.0972602628303,30.3370675803051,37.3014396133902,31.3268419352723,27.1534520023592,20.2300166104254,21.6562676711579,25.7218261972733,22.4488081305357,24.8377466872443,25.4530734227699,22.2825869152418,22.9026019738418,23.4756893602404,24.3103956537663,32.6491752405904,22.4205812907805,34.0015516549913,15.9490385545875,29.3648182928929,33.2197981548592,17.5825559296574,18.2213122217206,33.103758866334,49.6981621503019,55.6993536173684,32.0821487526062,48.1188910562325,73.9889121352294,61.9422995859554,58.7269575201671,64.3959320610635,60.2679403948992,65.2377992807293,28.2301585428961,20.7492934168536,30.56131542999,19.9347507996001,30.1842954184295,37.5040757238029,31.3367886200277,36.8802752457621,34.9801938455079,32.5979403175299,32.1918710860604,29.2370829148418,29.4034333455431,26.2503124859964,21.7106072652218,28.1013277857013,22.481559233302,25.2711078807454,23.4888963457885,30.3229775476858,33.9440559861561,26.6213709239006,25.5126723243633,28.1972048266717,26.6329546575386,26.145913838528,28.3538357952797,27.0961802780978,27.5682351107099,25.812544496256,25.9810689691941,25.2171474881442,32.3292524104055,21.8460946072212,26.0423924824541,30.9765116643053,27.8378614050036,17.8342974860088,26.5890781575692,35.515218478242,52.8658665214561|short_description=p1@2810428I15Rik}} | ||
|EntrezGene=66462 | |||
|HGNC= | |||
|MCL_coexpression_id=247 | |||
|UniProt=Q9CYZ6,D3YZ60 | |||
|association_with_transcript=0bp_to_ENSMUST00000075175,ENSMUST00000128620,ENSMUST00000135773,ENSMUST00000136913,NM_025577,uc009mal.1_5end | |||
|description=CAGE_peak_1_at_2810428I15Rik_5end | |||
|id=chr8:73030609..73030665,- | |||
|ontology_enrichment_celltype=CL:0002371!1.96e-23!118;CL:0000548!6.25e-23!115;CL:0000004!6.25e-23!115;CL:0000255!6.25e-23!115;CL:0000144!9.40e-22!121;CL:0000012!9.40e-22!121;CL:0002321!1.10e-19!70;CL:0000220!1.10e-19!70;CL:0000723!4.18e-18!91;CL:0000048!4.18e-18!91;CL:0000055!5.31e-18!50;CL:0000221!1.32e-15!44;CL:0000133!1.32e-15!44;CL:0002319!3.60e-15!43;CL:0000034!3.69e-15!97;CL:0000393!3.80e-13!39;CL:0000211!3.80e-13!39;CL:0000540!5.53e-11!33;CL:0000047!5.53e-11!33;CL:0000031!5.53e-11!33;CL:0000404!5.53e-11!33;CL:0000117!3.07e-09!23;CL:0000337!3.07e-09!23;CL:0000063!3.87e-08!66;CL:0000219!4.72e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.10e-19,70;CL:0000723,4.18e-18,91;CL:0000048,4.18e-18,91;CL:0000221,1.32e-15,44;CL:0000133,1.32e-15,44;CL:0002319,3.60e-15,43;CL:0000034,3.69e-15,97;CL:0000393,3.80e-13,39;CL:0000211,3.80e-13,39;CL:0000540,5.53e-11,33;CL:0000047,5.53e-11,33;CL:0000031,5.53e-11,33;CL:0000404,5.53e-11,33;CL:0000117,3.07e-09,23;CL:0000337,3.07e-09,23;CL:0000219,4.72e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.38e-13!73;UBERON:0005743!3.38e-13!73;UBERON:0000073!3.57e-13!75;UBERON:0001016!3.57e-13!75;UBERON:0002020!3.29e-09!34;UBERON:0004121!2.80e-08!102;UBERON:0000924!2.80e-08!102;UBERON:0006601!2.80e-08!102;UBERON:0002791!2.21e-07!29;UBERON:0003528!2.21e-07!29;UBERON:0001893!2.21e-07!29;UBERON:0001049!5.92e-07!52;UBERON:0005068!5.92e-07!52;UBERON:0006241!5.92e-07!52;UBERON:0007135!5.92e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.38e-13,73;UBERON:0001016,3.57e-13,75;UBERON:0002020,3.29e-09,34;UBERON:0004121,1.46e-08,95;UBERON:0000924,1.46e-08,95;UBERON:0006601,1.46e-08,95;UBERON:0010314,5.03e-08,92;UBERON:0000073,5.85e-08,54;UBERON:0003528,2.21e-07,29;UBERON:0002791,2.21e-07,29;UBERON:0001893,2.21e-07,29;UBERON:0001049,5.92e-07,52;UBERON:0005068,5.92e-07,52;UBERON:0006241,5.92e-07,52;UBERON:0007135,5.92e-07,52 | |||
