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MCL coexpression mm9:77: Difference between revisions

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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0048563;post-embryonic organ morphogenesis;0.0042978561820403;17921,22295!GO:0048569;post-embryonic organ development;0.0042978561820403;17921,22295!GO:0060122;inner ear receptor stereocilium organization and biogenesis;0.0042978561820403;17921,22295!GO:0060088;auditory receptor cell stereocilium organization and biogenesis;0.0042978561820403;17921,22295!GO:0002093;auditory receptor cell morphogenesis;0.0042978561820403;17921,22295!GO:0032420;stereocilium;0.0042978561820403;17921,22295!GO:0060119;inner ear receptor cell development;0.0042978561820403;17921,22295!GO:0009886;post-embryonic morphogenesis;0.0042978561820403;17921,22295!GO:0060117;auditory receptor cell development;0.0042978561820403;17921,22295!GO:0032421;stereocilium bundle;0.00620112189091778;17921,22295!GO:0005902;microvillus;0.0168900456627893;17921,22295!GO:0007530;sex determination;0.026389433366329;242523,50796!GO:0042491;auditory receptor cell differentiation;0.026389433366329;17921,22295!GO:0001890;placenta development;0.0315729769951657;12705,56096!GO:0060113;inner ear receptor cell differentiation;0.0315729769951657;17921,22295!GO:0009791;post-embryonic development;0.0381999209935209;17921,22295!GO:0042490;mechanoreceptor differentiation;0.0381999209935209;17921,22295!GO:0032426;stereocilium bundle tip;0.0381999209935209;22295!GO:0001845;phagolysosome formation;0.0381999209935209;17921!}}
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organ morphogenesis;0.0042978561820403;17921,22295!GO:0048569;post-embryonic organ development;0.0042978561820403;17921,22295!GO:0060122;inner ear receptor stereocilium organization and biogenesis;0.0042978561820403;17921,22295!GO:0060088;auditory receptor cell stereocilium organization and biogenesis;0.0042978561820403;17921,22295!GO:0002093;auditory receptor cell morphogenesis;0.0042978561820403;17921,22295!GO:0032420;stereocilium;0.0042978561820403;17921,22295!GO:0060119;inner ear receptor cell development;0.0042978561820403;17921,22295!GO:0009886;post-embryonic morphogenesis;0.0042978561820403;17921,22295!GO:0060117;auditory receptor cell development;0.0042978561820403;17921,22295!GO:0032421;stereocilium bundle;0.00620112189091778;17921,22295!GO:0005902;microvillus;0.0168900456627893;17921,22295!GO:0007530;sex determination;0.026389433366329;242523,50796!GO:0042491;auditory receptor cell differentiation;0.026389433366329;17921,22295!GO:0001890;placenta development;0.0315729769951657;12705,56096!GO:0060113;inner ear receptor cell differentiation;0.0315729769951657;17921,22295!GO:0009791;post-embryonic development;0.0381999209935209;17921,22295!GO:0042490;mechanoreceptor differentiation;0.0381999209935209;17921,22295!GO:0032426;stereocilium bundle tip;0.0381999209935209;22295!GO:0001845;phagolysosome formation;0.0381999209935209;17921!