FFCP PHASE1:Mm9::chr9:42072554..42072562,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=6|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:42072554..42072562,+|id=chr9:42072554..42072562,+|ontology_enrichment_celltype=CL:0000066!5.81e-10!25;CL:0000223!1.02e-09!20|ontology_enrichment_celltype_v019_2=CL:0000066,1.71e-12,25;CL:0000223,4.48e-11,20;CL:0000213,3.74e-10,1;CL:0002078,3.74e-10,1;CL:0000115,3.74e-10,1;CL:0002262,3.74e-10,1;CL:1000398,3.74e-10,1;CL:0000815,4.59e-10,1;CL:0000792,4.59e-10,1;CL:0000182,6.00e-08,5|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000490!2.34e-10!66;UBERON:0003929!3.43e-09!55;UBERON:0000344!6.45e-07!15|ontology_enrichment_uberon_v019_2=UBERON:0002394,3.74e-10,1;UBERON:0001281,3.74e-10,1;UBERON:0000353,3.74e-10,1;UBERON:0003497,3.74e-10,1;UBERON:0003909,3.74e-10,1;UBERON:0003928,3.74e-10,1;UBERON:0003835,3.74e-10,1;UBERON:0003513,3.74e-10,1;UBERON:0001280,3.74e-10,1;UBERON:0004647,3.74e-10,1;UBERON:0002294,3.74e-10,1;UBERON:0001173,3.74e-10,1;UBERON:0004912,3.74e-10,1;UBERON:0005171,3.74e-10,1;UBERON:0003929,1.53e-07,55|phase1_expression=0,0.348975407639361,0.454999239389536,0.30246421130683,1.50268718983904,0.33575854382378,0.467225281191051,1.42035655785734,0,0,0.171217968225505,0,0.342401459862411,0.0874204024189974,0,0,0,0,0,0,0,0,0.522399578277871,0.47997726838022,0.45881856213434,0,1.29228598847722,0.215471232685889,0.190023419456374,0,0.443461021310609,0.635030673459631,0.61506478758457,0,1.1554064790051,0.166234645358492,0.204169356262369,0.837063261473815,0.7813353445238,0,7.64700934440319,0,0.485510353031154,0.377690453926732,0.202753862439029,0.550640256485045,0,0,0,0.194429899074283,0,0,0.503347818173209,0,0.336093799142464,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0.384218305321555,0.103689612308478,0,0,0,0,0,0,0,0,0.255374676170375,0,0,0.182975287204819,0,0,0,0,0.294628585473668,0,0,0.075726193333184,0,1.44932244350839,0,0.679971333707751,0.539703191637817,1.29955283489534,0.896053774194671,0.140444420131752,0.340860645156116,0,0.35333957451034,0.422530259330042,2.56652954828636,0,0,0,0.253359865475099,0.505524445014783,0.22836775943812,0,0.29688427812965,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0.299581278809645,0,0.125654352112864,0,0,0,0,0,0,0,0.210441855886474,0.260240885925407,0.229902104433473,0,0.150704817835715,0.0680364991513279,0.12811372028485,0,0,0,0.189106080167819,0.527853372491847,0,0,0.348252166522167,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0.201683524623343,0,0,0,0.164698954724011,0,0,0,0,0,0.199141273254367,0,0,0,0.203651327845314,0,0,0.0632365371242573,0,0,0,0.889357881261447,0,0,0,0.202860121388503,0.241177159752417,0,0,0,0.274561413188081,0,0.744281895337007,0.624075346229121,1.26289438973556,3.04975602987251,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0.491589944147214,0.172684981865896,0.144649058581512,0,0,0,0,0.160550589987792,0.35163505977661,0.163934945376675,0,0.315508219416257,0,0,0.238968797952552,0,0,0,0.292255857911312,0.395287777946524,0,0.283880170416537,0,0,0,0,0,0,0,0,0,0,0.727067458955011,0,0,0,0,0,0.36012218806262,0.258717367565509,0,0.177340233642274,0,0,0.304464949114599,0,0,0,0.16488625294148,0,0.120625849856312,0.119372344003136,0.164140899745061,0,0.370850604021019,0,0,0,0,0,0,0,0.139951452323658,0.138199973804424,0,0,0,0.216010681643603,0,0,0,0.165306911450672,0,0,0,0,0,0,0.194451188344048,0.258319646955462,0.337912250981556,0.234714477291508,0,0,0.241584120826006,0,0.316011120628178,0.608175645870493,0.205421914329655,0,0.358053391334963,0,0.120195449519969,0.147689527174577,0.201932899896295,0.0762068066549998,0,0,0.192423683280659,0,0,0,0.0897138566094757,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0.222246727801615,0.206035057238894,0,0,0,0.188626341386076,0.187283014939765,0.0640251524048693,0,0,0.115884325944855,0,0,0.147198920134397,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0,0.135804113845862,0,0,0.0985044823755635,0,0,0,0.249810577937946,0.233931608445408,0,0.191288332068843,0,0|short_description=p@chr9:42072554..42072562,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:42072554..42072562,+ | |||
|id=chr9:42072554..42072562,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.81e-10!25;CL:0000223!1.02e-09!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.71e-12,25;CL:0000223,4.48e-11,20;CL:0000213,3.74e-10,1;CL:0002078,3.74e-10,1;CL:0000115,3.74e-10,1;CL:0002262,3.74e-10,1;CL:1000398,3.74e-10,1;CL:0000815,4.59e-10,1;CL:0000792,4.59e-10,1;CL:0000182,6.00e-08,5 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000490!2.34e-10!66;UBERON:0003929!3.43e-09!55;UBERON:0000344!6.45e-07!15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002394,3.74e-10,1;UBERON:0001281,3.74e-10,1;UBERON:0000353,3.74e-10,1;UBERON:0003497,3.74e-10,1;UBERON:0003909,3.74e-10,1;UBERON:0003928,3.74e-10,1;UBERON:0003835,3.74e-10,1;UBERON:0003513,3.74e-10,1;UBERON:0001280,3.74e-10,1;UBERON:0004647,3.74e-10,1;UBERON:0002294,3.74e-10,1;UBERON:0001173,3.74e-10,1;UBERON:0004912,3.74e-10,1;UBERON:0005171,3.74e-10,1;UBERON:0003929,1.53e-07,55 | |||