|phase1_expression=51.5679287677437,48.8565570695106,49.5949170934594,43.2523822168767,53.0949473743128,57.5825902657782,59.571223351859,50.0998494953316,8.869689495555,18.4910975794375,26.7100030431788,44.114003924421,38.8625656943837,43.7976216119177,31.645427372488,25.5118836911181,29.3815988813822,29.180250295637,24.8177124826387,29.2828859740641,34.18740264073,31.0780677258771,37.6127696360067,58.5572267423868,61.7110966070687,75.7986192631827,87.4446852202922,60.9783588501066,94.4416394698178,94.0072384004542,111.530446859618,67.9482820601805,40.5942759805816,0,53.1486980342345,56.1873101311704,57.1674197534633,37.6678467663217,64.0694982509516,28.2702821745851,41.764435650202,38.250547157673,30.5871522409627,55.1428062733029,43.8962112180498,37.8106309453064,106.405222831333,103.125898967951,58.4365246073695,53.2737923463537,75.312694834445,93.4391668372315,16.6104779997159,26.1130371124084,24.1987535382574,64.0575995729508,75.0717612639543,71.162748734287,51.3883810583378,74.5877280773566,70.3552857891859,89.4549564662509,80.0365316500025,165.131598121137,185.906876162591,202.486832759639,91.078433597595,108.349562100678,36.2913643079672,59.807630680939,42.0649922702764,82.5531344926992,87.0222051349357,47.2814484969723,43.801380255334,61.5876587028714,68.271846219621,44.4351936536453,51.6117951740978,51.5675385025058,51.6905186353615,48.4449434617787,94.3638536624668,95.1068810953539,61.4248956062777,50.3814881159972,45.9860528981103,51.446247047783,27.4128819866126,47.0055103864206,19.4209207430124,67.9734862815295,67.997133370775,81.4951819373104,44.8345728038892,36.2901778548842,68.5368770242949,70.899014192472,110.409051956219,89.3949123511161,59.1542363062058,30.7983545794363,17.8363667794652,28.4426681261332,38.7518963410073,34.4569417046134,29.3204178108574,53.323871828801,21.4918443427153,34.2901341239745,27.4106816290495,36.8403228757691,28.8269371570073,36.7763242948399,22.5770317700553,35.5636453462982,12.3597483867187,32.8240540208199,32.7305904221453,23.6179600923217,22.0841518460394,21.819386391085,33.550517019262,31.034764483224,24.2958179903608,26.5675337416935,36.5436129743057,58.7904676373539,41.5519642528922,30.5572904385838,31.1100409916666,29.2774640422974,32.8527965163402,32.2201476236216,37.6096360652804,28.8789448260609,21.3862664085664,25.6278359456792,49.7863834114339,34.7229062212682,23.291559290324,43.6813998423599,25.0286360429435,29.2367346601287,22.3159717216355,32.5408849523518,31.5774811766286,31.8205146008989,28.4549750671352,19.0997140969497,19.0027214097065,26.9610750885917,19.7413546950174,19.1538691587192,19.1377386859387,26.4715574868596,62.4969736708779,48.8961023517959,40.6353804135697,25.8907215669377,32.3645962773913,36.012412292203,23.9112182941062,30.695220152595,35.3271688512096,29.7643449280522,34.8755421819505,28.1404475104878,33.4056495324365,36.7735119537173,34.1299688188053,46.4915960012557,48.3010253640311,44.1539117721623,34.0669716673886,18.6257348406505,28.0855965536228,39.4031344328681,26.6610313169042,24.384850545346,18.8146493530256,21.781820659321,19.5692678583486,27.5827157863211,26.0990983849481,36.0690710845584,29.9088898472321,25.068515477185,28.8546848936298,26.0657628509724,26.152704034838,27.4814957091027,27.6915135391499,25.3631697993598,14.6520056375005,23.2162513743658,23.856155921618,18.0950