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MCL coexpression mm9:177: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=-0.00240966286288546,0,0,0,0,0,0,0.374513233708258,0.0254888772271563,0,0,0,0.441173751752316,0.347112449340756,0.333320836856737,0.416110232610666,0.0661505559472728,0.87314466179182,0.897034196809179,0.823044455836963,0.0669838658936903,0.222466784174078,0.222542431939135,0.189033113151139,0.109066226966774,0,0,0,0,0,0,-0.0817525223528981,-0.091558018055706,-0.091558018055706,0,0,0,0.875412018515503,0.750163563199181,0.862802766226363,1.10600822256749,1.04927744762695,0.942908745924653,0,0,0,-0.034489466458534,-0.0805105854221362,-0.0578074284787346,-0.0310417947818604,-0.0462836173219311,-0.0805105854221362,0.729354975306397,0.236880264493592,0.224763912273562,0,0,0,-0.0797901069290224,-0.0766532980566393,-0.0797901069290224,-0.0363467475986097,-0.0797901069290224,0,0,0,0,0,-0.0817525223528981,-0.0554832628550177,-0.0585791582346112,0,-0.0253988765563989,-0.0805105854221362,-0.0844548031114009,-0.0805105854221362,0,0,0,-0.0578074284787346,-0.034489466458534,-0.034489466458534,0,0,0,0,0,0,-0.00278772287608693,-0.0251056771526468,0.0503535714110284,0,-0.0817525223528981,-0.0519560848465285,0,0,0.107511441879825,0,0,-0.0587804920169517,-0.0079945293179795,-0.034489466458534,-0.0805105854221362,-0.112067779638927,-0.0484021568339277,-0.00157699291368932,-0.0212599230309195,0.127930999153497,0.888313468258831,0.0601091194109999,-0.0408370891017693,0,0,0,0.016484459159927,0,0,0.154757193393576,0.436601190400051,0.0419448968813943,0.224810498718625,0.232941608744625,0,0,0,0.098801861608942,0.0932921651944173,0,0.111303922686536,0,0,-0.0117758893871054,0,0,0,0,0,0.299998574286809,0.080800456125884,0.0829439327499637,-0.0266653758999112,-0.034489466458534,-0.043432036624206,0,0,0,0,0.0698604184800114,-0.115273356048929,-0.034489466458534,-0.034489466458534,-0.0306128115597762,0,0,0.0603722485450701,0,0.0365993330739006,0.0694227874271384,0.195436618912525,0,0,0,0,0,0,0,0,0,0,0.058368463017668,0.064712946078928,0.0592603993571966,0.0861996515928926,0.103260628842442,0,-0.00804980712778061,0,0,-0.0281037877212337,-0.00886537252208353,0,0,0,0,0.0573279924303582,0,0,0.0031211283861956,0.0721037779758912,0.0035489192233259,0.0504934102017208,0.0788703512227347,-0.0399394595789583,0,0,0,0,0,0.0337784818606167,0.0604529824632536,0.0320435746393175,0,0,0,0,0,0,0.0761137306012826,0.0674167885035447,0.147726225466111,0.121976689400977,0,0,0.0845580120548775,0.0907671971930429,0,0.0133104144065603,0,0.360455631223589,-0.0655808321161496,0,0,0,0.0672592169170953,0.0927359537809747,0.128478583586095,0.16140131507059,0.149188566952223,0.151853097530015,0.282029855122338,0.344155385570819,0.280322898497325,0.129192551113592,0.131364639664379,0.106066860067276,0.111066208123973,0,0,-0.0817525223528981,0.0700425213479803,-0.0269347565986447,-0.0797901069290224,0,-0.0273964438681921,0,-0.0228271552348382,-0.00685120292760943,0,0,0,0.0832118943926934,0,0,0.108009041183646,0,0,0,0,0,0,0.0167560262730361,0.035714641348173,0,0.0799698831813763,0,0.00485254810257951,0.0356892333264238,-0.000207419460221292,-0.044419098473251,-0.00703237250688959,0,0,0,-0.0193491781601406,0.0550555316712623,0,0,0.0700988428126261,0.0367828169757108,0.0259168924091331,0,0,0.08883760502615,0,0.459329101590348,0.121458059813684,0.24074341674033,0.328422570