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MCL coexpression mm9:518: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!3.60e-16!32;CL:0002032!3.60e-16!32;CL:0000037!3.60e-16!32;CL:0000566!3.60e-16!32;CL:0000837!3.60e-16!32;CL:0002320!4.37e-12!46;CL:0000134!4.37e-12!46;CL:0000034!3.19e-10!97;CL:0000219!7.58e-10!54;CL:0000049!1.83e-09!19;CL:0000838!1.46e-08!12;CL:0000542!7.37e-08!13;CL:0000051!7.37e-08!13;CL:0000723!1.91e-07!91;CL:0000048!1.91e-07!91
|ontology_enrichment_disease=DOID:0060100!1.86e-10!3;DOID:4045!1.86e-10!3
|ontology_enrichment_uberon=UBERON:0002384!4.37e-12!46
|tfbs_overrepresentation_for_novel_motifs=0.224466,0.153651,0.204219,0.716126,0.123731,0.269875,0.346405,0.237242,0.251553,0.236908,0.308886,0.336042,0.0670839,0.357027,0.134875,0,0.530547,0.377686,0.0594359,0.100162,0.523517,0.329508,0.937489,0.388504,0.210021,0.381085,0.781016,0.782755,0.154744,0.145734,0.275529,0.624931,0.373899,0.397142,1.34707,0.0302663,0.111136,0.332941,0.097604,0.0808072,0.384293,0.279796,0.295897,0.136236,0.314995,0.24907,0.457618,0.300372,0.415504,0.156829,0.514446,0.404841,0.584697,0.759566,0.776306,0.363247,0.490599,0.325117,0.424359,0.36147,0.606104,0.413233,0.0784106,0.504093,0.372973,0.541429,0.908031,1.25063,0.60172,1.10561,0.555733,0.246154,0.0681764,0.808562,0.181606,0.0433214,0.17621,0.447339,0.590017,0.531085,0.0707051,0.546623,1.86543,0.849185,0.69807,0.0177525,0.156995,0.145915,0.462057,1.41118,0.975915,0.702809,0.636995,0.127646,0.0951738,0.287636,0.503836,0.639644,0.457849,0.286529,0.358446,0.624668,0.742871,0.514993,0.514023,0.279432,0.569344,0.296997,0.183341,0.177945,0.218949,0.744577,1.02113,0.313258,0.982794,0.119923,0.0869445,0.26114,0.53175,0.352143,0.813766,0.484912,0.382687,1.13466,1.03573,0.593478,0.353461,0.630607,0.906557,0.129636,0.726634,0.252176,0.877862,0.375176,1.0039,0.546308,0.231086,0.280962,0.955897,1.77738,1.3796,0.91261,0.393303,0.634793,0.508066,0.766765,0.460443,1.73788,1.22575,0.124893,0.3445,0.0529032,0.761071,1.53499,0.374365,0.839715,0.405736,0.440483,0.222538,0.230865,0.96517,0.697256,1.44832,0.21719,0.50503,0.367885,0.356446,0.33468,2.75622
}}

Latest revision as of 15:26, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:76722099..76722109,+p@chr10:76722099..76722109
+
Mm9::chr12:33999198..33999233,+p8@Atxn7l1
Mm9::chr12:33999240..33999273,+p9@Atxn7l1
Mm9::chr12:35675282..35675287,+p@chr12:35675282..35675287
+
Mm9::chr14:37130256..37130260,+p@chr14:37130256..37130260
+
Mm9::chr16:91355479..91355497,-p@chr16:91355479..91355497
-
Mm9::chr17:84581343..84581354,+p@chr17:84581343..84581354
+
Mm9::chr17:88512729..88512739,-p@chr17:88512729..88512739
-
Mm9::chr5:32001148..32001175,+p@chr5:32001148..32001175
+
Mm9::chr5:3502574..3502588,-p@chr5:3502574..3502588
-
Mm9::chr5:91332890..91332906,+p1@Cxcl2
Mm9::chr5:98460354..98460366,-p15@Antxr2
Mm9::chr5:98460394..98460407,-p13@Antxr2
Mm9::chr8:129328067..129328075,-p@chr8:129328067..129328075
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
connective tissue4.37e-1246

Disease
Ontology termp-valuen
musculoskeletal system cancer1.86e-103
muscle cancer1.86e-103


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0263311
MA0004.10.258473
MA0006.10.817804
MA0007.10.246385
MA0009.10.649874
MA0014.10.0625332
MA0017.10.150118
MA0019.10.480432
MA0024.10.608636
MA0025.10.873493
MA0027.12.275
MA0028.10.848314
MA0029.10.588275
MA0030.10.594419
MA0031.10.561217
MA0038.10.381016
MA0040.10.661716
MA0041.10.198922
MA0042.10.189008
MA0043.10.74191
MA0046.10.683926
MA0048.10.289404
MA0050.10.290354
MA0051.10.388883
MA0052.10.669354
MA0055.10.0206669
MA0056.10
MA0057.10.0252827
MA0058.10.183941
MA0059.10.563468
MA0060.10.0819399
MA0061.11.64064
MA0063.10
MA0066.10.371389
MA0067.10.981551
MA0068.10.271058
MA0069.10.669676
MA0070.10.660488
MA0071.10.788348
MA0072.10.652465
MA0073.19.79163e-05
MA0074.10.340281
MA0076.10.952244
MA0077.11.52827
MA0078.11.07325
MA0081.11.14043
MA0083.10.741151
MA0084.11.30392
MA0087.10.699999
MA0088.10.569713
MA0089.10
MA0090.10.231074
MA0091.12.91706
MA0092.10.653984
MA0093.10.144649
MA0095.10
MA0098.10
MA0100.10.879972
MA0101.12.44159
MA0103.10.477056
MA0105.10.385363
MA0106.10.425111
MA0107.11.45792
MA0108.21.25225
MA0109.10
MA0111.10.242308
MA0113.11.03368
MA0114.10.0981613
MA0115.10.744589
MA0116.10.8172
MA0117.10.713754
MA0119.10.200349
MA0122.10.732707
MA0124.10.929684
MA0125.10.857794
MA0130.10
MA0131.10.476296
MA0132.10
MA0133.10
MA0135.10.77683
MA0136.11.67751
MA0139.10.499924
MA0140.10.879752
MA0141.10.171891
MA0142.10.547747
MA0143.10.414534
MA0144.11.11784
MA0145.10.189432
MA0146.10.0854135
MA0147.10.709361
MA0148.10.271704
MA0149.10.204102
MA0062.20.706083
MA0035.20.33429
MA0039.20.04606
MA0138.20.469076
MA0002.21.82632
MA0137.20.97737
MA0104.20.547442
MA0047.20.380343
MA0112.20.918188
MA0065.20.190247
MA0150.10.688872
MA0151.10
MA0152.10.990823
MA0153.10.792819
MA0154.10.118426
MA0155.10.22104
MA0156.13.68477
MA0157.10.518122
MA0158.10
MA0159.10.365914
MA0160.10.753068
MA0161.10
MA0162.10.0134677
MA0163.10.094989
MA0164.10.357779
MA0080.22.80791
MA0018.20.959515
MA0099.21.17093
MA0079.28.76579e-06
MA0102.21.35579
MA0258.10.626814
MA0259.10.331447
MA0442.10
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