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MCL coexpression mm9:129: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002370!6.28e-49!23;UBERON:0000974!6.28e-49!23;UBERON:0004807!6.28e-49!23;UBERON:0005058!6.28e-49!23;UBERON:0003351!6.28e-49!23;UBERON:0009113!6.28e-49!23;UBERON:0003295!6.28e-49!23;UBERON:0009722!6.28e-49!23;UBERON:0005562!6.28e-49!23;UBERON:0007690!6.28e-49!23;UBERON:0006562!7.78e-47!24;UBERON:0003408!7.78e-47!24;UBERON:0001557!7.78e-47!24;UBERON:0001042!7.78e-47!24;UBERON:0008814!7.78e-47!24;UBERON:0009145!7.78e-47!24;UBERON:0000072!1.75e-41!27;UBERON:0004177!1.57e-38!29;UBERON:0005057!1.57e-38!29;UBERON:0000077!1.09e-31!35;UBERON:0000063!1.09e-31!35;UBERON:0007811!9.06e-31!36;UBERON:0000065!7.65e-27!41;UBERON:0001004!3.61e-26!42;UBERON:0000153!1.58e-25!43;UBERON:0002390!2.51e-24!45;UBERON:0003061!2.51e-24!45;UBERON:0002193!1.03e-22!48;UBERON:0002405!1.03e-22!48;UBERON:0002368!1.31e-20!60;UBERON:0003929!1.24e-19!55;UBERON:0002530!6.65e-19!65;UBERON:0000949!6.51e-17!72;UBERON:0000490!4.23e-16!66;UBERON:0005911!2.48e-15!69;UBERON:0001041!5.32e-13!80;UBERON:0003081!8.03e-12!87;UBERON:0000064!3.49e-10!99;UBERON:0000926!1.78e-09!120;UBERON:0004120!1.78e-09!120;UBERON:0006603!1.78e-09!120;UBERON:0004921!1.30e-08!114;UBERON:0001007!1.96e-08!116;UBERON:0001555!1.96e-08!116;UBERON:0007026!1.96e-08!116;UBERON:0004119!2.92e-08!118;UBERON:0000925!2.92e-08!118;UBERON:0006595!2.92e-08!118;UBERON:0000475!3.23e-07!150;UBERON:0001048!4.66e-07!134
|tfbs_overrepresentation_for_novel_motifs=0.154282,0.413441,0.213094,0.803515,0.520285,0.251135,0.456171,0.2146,0.466756,0.0245769,0.349798,0.243717,2.55031,0.28487,0.311191,0,0.71098,0.480253,0.239107,0.430757,0.376857,0.446946,0.0504875,0.369267,0.365807,0.335259,1.84288,0.159049,0.999412,0.822487,0.433661,0.279781,0.0833332,0.283097,0.205169,3.8205,0.0364499,0.0396438,0.453641,0.569316,0.245123,0.274966,0.871139,0.455019,0.627656,0.10491,0.82323,1.05624,1.05356,0.182886,0.0424782,0.388142,0.381524,0.14798,0.15741,0.146875,0.117222,0.394534,0.445604,0.293925,0.0743041,0.211654,0.0240786,0.154441,0.0592213,0.74178,0.239758,0.504246,1.37869,0.385255,0.0158618,0.445394,0.00058158,1.00378,0.00967338,0.556826,2.52733,0.261886,0.516137,1.55464,0.240668,0.194831,0.209855,0.37513,0.11559,4.80506e-07,0.0407108,0.0826646,0.0286534,0.644359,1.42711,0.756207,0.0871653,0.399885,0.00296468,0.785714,0.521592,0.297139,0.516185,1.59179,0.0159841,0.279474,0.138831,0.0426394,0.372617,0.0034282,0.0603843,0.174718,0.408105,0.0784718,0.809686,0.432056,0.258369,0.0936307,0.292119,0.655551,2.17542e-05,0.384469,0.0477454,2.23307,1.61007,0.322363,0.568242,0.48774,0.331268,1.34514,0.477301,0.286428,0.238763,0.110797,0.130183,0.210916,0.6267,0.544363,0.307533,0.632544,0.450714,0.149447,0.272864,0.984367,0.616235,0.680889,0.0709003,1.02058,0.0406241,0.933448,0.0282779,0.946754,0.662115,0.529365,0.189351,4.43638e-09,0.148817,0.0669597,0.160324,0.568725,0.643558,0.144416,0.263836,0.166642,0.765125,1.77942,0.244566,0.140775,0.640349,0.0564811,0.567445,0.0404003,0.00016553