|ontology_enrichment_celltype=|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0000991!2.81e-54!18;UBERON:0005564!2.81e-54!18;UBERON:0000473!1.20e-50!14;UBERON:0004176!3.96e-49!17;UBERON:0009196!3.96e-49!17;UBERON:0009117!3.96e-49!17;UBERON:0003135!3.38e-47!15;UBERON:0003101!3.51e-44!16;UBERON:0000079!3.51e-44!16;UBERON:0003133!2.15e-40!24;UBERON:0005156!3.48e-37!26;UBERON:0000990!3.48e-37!26;UBERON:0002323!1.00e-25!37;UBERON:0004458!1.00e-25!37;UBERON:0003886!5.19e-25!38;UBERON:0002553!2.47e-24!39;UBERON:0000464!3.48e-16!57;UBERON:0000466!3.07e-11!79;UBERON:0000926!4.43e-08!120;UBERON:0004120!4.43e-08!120;UBERON:0006603!4.43e-08!120|tfbs_overrepresentation_for_novel_motifs=0.0405348,0.259095,0.0492444,0.318038,0.232473,0.250257,0.248206,0.430565,0.413822,0.00868073,0.0917823,0.222712,0.211398,0.0892125,0.221773,0,0.226584,0.14428,0.589448,0.859113,0.369934,0.351707,0.0883497,0.305012,0.333154,0.510172,0.416661,0.6042,0.011883,0.0794417,0.390284,0.655258,0.265762,0.090844,0.30398,1.08183,0.00378843,0.215356,0.451604,0.352091,0.293419,0.109508,0.470701,1.34062,0.0252534,0.188581,0.126998,0.504247,0.741201,0.182757,0.0316237,0.0743202,1.37775,0.0475615,0.432097,0.441766,0.393083,0.454429,0.275982,0.043133,0.0704588,0.081599,0.41027,0.337703,0.050376,0.244015,0.334032,0.821918,0.351894,0.207433,0.16498,1.63449,6.47869e-08,0.225721,0.000519066,0.00459998,2.98237,0.798139,0.165364,2.18139,0.978739,0.121336,0.440103,0.381334,0.129306,1.25326e-09,0.000247659,0.523686,0.411914,0.426545,0.418071,0.0328351,1.02066,0.129068,0.000548714,2.1753,0.258914,0.428935,0.127265,0.375321,2.09583,0.0178485,0.165143,0.362579,0.0931759,0.000619732,0.052559,0.227633,0.145,0.025098,0.377928,0.166598,0.204326,0.568126,0.137758,0.374362,0.0139099,0.330217,1.59544,0.153147,0.23091,0.982057,0.720993,0.220415,0.16622,0.850479,0.406063,0.0187838,0.680108,0.268181,0.349693,0.197222,0.299213,0.683493,0.454835,0.188436,2.55657,0.414127,0.124269,0.742382,0.401525,0.339458,0.0249916,0.0866571,1.82298,0.953434,0.860746,0.70655,0.773747,0.0285132,0.117367,4.70345e-07,1.55693,0.349168,0.0190138,0.547503,0.266867,0.590769,0.283625,0.0464306,0.404272,0.128697,0.06416,0.262001,0.541238,0.186684,0.489719,0.495206,0.0633222|tfbs_overrepresentation_jaspar=MA0003.1;1.3311e-10,MA0004.1;0.0400962,MA0006.1;0.0368764,MA0007.1;0.0629297,MA0009.1;0.450847,MA0014.1;1.9356e-07,MA0017.1;0.816605,MA0019.1;0.465358,MA0024.1;1.26386,MA0025.1;0.0872833,MA0027.1;1.21349,MA0028.1;0.00639685,MA0029.1;1.16522,MA0030.1;0.566938,MA0031.1;0.731575,MA0038.1;0.95011,MA0040.1;0.