374201,0.431848650606944,0.485579982245155,0.127090816446242,0.181241735124101,0.172932746254877,0,-0.034489466458534,0,0,0,0.0167734163354554,0,0.034489466458534,0.00450262151792735,0.0180460132154765,0.142849937450701,-0.0669067462446903,0,-0.0159522365596958,0,0,0,0,0,0,0,0,0.276862764796695,0,0.0424616899933645,0.0769961219441296,0.103939601865414,0.117250852102192,0.133726109153694,0.136948729348142,0.119972582379538,0.0894177291216067,0.148955215116522,0.224905669662194,0.20162748655662,0.286684384770788,0.0693854038034234,-0.0817525223528981,-0.0755415761833665,-0.0162767198349412,0.0767094571656325,0.107836705780157,0.0730404042754446,0.0744416328644891,0.0644784117963898,0,0,0,0,0,0,0,0,0,0,-0.0817525223528981,-0.0201330397299306,-0.00567856566343367,0,-0.0240428802122999,-0.0171025091832377,0,0,0,0,0,0,0.0388749848471105,0.013882953198784,0.0242538736058389,0,0,0,0,0,0.0230192500979762,0.000924382673091251,0,0,0,0.0228662864090932,0.00499429016094732,0,0,0,0,0,0,0,0,0,0.0365806420847467,0.0109893484202027,0,0.0865703124974023,0.0905641158318875
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!2.36e-11!48;UBERON:0002405!2.36e-11!48;UBERON:0002390!7.03e-10!45;UBERON:0003061!7.03e-10!45;UBERON:0003081!3.08e-08!87;UBERON:0000926!2.46e-07!120;UBERON:0004120!2.46e-07!120;UBERON:0006603!2.46e-07!120;UBERON:0000077!5.81e-07!35
}}

Latest revision as of 14:50, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:19654098..19654123,+p3@Map3k5
Mm9::chr10:22022300..22022354,-p1@uc007eph.1
p1@uc007epi.1
Mm9::chr11:45869667..45869677,+p4@Adam19
Mm9::chr11:94071142..94071166,+p@chr11:94071142..94071166
+
Mm9::chr12:102075624..102075643,-p@chr12:102075624..102075643
-
Mm9::chr12:70576497..70576542,-p1@5830428M24Rik
Mm9::chr13:24743303..24743307,+p@chr13:24743303..24743307
+
Mm9::chr13:41582464..41582509,+p@chr13:41582464..41582509
+
Mm9::chr13:41582510..41582539,+p@chr13:41582510..41582539
+
Mm9::chr13:41582675..41582715,-p2@Nedd9
Mm9::chr13:67461490..67461531,-p1@Zfp595
p1@Zfp953
Mm9::chr14:34007113..34007124,-p@chr14:34007113..34007124
-
Mm9::chr14:47451659..47451732,-p1@Gm10101
Mm9::chr14:70575163..70575202,-p6@Pdlim2
Mm9::chr14:75415821..75415830,+p3@5031414D18Rik
Mm9::chr15:5058492..5058565,-p1@Card6
Mm9::chr15:74762724..74762736,+p@chr15:74762724..74762736
+
Mm9::chr15:91503616..91503699,+p1@Lrrk2
Mm9::chr15:91503712..91503724,+p@chr15:91503712..91503724
+
Mm9::chr15:91507447..91507451,+p@chr15:91507447..91507451
+
Mm9::chr16:94444755..94444766,-p@chr16:94444755..94444766
-
Mm9::chr17:34492178..34492196,+p@chr17:34492178..34492196
+
Mm9::chr17:50648881..50648922,+p1@Plcl2
Mm9::chr17:66426152..66426180,-p@chr17:66426152..66426180
-
Mm9::chr19:12638953..12638980,+p@chr19:12638953..12638980
+
Mm9::chr19:26681226..26681299,+p7@Smarca2
Mm9::chr19:40969182..40969226,+p1@Zfp518a
Mm9::chr1:165993418..165993435,+p@chr1:165993418..165993435
+
Mm9::chr1:53840652..53840657,-p@chr1:53840652..53840657
-
Mm9::chr1:65277347..65277376,+p@chr1:65277347..65277376
+
Mm9::chr1:87546583..87546595,+p1@Sp100
Mm9::chr2:112105891..112105917,+p5@Slc12a6
Mm9::chr2:112105940..112105951,+p7@Slc12a6
Mm9::chr2:112105966..112106015,+p2@Slc12a6
Mm9::chr2:13493642..13493646,-p@chr2:13493642..13493646
-
Mm9::chr2:13496593..13496656,-p@chr2:13496593..13496656
-
Mm9::chr3:102800046..102800083,+p2@Sike1
Mm9::chr3:19935269..19935283,-p2@Hps3
Mm9::chr3:19935285..19935325,-p1@Hps3