}}

Latest revision as of 14:45, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:77013630..77013661,+p@chr10:77013630..77013661
+
Mm9::chr10:88943756..88943761,-p@chr10:88943756..88943761
-
Mm9::chr11:103101182..103101189,-p6@Map3k14
Mm9::chr11:78199896..78199915,-p@chr11:78199896..78199915
-
Mm9::chr12:74609653..74609682,-p@chr12:74609653..74609682
-
Mm9::chr13:113886116..113886128,+p@chr13:113886116..113886128
+
Mm9::chr13:113891179..113891196,-p1@Gzma
Mm9::chr13:19284660..19284672,-p@chr13:19284660..19284672
-
Mm9::chr13:19284715..19284718,-p@chr13:19284715..19284718
-
Mm9::chr13:22098274..22098286,-p5@Prss16
Mm9::chr13:22098401..22098419,+p@chr13:22098401..22098419
+
Mm9::chr13:22098433..22098443,+p@chr13:22098433..22098443
+
Mm9::chr13:22098458..22098471,+p@chr13:22098458..22098471
+
Mm9::chr13:6554640..6554680,+p@chr13:6554640..6554680
+
Mm9::chr15:102054891..102054896,-p@chr15:102054891..102054896
-
Mm9::chr15:102054924..102054934,-p@chr15:102054924..102054934
-
Mm9::chr15:99232242..99232257,+p@chr15:99232242..99232257
+
Mm9::chr17:31121023..31121034,+p@chr17:31121023..31121034
+
Mm9::chr17:84304988..84304996,+p@chr17:84304988..84304996
+
Mm9::chr18:36049329..36049351,+p@chr18:36049329..36049351
+
Mm9::chr18:75343523..75343537,+p@chr18:75343523..75343537
+
Mm9::chr19:25135498..25135543,+p@chr19:25135498..25135543
+
Mm9::chr19:25746717..25746730,-p1@2610016A17Rik
Mm9::chr19:25746737..25746748,-p2@2610016A17Rik
Mm9::chr1:153099138..153099142,-p@chr1:153099138..153099142
-
Mm9::chr1:167977954..167977965,-p@chr1:167977954..167977965
-
Mm9::chr1:167977972..167977981,-p@chr1:167977972..167977981
-
Mm9::chr1:21339679..21339700,+p1@Khdc1a
Mm9::chr1:82816230..82816240,+p@chr1:82816230..82816240
+
Mm9::chr2:11526662..11526665,-p@chr2:11526662..11526665
-
Mm9::chr2:127336845..127336856,-p@chr2:127336845..127336856
-
Mm9::chr2:147188171..147188184,-p1@ENSMUST00000140987
Mm9::chr2:147190725..147190747,+p2@Pax1
Mm9::chr2:147190749..147190769,+p1@Pax1
Mm9::chr2:147190772..147190783,+p3@Pax1
Mm9::chr2:147199584..147199599,+p@chr2:147199584..147199599
+
Mm9::chr2:147199645..147199655,+p@chr2:147199645..147199655
+
Mm9::chr2:147199683..147199691,+p@chr2:147199683..147199691
+
Mm9::chr2:147199771..147199784,+p@chr2:147199771..147199784
+
Mm9::chr2:147201264..147201265,+p@chr2:147201264..147201265
+
Mm9::chr2:147261234..147261246,+p@chr2:147261234..147261246
+
Mm9::chr2:168374548..168374559,+p@chr2:168374548..168374559
+
Mm9::chr3:135359779..135359792,-p@chr3:135359779..135359792
-
Mm9::chr3:135359806..135359811,-p@chr3:135359806..135359811
-
Mm9::chr3:135359835..135359842,-p@chr3:135359835..135359842
-
Mm9::chr3:7606505..7606519,-p@chr3:7606505..7606519
-
Mm9::chr3:7606533..7606550,-p@chr3:7606533..7606550
-
Mm9::chr3:7613738..7613765,-p1@Il7
Mm9::chr3:7613771..7613785,-p3@Il7
Mm9::chr3:89466441..89466474,+p6@Kcnn3
Mm9::chr3:89466603..89466638,+p2@Kcnn3