25387,MA0041.1;0.127212,MA0042.1;0.238137,MA0043.1;0.0426224,MA0046.1;0.0286672,MA0048.1;0.0355868,MA0050.1;0.209946,MA0051.1;0.229367,MA0052.1;0.0256938,MA0055.1;0.273064,MA0056.1;0,MA0057.1;0.108175,MA0058.1;0.0550372,MA0059.1;0.11339,MA0060.1;0.364993,MA0061.1;0.00892909,MA0063.1;0,MA0066.1;0.19349,MA0067.1;0.137119,MA0068.1;0.452608,MA0069.1;0.108997,MA0070.1;0.102832,MA0071.1;0.8109,MA0072.1;0.0976127,MA0073.1;9.89722e-11,MA0074.1;0.0316398,MA0076.1;0.0161637,MA0077.1;1.80973,MA0078.1;0.665181,MA0081.1;0.0988955,MA0083.1;0.0424174,MA0084.1;0.343509,MA0087.1;0.308675,MA0088.1;0.00546985,MA0089.1;0,MA0090.1;0.951187,MA0091.1;0.093031,MA0092.1;0.590601,MA0093.1;0.0169678,MA0095.1;0,MA0098.1;0,MA0100.1;0.121993,MA0101.1;0.0792944,MA0103.1;0.0805492,MA0105.1;0.000306883,MA0106.1;0.484549,MA0107.1;0.0423238,MA0108.2;0.183001,MA0109.1;0,MA0111.1;0.058288,MA0113.1;1.06921,MA0114.1;0.279229,MA0115.1;1.48193,MA0116.1;0.0969737,MA0117.1;0.14133,MA0119.1;0.199399,MA0122.1;0.359364,MA0124.1;0.360009,MA0125.1;0.0810082,MA0130.1;0,MA0131.1;0.149579,MA0132.1;0,MA0133.1;0,MA0135.1;0.195303,MA0136.1;0.089696,MA0139.1;0.000674929,MA0140.1;4.91438,MA0141.1;7.18068,MA0142.1;0.122383,MA0143.1;0.033086,MA0144.1;0.0303037,MA0145.1;0.985286,MA0146.1;0.00315873,MA0147.1;0.06734,MA0148.1;0.886283,MA0149.1;4.87651e-05,MA0062.2;2.43934e-05,MA0035.2;6.01995,MA0039.2;8.99712e-08,MA0138.2;0.431992,MA0002.2;0.20571,MA0137.2;0.0666358,MA0104.2;0.00672603,MA0047.2;0.507243,MA0112.2;0.106106,MA0065.2;0.107976,MA0150.1;0.0314331,MA0151.1;0,MA0152.1;0.507614,MA0153.1;0.461096,MA0154.1;0.437503,MA0155.1;0.0250092,MA0156.1;0.0558147,MA0157.1;0.0964834,MA0158.1;0,MA0159.1;0.00941197,MA0160.1;0.705469,MA0161.1;0,MA0162.1;0.00882391,MA0163.1;0.0058813,MA0164.1;3.11964,MA0080.2;0.0431237,MA0018.2;0.0167776,MA0099.2;0.133716,MA0079.2;5.66683e-05,MA0102.2;0.382965,MA0258.1;0.0777616,MA0259.1;0.00471085,MA0442.1;0}}

Latest revision as of 14:39, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:127031444..127031494,-p@chr10:127031444..127031494
-
Mm9::chr10:128142003..128142031,-p2@Cdk2
Mm9::chr10:59917695..59917696,-p@chr10:59917695..59917696
-
Mm9::chr10:60149960..60149980,-p2@Cdh23
Mm9::chr10:60149981..60150019,-p1@Cdh23
Mm9::chr11:100940503..100940515,+p@chr11:100940503..100940515
+
Mm9::chr11:101501360..101501365,+p@chr11:101501360..101501365
+
Mm9::chr11:116488182..116488189,-p6@Rhbdf2
Mm9::chr11:116488239..116488251,-p5@Rhbdf2
Mm9::chr11:116488265..116488274,-p7@Rhbdf2
Mm9::chr11:119251253..119251273,+p@chr11:119251253..119251273
+
Mm9::chr11:69431091..69431096,-p@chr11:69431091..69431096
-
Mm9::chr11:69431224..69431241,-p@chr11:69431224..69431241
-
Mm9::chr11:69431363..69431375,-p2@Shbg
Mm9::chr11:69431381..69431428,-p1@Shbg
Mm9::chr11:69431571..69431587,-p3@Shbg