|phase1_expression=0,0.348975407639361,0.454999239389536,0.30246421130683,1.50268718983904,0.33575854382378,0.467225281191051,1.42035655785734,0,0,0.171217968225505,0,0.342401459862411,0.0874204024189974,0,0,0,0,0,0,0,0,0.522399578277871,0.47997726838022,0.45881856213434,0,1.29228598847722,0.215471232685889,0.190023419456374,0,0.443461021310609,0.635030673459631,0.61506478758457,0,1.1554064790051,0.166234645358492,0.204169356262369,0.837063261473815,0.7813353445238,0,7.64700934440319,0,0.485510353031154,0.377690453926732,0.202753862439029,0.550640256485045,0,0,0,0.194429899074283,0,0,0.503347818173209,0,0.336093799142464,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0.384218305321555,0.103689612308478,0,0,0,0,0,0,0,0,0.255374676170375,0,0,0.182975287204819,0,0,0,0,0.294628585473668,0,0,0.075726193333184,0,1.44932244350839,0,0.679971333707751,0.539703191637817,1.29955283489534,0.896053774194671,0.140444420131752,0.340860645156116,0,0.35333957451034,0.422530259330042,2.56652954828636,0,0,0,0.253359865475099,0.505524445014783,0.22836775943812,0,0.29688427812965,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0.299581278809645,0,0.125654352112864,0,0,0,0,0,0,0,0.210441855886474,0.260240885925407,0.229902104433473,0,0.150704817835715,0.0680364991513279,0.12811372028485,0,0,0,0.189106080167819,0.527853372491847,0,0,0.348252166522167,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0.201683524623343,0,0,0,0.164698954724011,0,0,0,0,0,0.199141273254367,0,0,0,0.203651327845314,0,0,0.0632365371242573,0,0,0,0.889357881261447,0,0,0,0.202860121388503,0.241177159752417,0,0,0,0.274561413188081,0,0.744281895337007,0.624075346229121,1.26289438973556,3.04975602987251,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0.491589944147214,0.172684981865896,0.144649058581512,0,0,0,0,0.160550589987792,0.35163505977661,0.163934945376675,0,0.315508219416257,0,0,0.238968797952552,0,0,0,0.292255857911312,0.395287777946524,0,0.283880170416537,0,0,0,0,0,0,0,0,0,0,0.727067458955011,0,0,0,0,0,0.36012218806262,0.258717367565509,0,0.177340233642274,0,0,0.304464949114599,0,0,0,0.16488625294148,0,0.120625849856312,0.119372344003136,0.164140899745061,0,0.370850604021019,0,0,0,0,0,0,0,0.139951452323658,0.138199973804424,0,0,0,0.216010681643603,0,0,0,0.165306911450672,0,0,0,0,0,0,0.194451188344048,0.258319646955462,0.337912250981556,0.234714477291508,0,0,0.241584120826006,0,0.316011120628178,0.608175645870493,0.205421914329655,0,0.358053391334963,0,0.120195449519969,0.147689527174577,0.201932899896295,0.0762068066549998,0,0,0.192423683280659,0,0,0,0.0897138566094757,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0.222246727801615,0.206035057238894,0,0,0,0.188626341386076,0.187283014939765,0.0640251524048693,0,0,0.115884325944855,0,0,0.147198920134397,0,0,0,0,0.0941093804153306,0.0846146078916765,0,0,0.135804113845862,0,0,0.0985044823755635,0,0,0,0.249810577937946,0.233931608445408,0,0.191288332068843,0,0 | |||
|short_description=p@chr9:42072554..42072562,+ | |||
}} |
Revision as of 17:50, 14 September 2013
Short description: | p@chr9:42072554..42072562, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:42072554..42072562, + |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.71e-12 | 25 |
endodermal cell | 4.48e-11 | 20 |
lining cell | 3.74e-10 | 1 |
meso-epithelial cell | 3.74e-10 | 1 |
endothelial cell | 3.74e-10 | 1 |
endothelial cell of sinusoid | 3.74e-10 | 1 |
endothelial cell of hepatic sinusoid | 3.74e-10 | 1 |
regulatory T cell | 4.59e-10 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.59e-10 | 1 |
hepatocyte | 6.00e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
bile duct | 3.74e-10 | 1 |
hepatic sinusoid | 3.74e-10 | 1 |
parenchyma | 3.74e-10 | 1 |
abdomen blood vessel | 3.74e-10 | 1 |
sinusoid | 3.74e-10 | 1 |
digestive system duct | 3.74e-10 | 1 |
abdominal segment blood vessel | 3.74e-10 | 1 |
trunk blood vessel | 3.74e-10 | 1 |
liver parenchyma | 3.74e-10 | 1 |
liver lobule | 3.74e-10 | 1 |
biliary system | 3.74e-10 | 1 |
biliary tree | 3.74e-10 | 1 |
biliary bud | 3.74e-10 | 1 |
hepatic duct | 3.74e-10 | 1 |
gut epithelium | 1.53e-07 | 55 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.