Mm9::chr3:89466639..89466650,+p5@Kcnn3
Mm9::chr4:102656813..102656824,-p@chr4:102656813..102656824
-
Mm9::chr4:125998389..125998402,+p@chr4:125998389..125998402
+
Mm9::chr4:139463936..139463976,+p@chr4:139463936..139463976
+
Mm9::chr4:148326988..148327026,-p@chr4:148326988..148327026
-
Mm9::chr4:148327104..148327128,-p@chr4:148327104..148327128
-
Mm9::chr4:148588267..148588305,-p3@Kif1b
Mm9::chr4:41577003..41577010,+p@chr4:41577003..41577010
+
Mm9::chr4:48447876..48447889,-p@chr4:48447876..48447889
-
Mm9::chr4:48447971..48447980,-p@chr4:48447971..48447980
-
Mm9::chr4:59927907..59927935,-p1@Slc46a2
Mm9::chr4:63815395..63815439,+p@chr4:63815395..63815439
+
Mm9::chr5:65810372..65810401,-p@chr5:65810372..65810401
-
Mm9::chr6:41483203..41483218,+p1@ENSMUST00000103283
Mm9::chr6:41483219..41483226,+p@chr6:41483219..41483226
+
Mm9::chr6:41483245..41483256,+p@chr6:41483245..41483256
+
Mm9::chr6:67289633..67289651,-p4@Il12rb2
Mm9::chr6:73583092..73583099,+p@chr6:73583092..73583099
+
Mm9::chr6:83145803..83145819,+p@chr6:83145803..83145819
+
Mm9::chr6:83145832..83145843,+p@chr6:83145832..83145843
+
Mm9::chr6:83145870..83145875,+p@chr6:83145870..83145875
+
Mm9::chr6:83145917..83145951,+p@chr6:83145917..83145951
+
Mm9::chr6:83145954..83145971,+p@chr6:83145954..83145971
+
Mm9::chr7:120532077..120532092,-p1@Pth
Mm9::chr7:123381898..123381906,-p@chr7:123381898..123381906
-
Mm9::chr7:123381926..123381941,-p@chr7:123381926..123381941
-
Mm9::chr7:137768069..137768087,+p@chr7:137768069..137768087
+
Mm9::chr7:137768096..137768115,+p@chr7:137768096..137768115
+
Mm9::chr7:148197257..148197268,-p@chr7:148197257..148197268
-
Mm9::chr8:101970650..101970654,-p@chr8:101970650..101970654
-
Mm9::chr8:125921662..125921675,+p5@Tcf25
Mm9::chr8:126721005..126721023,+p@chr8:126721005..126721023
+
Mm9::chr8:126721039..126721054,+p@chr8:126721039..126721054
+
Mm9::chr8:127998851..127998880,-p@chr8:127998851..127998880
-
Mm9::chr8:87396665..87396673,+p6@Syce2
Mm9::chr9:103401551..103401590,-p@chr9:103401551..103401590
-
Mm9::chr9:103401622..103401629,-p@chr9:103401622..103401629
-
Mm9::chr9:103401650..103401656,-p@chr9:103401650..103401656
-
Mm9::chr9:103402685..103402731,-p@chr9:103402685..103402731
-
Mm9::chr9:44819528..44819537,-p@chr9:44819528..44819537
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
thymus6.28e-4923
neck6.28e-4923
respiratory system epithelium6.28e-4923
hemolymphoid system gland6.28e-4923
pharyngeal epithelium6.28e-4923
thymic region6.28e-4923
pharyngeal gland6.28e-4923
entire pharyngeal arch endoderm6.28e-4923
thymus primordium6.28e-4923
early pharyngeal endoderm6.28e-4923
pharynx7.78e-4724
gland of gut7.78e-4724
upper respiratory tract7.78e-4724
chordate pharynx7.78e-4724
pharyngeal arch system7.78e-4724
pharyngeal region of foregut7.78e-4724
segment of respiratory tract1.75e-4127
hemopoietic organ1.57e-3829
immune organ1.57e-3829
mixed endoderm/mesoderm-derived structure1.09e-3135
organ segment1.09e-3135