Mm9::chr11:69790154..69790170,+p@chr11:69790154..69790170
+
Mm9::chr11:78218202..78218234,+p@chr11:78218202..78218234
+
Mm9::chr12:113643935..113643944,-p1@uc007peo.1
Mm9::chr12:113959316..113959338,+p@chr12:113959316..113959338
+
Mm9::chr12:77084655..77084667,+p@chr12:77084655..77084667
+
Mm9::chr12:98362518..98362551,+p@chr12:98362518..98362551
+
Mm9::chr13:23585701..23585712,+p@chr13:23585701..23585712
+
Mm9::chr13:23585714..23585726,+p@chr13:23585714..23585726
+
Mm9::chr13:28646737..28646783,-p@chr13:28646737..28646783
-
Mm9::chr13:61814335..61814358,+p@chr13:61814335..61814358
+
Mm9::chr14:26407154..26407166,-p@chr14:26407154..26407166
-
Mm9::chr14:27258701..27258722,-p3@Slmap
Mm9::chr14:27258741..27258755,-p12@Slmap
Mm9::chr14:59989377..59989392,-p@chr14:59989377..59989392
-
Mm9::chr14:67443254..67443273,-p@chr14:67443254..67443273
-
Mm9::chr14:67443459..67443465,-p@chr14:67443459..67443465
-
Mm9::chr15:25585018..25585027,+p@chr15:25585018..25585027
+
Mm9::chr15:35984598..35984624,-p@chr15:35984598..35984624
-
Mm9::chr15:51871501..51871511,+p4@Aard
Mm9::chr15:51871693..51871707,+p1@Aard
Mm9::chr15:51871941..51871952,+p@chr15:51871941..51871952
+
Mm9::chr15:51876435..51876439,+p@chr15:51876435..51876439
+
Mm9::chr15:76701495..76701535,-p3@Zfp251
Mm9::chr15:81602721..81602750,+p@chr15:81602721..81602750
+
Mm9::chr16:8425197..8425237,-p1@Cldn26
Mm9::chr16:8425243..8425254,-p2@Cldn26
Mm9::chr17:13102747..13102763,-p2@Pnldc1
Mm9::chr17:24162200..24162206,-p@chr17:24162200..24162206
-
Mm9::chr17:29080780..29080785,-p@chr17:29080780..29080785
-
Mm9::chr17:31696505..31696520,-p@chr17:31696505..31696520
-
Mm9::chr17:34818349..34818361,+p@chr17:34818349..34818361
+
Mm9::chr17:66798772..66798782,-p6@1110012J17Rik
Mm9::chr18:11054060..11054072,+p@chr18:11054060..11054072
+
Mm9::chr18:12649322..12649329,+p@chr18:12649322..12649329
+
Mm9::chr18:23511089..23511115,+p@chr18:23511089..23511115
+
Mm9::chr18:23511116..23511121,+p@chr18:23511116..23511121
+
Mm9::chr18:74019020..74019053,+p1@Mro
Mm9::chr18:81057653..81057661,-p@chr18:81057653..81057661
-
Mm9::chr18:81057675..81057691,-p@chr18:81057675..81057691
-
Mm9::chr18:81057693..81057702,-p@chr18:81057693..81057702
-
Mm9::chr19:20566707..20566731,+p4@E030003E18Rik
Mm9::chr19:25580110..25580163,+p1@Dmrt1
Mm9::chr19:25580226..25580261,+p2@Dmrt1
Mm9::chr19:25580272..25580305,+p3@Dmrt1
Mm9::chr19:25580323..25580335,+p5@Dmrt1
Mm9::chr19:25673985..25673986,+p@chr19:25673985..25673986
+
Mm9::chr19:25677680..25677685,+p@chr19:25677680..25677685
+
Mm9::chr19:37611485..37611488,+p@chr19:37611485..37611488
+
Mm9::chr19:45151126..45151134,+p@chr19:45151126..45151134
+
Mm9::chr1:129216704..129216743,+p@chr1:129216704..129216743
+
Mm9::chr1:135261699..135261712,+p10@Etnk2
Mm9::chr1:135261724..135261733,+p11@Etnk2