Mm9::chr3:59014803..59014805,-p1@P2ry13
Mm9::chr4:135429461..135429521,-p2@Pnrc2
Mm9::chr4:147183911..147183930,-p1@Gm13157
Mm9::chr5:100999251..100999268,+p@chr5:100999251..100999268
+
Mm9::chr5:121262515..121262548,-p1@Oas1c
Mm9::chr5:150921201..150921259,+p1@Fry
Mm9::chr5:65884113..65884128,-p3@1110003E01Rik
Mm9::chr6:87446273..87446326,-p2@Arhgap25
Mm9::chr7:111392979..111393005,+p2@Trim34a
Mm9::chr7:16633729..16633796,+p@chr7:16633729..16633796
+
Mm9::chr7:25689149..25689160,-p@chr7:25689149..25689160
-
Mm9::chr7:29566353..29566399,-p1@Gm19897
Mm9::chr7:80753823..80753860,+p@chr7:80753823..80753860
+
Mm9::chr7:82731089..82731106,+p@chr7:82731089..82731106
+
Mm9::chr7:87948107..87948118,-p2@Iqgap1
Mm9::chr8:125394469..125394500,+p1@uc009ntw.1
Mm9::chr8:68910191..68910207,+p1@March1
Mm9::chr8:74713512..74713563,+p1@Hsh2d
Mm9::chr9:41950159..41950175,+p@chr9:41950159..41950175
+
Mm9::chr9:45753246..45753276,-p8@Sidt2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system2.36e-1148
immune system2.36e-1148
hematopoietic system7.03e-1045
blood island7.03e-1045
lateral plate mesoderm3.08e-0887
mesoderm2.46e-07120
mesoderm-derived structure2.46e-07120
presumptive mesoderm2.46e-07120
mixed endoderm/mesoderm-derived structure5.81e-0735


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.602602
MA0004.10.896824
MA0006.10.0892228
MA0007.10.164772
MA0009.10.538516
MA0014.10.504818
MA0017.10.228254
MA0019.10.0883142
MA0024.10.157279
MA0025.10.342799
MA0027.11.65398
MA0028.10.100411
MA0029.10.145235
MA0030.10.45489
MA0031.10.808787
MA0038.10.712735
MA0040.10.190395
MA0041.10.101136
MA0042.10.194649
MA0043.11.26999
MA0046.10.20494
MA0048.10.732909
MA0050.11.90289
MA0051.11.13169
MA0052.10.195353
MA0055.10.411835
MA0056.10
MA0057.10.177984
MA0058.10.531776
MA0059.10.0319427
MA0060.10.125138
MA0061.10.0166666
MA0063.10
MA0066.10.044281
MA0067.10.430063
MA0068.10.12608
MA0069.10.195563
MA0070.10.189602
MA0071.10.719976
MA0072.10.542517
MA0073.10.00350958
MA0074.10.138389
MA0076.10.439699
MA0077.10.171562
MA0078.10.0613579
MA0081.12.06979
MA0083.10.24412
MA0084.10.713965
MA0087.10.617244
MA0088.10.15435
MA0089.10
MA0090.10.290531
MA0091.10.199697
MA0092.10.291135
MA0093.11.04262
MA0095.10
MA0098.10
MA0100.10.559249
MA0101.10.102315
MA0103.10.620914
MA0105.10.00516118
MA0106.10.0641301
MA0107.10.124995
MA0108.20.0983687
MA0109.10
MA0111.10.158807
MA0113.10.442484
MA0114.10.0441704
MA0115.10.246547
MA0116.10.679122
MA0117.10.225068
MA0119.10.219174
MA0122.10.67003
MA0124.10.38753
MA0125.10.880447
MA0130.10
MA0131.10.0863813
MA0132.10
MA0133.10
MA0135.10.742811
MA0136.11.90315
MA0139.10.663576
MA0140.10.128943
MA0141.10.47658
MA0142.10.122435
MA0143.10.216794
MA0144.10.18425
MA0145.11.31126
MA0146.10.42645
MA0147.10.117014
MA0148.10.203731
MA0149.10.227517
MA0062.22.31607
MA0035.20.312547
MA0039.20.950752
MA0138.20.592463
MA0002.20.505563
MA0137.20.287756
MA0104.20.10211
MA0047.20.402148
MA0112.20.476435
MA0065.20.130469
MA0150.10.0129305
MA0151.10
MA0152.10.402338
MA0153.10.281412
MA0154.10.213863
MA0155.10.120594
MA0156.12.33333
MA0157.10.346918
MA0158.10
MA0159.10.765662
MA0160.10.400944
MA0161.10
MA0162.10.0986339
MA0163.10.144833
MA0164.10.357348
MA0080.22.6261
MA0018.20.16415
MA0099.20.0804604
MA0079.20.0100892
MA0102.20.761914
MA0258.10.988406
MA0259.10.0473885
MA0442.10
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