craniocervical region9.06e-3136
respiratory tract7.65e-2741
respiratory system3.61e-2642
anterior region of body1.58e-2543
hematopoietic system2.51e-2445
blood island2.51e-2445
hemolymphoid system1.03e-2248
immune system1.03e-2248
endocrine gland1.31e-2060
gut epithelium1.24e-1955
gland6.65e-1965
endocrine system6.51e-1772
unilaminar epithelium4.23e-1666
endo-epithelium2.48e-1569
foregut5.32e-1380
lateral plate mesoderm8.03e-1287
organ part3.49e-1099
mesoderm1.78e-09120
mesoderm-derived structure1.78e-09120
presumptive mesoderm1.78e-09120
subdivision of digestive tract1.30e-08114
digestive system1.96e-08116
digestive tract1.96e-08116
primitive gut1.96e-08116
endoderm-derived structure2.92e-08118
endoderm2.92e-08118
presumptive endoderm2.92e-08118
organism subdivision3.23e-07150
primordium4.66e-07134


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.13.74215e-09
MA0004.10.0149642
MA0006.10.029491
MA0007.10.101521
MA0009.10.0928333
MA0014.12.92286e-05
MA0017.10.548396
MA0019.10.314885
MA0024.10.26105
MA0025.10.619976
MA0027.11.46842
MA0028.10.0140498
MA0029.10.0673624
MA0030.10.245144
MA0031.10.0575142
MA0038.10.848593
MA0040.10.0982013
MA0041.10.679275
MA0042.10.435127
MA0043.10.138312
MA0046.10.108663
MA0048.10.110973
MA0050.10.718449
MA0051.11.23106
MA0052.10.101741
MA0055.11.88413
MA0056.10
MA0057.10.875242
MA0058.10.0392724
MA0059.10.100423
MA0060.10.151407
MA0061.10.470769
MA0063.10
MA0066.10.807414
MA0067.12.20569
MA0068.10.527189
MA0069.10.682788
MA0070.10.322428
MA0071.10.16292
MA0072.10.3126
MA0073.13.92817
MA0074.10.120916
MA0076.10.0259487
MA0077.10.288075
MA0078.10.685394
MA0081.10.0236951
MA0083.10.137903
MA0084.10.549913
MA0087.10.372489
MA0088.11.45012
MA0089.10
MA0090.10.167053
MA0091.10.868165
MA0092.10.653208
MA0093.10.00514347
MA0095.10
MA0098.10
MA0100.10.0385388
MA0101.10.488642
MA0103.10.801088
MA0105.10.719763
MA0106.10.0914995
MA0107.10.408222
MA0108.20.15195
MA0109.10
MA0111.10.713899
MA0113.10.377143
MA0114.10.149336
MA0115.10.85177
MA0116.10.58391
MA0117.10.390534
MA0119.10.111811
MA0122.10.133389
MA0124.10.254543
MA0125.10.206743
MA0130.10
MA0131.10.0320964
MA0132.10
MA0133.10
MA0135.10.157709
MA0136.10.285757
MA0139.10.511837
MA0140.10.917719
MA0141.10.0309552
MA0142.10.759841
MA0143.10.213485
MA0144.10.345217
MA0145.10.476387
MA0146.10.00633623
MA0147.10.0327887
MA0148.10.135718
MA0149.11.22081
MA0062.20.00873203
MA0035.20.420697
MA0039.20.0189779
MA0138.20.0303213
MA0002.21.4572
MA0137.20.345901
MA0104.20.0198897
MA0047.20.167788
MA0112.20.0399626
MA0065.20.177812
MA0150.10.996242
MA0151.10
MA0152.10.561052
MA0153.10.166956
MA0154.10.466603
MA0155.10.100874
MA0156.10.201582
MA0157.10.0435681
MA0158.10
MA0159.10.317275
MA0160.10.139315
MA0161.10
MA0162.12.52293e-08
MA0163.10.0149708
MA0164.10.140469
MA0080.20.575341
MA0018.20.0555964
MA0099.21.65578
MA0079.20.208642
MA0102.20.595199
MA0258.10.120461
MA0259.10.0539169
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:129&oldid=3072128"