Mm9::chr1:135261737..135261767,+p6@Etnk2
Mm9::chr1:182312504..182312531,+p@chr1:182312504..182312531
+
Mm9::chr1:63154602..63154606,-p@chr1:63154602..63154606
-
Mm9::chr1:94965256..94965296,-p5@Kif1a
Mm9::chr2:148661069..148661070,+p@chr2:148661069..148661070
+
Mm9::chr2:157249626..157249648,+p8@Src
Mm9::chr2:157249649..157249680,+p4@Src
Mm9::chr2:180570900..180570903,+p1@ENSMUST00000139338
Mm9::chr2:31332380..31332388,+p@chr2:31332380..31332388
+
Mm9::chr2:69659733..69659753,+p10@Klhl23
Mm9::chr3:107746250..107746266,-p4@Gstm6
Mm9::chr3:107746267..107746278,-p6@Gstm6
Mm9::chr3:107746281..107746297,-p5@Gstm6
Mm9::chr3:107746308..107746339,-p3@Gstm6
Mm9::chr3:107787547..107787558,-p@chr3:107787547..107787558
-
Mm9::chr3:156433846..156433880,+p@chr3:156433846..156433880
+
Mm9::chr3:54438548..54438551,-p@chr3:54438548..54438551
-
Mm9::chr3:89763040..89763052,-p@chr3:89763040..89763052
-
Mm9::chr3:89763068..89763078,-p@chr3:89763068..89763078
-
Mm9::chr4:131477065..131477075,+p@chr4:131477065..131477075
+
Mm9::chr4:131477113..131477122,+p@chr4:131477113..131477122
+
Mm9::chr4:14548939..14548944,-p7@Slc26a7
Mm9::chr4:14548955..14548966,-p3@Slc26a7
Mm9::chr4:151370222..151370352,-p1@Phf13
Mm9::chr4:89354863..89354871,+p3@Dmrta1
Mm9::chr4:97444733..97444762,-p2@E130114P18Rik
Mm9::chr4:98787937..98787946,-p8@Dock7
Mm9::chr4:98787958..98787969,-p7@Dock7
Mm9::chr5:36664284..36664297,-p@chr5:36664284..36664297
-
Mm9::chr5:37482722..37482762,+p@chr5:37482722..37482762
+
Mm9::chr6:145902097..145902104,+p3@Sspn
Mm9::chr6:25639294..25639305,-p@chr6:25639294..25639305
-
Mm9::chr6:25639315..25639339,-p@chr6:25639315..25639339
-
Mm9::chr6:43628976..43628977,-p@chr6:43628976..43628977
-
Mm9::chr6:72577523..72577546,+p@chr6:72577523..72577546
+
Mm9::chr6:82687274..82687298,-p@chr6:82687274..82687298
-
Mm9::chr6:83138885..83138888,+p22@Dctn1
Mm9::chr6:83138889..83138897,+p15@Dctn1
Mm9::chr6:83139055..83139074,+p7@Dctn1
Mm9::chr6:89046167..89046172,+p3@4933427D06Rik
Mm9::chr7:104599942..104599951,+p7@Kctd14
Mm9::chr7:105246182..105246199,-p@chr7:105246182..105246199
-
Mm9::chr7:137497839..137497868,-p1@ENSMUST00000121836
Mm9::chr7:147143936..147143939,-p1@Mir202
Mm9::chr7:149469113..149469118,+p@chr7:149469113..149469118
+
Mm9::chr7:149469129..149469146,+p@chr7:149469129..149469146
+
Mm9::chr7:149469159..149469170,+p@chr7:149469159..149469170
+
Mm9::chr7:20074394..20074416,+p1@Exoc3l2
Mm9::chr7:20074432..20074443,+p2@Exoc3l2
Mm9::chr7:27959600..27959622,-p3@Rab4b
Mm9::chr7:29680133..29680138,+p@chr7:29680133..29680138
+
Mm9::chr7:29680196..29680209,+p@chr7:29680196..29680209
+
Mm9::chr7:29680238..29680247,+p@chr7:29680238..29680247
+
Mm9::chr7:29680256..29680276,+p@chr7:29680256..29680276
+
Mm9::chr7:31751373..31751390,-p@chr7:31751373..31751390
-