415317022,17.8959400061648,27.0126570802672,24.4918015432545,30.2323051608411,46.2466098255952,20.5219480030796,22.8008434331315,19.5630037774823,21.5031728671813,21.4647672179651,28.0088436959562,19.5633373466551,9.72811360650212,36.2421065408268,8.62609239164127,34.9812490808393,39.6287844855492,43.6961458848503,41.2614051100398,33.7710464954357,24.3874211019918,41.8776020012771,21.0224819610213,27.3289588098053,24.6424760702927,21.1057884376688,19.5195785526531,12.8788207586147,25.2216230569906,25.2469746199603,18.656207932926,24.415633892645,29.5291318990681,22.9992003144603,72.3798162908507,60.9174365876955,19.6705709207614,19.591508987636,37.7293886471311,26.1382061100613,56.2296862641997,69.4295049812026,58.3690205920075,60.9084441102756,44.5926433306894,36.5622260867405,36.9845798976774,41.3291734951695,49.791716306012,40.0390525338497,34.3900366813475,35.3453448063988,21.8587731220734,31.5176118491042,21.6639655940256,18.1467135269789,39.8235415019888,32.2898246086125,36.2788268357701,29.610997521676,45.476491503639,27.9765984628974,23.0001180919717,33.808636841408,28.8762876491624,36.3442271626188,59.0344208019993,51.5677716240934,32.6822021523636,30.790447079354,38.5488877672608,32.1505552547388,21.4581682707151,24.0797903762795,25.0114511315224,28.0107753185431,20.6511103096065,17.1583977399694,49.1778327662565,33.307023094179,14.5317984026315,20.8682720251419,25.1875645846618,25.9342621597197,23.3184669303881,29.8534736236921,26.3141156428693,21.0514605322487,21.1121761201471,23.3576886685817,19.0004976532225,24.7080427063044,25.6667429290722,23.7917468950219,20.868196044468,43.9148484286952,24.0415355121663,20.128627245558,25.381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| |||
|short_description=p1@2810428I15Rik | |||
}} |
Revision as of 15:58, 14 September 2013
Short description: | p1@2810428I15Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_2810428I15Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:247 |
Association with transcript: | 0bp_to_ENSMUST00000075175, ENSMUST00000128620, ENSMUST00000135773, ENSMUST00000136913, NM_025577, uc009mal.1_5end |
EntrezGene: | 2810428I15Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.10e-19 | 70 |
somatic stem cell | 4.18e-18 | 91 |
multi fate stem cell | 4.18e-18 | 91 |
ectodermal cell | 1.32e-15 | 44 |
neurectodermal cell | 1.32e-15 | 44 |
neural cell | 3.60e-15 | 43 |
stem cell | 3.69e-15 | 97 |
electrically responsive cell | 3.80e-13 | 39 |
electrically active cell | 3.80e-13 | 39 |
neuron | 5.53e-11 | 33 |
neuronal stem cell | 5.53e-11 | 33 |
neuroblast | 5.53e-11 | 33 |
electrically signaling cell | 5.53e-11 | 33 |
CNS neuron (sensu Vertebrata) | 3.07e-09 | 23 |
neuroblast (sensu Vertebrata) | 3.07e-09 | 23 |
motile cell | 4.72e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.38e-13 | 73 |
nervous system | 3.57e-13 | 75 |
gray matter | 3.29e-09 | 34 |
ectoderm-derived structure | 1.46e-08 | 95 |
ectoderm | 1.46e-08 | 95 |
presumptive ectoderm | 1.46e-08 | 95 |
structure with developmental contribution from neural crest | 5.03e-08 | 92 |
regional part of nervous system | 5.85e-08 | 54 |
brain grey matter | 2.21e-07 | 29 |
regional part of telencephalon | 2.21e-07 | 29 |
telencephalon | 2.21e-07 | 29 |
neural tube | 5.92e-07 | 52 |
neural rod | 5.92e-07 | 52 |
future spinal cord | 5.92e-07 | 52 |
neural keel | 5.92e-07 | 52 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.