Mm9::chr7:52553576..52553586,-p@chr7:52553576..52553586
-
Mm9::chr7:5996770..5996799,+p1@Nlrp4c
Mm9::chr8:26314291..26314315,-p@chr8:26314291..26314315
-
Mm9::chr8:26314330..26314348,-p@chr8:26314330..26314348
-
Mm9::chr8:26314366..26314395,-p@chr8:26314366..26314395
-
Mm9::chr8:3360804..3360809,+p@chr8:3360804..3360809
+
Mm9::chr8:3360842..3360856,+p@chr8:3360842..3360856
+
Mm9::chr8:72346053..72346064,+p4@Lpar2
Mm9::chr8:97519583..97519594,+p@chr8:97519583..97519594
+
Mm9::chr9:110283445..110283453,+p@chr9:110283445..110283453
+
Mm9::chr9:120652312..120652318,-p@chr9:120652312..120652318
-
Mm9::chr9:56773731..56773737,-p@chr9:56773731..56773737
-
Mm9::chr9:57982851..57982885,+p4@Stra6
Mm9::chr9:57982887..57982909,+p6@Stra6
Mm9::chr9:58589350..58589387,-p1@2410076I21Rik
Mm9::chr9:74852168..74852181,+p@chr9:74852168..74852181
+
Mm9::chrX:137135036..137135064,-p4@Tsc22d3
Mm9::chrX:147956895..147956927,+p3@Phf8
Mm9::chrX:16828421..16828449,-p@chrX:16828421..16828449
-
Mm9::chrX:16828671..16828684,+p@chrX:16828671..16828684
+
Mm9::chrX:35231684..35231689,-p@chrX:35231684..35231689
-
Mm9::chrX:35231698..35231710,-p@chrX:35231698..35231710
-
Mm9::chrX:35231739..35231742,-p@chrX:35231739..35231742
-
Mm9::chrX:35231763..35231779,-p@chrX:35231763..35231779
-
Mm9::chrX:35231992..35231997,-p@chrX:35231992..35231997
-
Mm9::chrX:35232004..35232025,-p@chrX:35232004..35232025
-
Mm9::chrX:50141463..50141473,+p@chrX:50141463..50141473
+
Mm9::chrX:50141493..50141496,+p@chrX:50141493..50141496
+
Mm9::chrX:50141513..50141525,+p@chrX:50141513..50141525
+
Mm9::chrX:50562951..50562977,-p3@Plac1
Mm9::chrX:50562997..50563011,-p6@Plac1
Mm9::chrX:50788121..50788126,+p5@Etd
Mm9::chrX:66668487..66668514,+p@chrX:66668487..66668514
+
Mm9::chrX:70647033..70647048,-p@chrX:70647033..70647048
-
Mm9::chrX:70647050..70647062,-p@chrX:70647050..70647062
-
Mm9::chrX:71422564..71422575,+p2@Tktl1
Mm9::chrX:83600287..83600330,-p1@Gm41
Mm9::chrX:91213988..91214014,+p1@AU015836
Mm9::chrX:93160409..93160432,-p@chrX:93160409..93160432
-
Mm9::chrX:98254994..98255003,-p3@Tex11
Mm9::chrX:99446279..99446298,-p4@Cited1
Mm9::chrX:9993766..9993788,+p@chrX:9993766..9993788
+
Mm9::chrX:9993801..9993808,+p@chrX:9993801..9993808
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0048563post-embryonic organ morphogenesis0.0042978561820403
GO:0048569post-embryonic organ development0.0042978561820403
GO:0060122inner ear receptor stereocilium organization and biogenesis0.0042978561820403
GO:0060088auditory receptor cell stereocilium organization and biogenesis0.0042978561820403
GO:0002093auditory receptor cell morphogenesis0.0042978561820403
GO:0032420stereocilium0.0042978561820403
GO:0060119inner ear receptor cell development0.0042978561820403
GO:0009886post-embryonic morphogenesis0.0042978561820403
GO:0060117auditory receptor cell development0.0042978561820403
GO:0032421stereocilium bundle0.00620112189091778
GO:0005902microvillus0.0168900456627893
GO:0007530sex determination0.026389433366329
GO:0042491auditory receptor cell differentiation0.026389433366329
GO:0001890placenta development0.0315729769951657
GO:0060113inner ear receptor cell differentiation0.0315729769951657
GO:0009791post-embryonic development0.0381999209935209
GO:0042490mechanoreceptor differentiation0.0381999209935209
GO:0032426stereocilium bundle tip0.0381999209935209
GO:0001845phagolysosome formation0.0381999209935209



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.3311e-10
MA0004.10.0400962
MA0006.10.0368764
MA0007.10.0629297
MA0009.10.450847
MA0014.11.9356e-07
MA0017.10.816605
MA0019.10.465358
MA0024.11.26386
MA0025.10.0872833
MA0027.11.21349
MA0028.10.00639685
MA0029.11.16522
MA0030.10.566938
MA0031.10.731575
MA0038.10.95011
MA0040.10.25387
MA0041.10.127212
MA0042.10.238137
MA0043.10.0426224
MA0046.10.0286672
MA0048.10.0355868
MA0050.10.209946
MA0051.10.229367
MA0052.10.0256938
MA0055.10.273064
MA0056.10
MA0057.10.108175
MA0058.10.0550372
MA0059.10.11339
MA0060.10.364993
MA0061.10.00892909
MA0063.10
MA0066.10.19349
MA0067.10.137119
MA0068.10.452608
MA0069.10.108997
MA0070.10.102832
MA0071.10.8109
MA0072.10.0976127
MA0073.19.89722e-11
MA0074.10.0316398
MA0076.10.0161637
MA0077.11.80973
MA0078.10.665181
MA0081.10.0988955
MA0083.10.0424174
MA0084.10.343509
MA0087.10.308675
MA0088.10.00546985
MA0089.10
MA0090.10.951187
MA0091.10.093031
MA0092.10.590601
MA0093.10.0169678
MA0095.10
MA0098.10
MA0100.10.121993
MA0101.10.0792944
MA0103.10.0805492
MA0105.10.000306883
MA0106.10.484549
MA0107.10.0423238
MA0108.20.183001
MA0109.10
MA0111.10.058288
MA0113.11.06921
MA0114.10.279229
MA0115.11.48193
MA0116.10.0969737
MA0117.10.14133
MA0119.10.199399
MA0122.10.359364
MA0124.10.360009
MA0125.10.0810082
MA0130.10
MA0131.10.149579
MA0132.10
MA0133.10
MA0135.10.195303
MA0136.10.089696
MA0139.10.000674929
MA0140.14.91438
MA0141.17.18068
MA0142.10.122383
MA0143.10.033086
MA0144.10.0303037
MA0145.10.985286
MA0146.10.00315873
MA0147.10.06734
MA0148.10.886283
MA0149.14.87651e-05
MA0062.22.43934e-05
MA0035.26.01995
MA0039.28.99712e-08
MA0138.20.431992
MA0002.20.20571
MA0137.20.0666358
MA0104.20.00672603
MA0047.20.507243
MA0112.20.106106
MA0065.20.107976
MA0150.10.0314331
MA0151.10
MA0152.10.507614
MA0153.10.461096
MA0154.10.437503
MA0155.10.0250092
MA0156.10.0558147
MA0157.10.0964834
MA0158.10
MA0159.10.00941197
MA0160.10.705469
MA0161.10
MA0162.10.00882391
MA0163.10.0058813
MA0164.13.11964
MA0080.20.0431237
MA0018.20.0167776
MA0099.20.133716
MA0079.25.66683e-05
MA0102.20.382965
MA0258.10.0777616
MA0259.10.00471085
MA0442.10
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