FFCP PHASE1:Hg19::chr1:33168336..33168386,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81493 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28897 | |||
|TSSclassifier=strong | |||
|UniProt=Q9H7C4 | |||
|association_with_transcript=0bp_to_ENST00000373484,NM_001161708,NM_030786,uc001bvt.2,uc010ohl.1_5end | |||
|description=CAGE_peak_1_at_SYNC_5end | |||
|id=chr1:33168336..33168386,- | |||
|ontology_enrichment_celltype=CL:0000055!5.25e-37!180;CL:0000057!6.30e-20!75;CL:0000222!6.56e-15!119;CL:0000680!9.66e-15!57;CL:0000056!9.66e-15!57;CL:0000355!9.66e-15!57;CL:0000187!1.05e-13!54;CL:0000183!1.03e-12!59;CL:0000192!5.48e-12!42;CL:0000514!5.48e-12!42;CL:0000220!1.69e-11!246;CL:0002321!4.88e-11!248;CL:0000393!6.31e-11!60;CL:0000211!6.31e-11!60;CL:0002620!2.68e-09!23;CL:0000359!9.55e-09!32;CL:0000136!8.97e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.20e-09;23!CL:0000192;3.81e-09;43!CL:0000187;1.32e-08;55!CL:0000359;1.55e-08;32!CL:0000057;2.56e-08;73!CL:0002320;1.87e-07;188!CL:0000499;5.17e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.19e-21,76;CL:0000680,3.33e-15,58;CL:0000056,3.33e-15,58;CL:0000355,3.33e-15,58;CL:0000222,1.04e-14,121;CL:0000187,3.91e-14,55;CL:0000192,2.46e-12,43;CL:0000514,2.46e-12,43;CL:0000393,1.73e-11,61;CL:0000211,1.73e-11,61;CL:0002321,1.09e-09,250;CL:0002620,1.41e-09,23;CL:0000359,5.25e-09,32;CL:0000136,5.79e-07,15;CL:0000499,5.90e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000514;3.81e-09;43!CL:0000355;1.74e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.36e-22!83;UBERON:0002329!5.36e-22!83;UBERON:0003077!5.36e-22!83;UBERON:0003059!5.36e-22!83;UBERON:0007282!5.36e-22!83;UBERON:0009618!5.36e-22!83;UBERON:0007285!5.36e-22!83;UBERON:0000475!1.16e-18!365;UBERON:0004290!6.82e-18!70;UBERON:0000486!3.73e-17!82;UBERON:0002385!2.19e-16!63;UBERON:0001015!2.19e-16!63;UBERON:0000383!2.19e-16!63;UBERON:0001134!3.50e-16!61;UBERON:0002036!3.50e-16!61;UBERON:0003082!3.50e-16!61;UBERON:0005256!3.77e-14!143;UBERON:0000481!1.47e-13!347;UBERON:0003102!3.82e-13!95;UBERON:0000468!2.32e-12!659;UBERON:0002100!3.62e-11!216;UBERON:0000467!7.99e-11!625;UBERON:0000480!1.38e-10!626;UBERON:0002049!6.39e-10!79;UBERON:0007798!6.39e-10!79;UBERON:0004872!9.41e-10!84;UBERON:0000119!9.76e-10!312;UBERON:0003104!1.82e-09!238;UBERON:0009142!1.82e-09!238;UBERON:0000483!2.09e-09!309;UBERON:0004573!5.35e-09!33;UBERON:0004571!5.35e-09!33;UBERON:0000477!6.53e-09!286;UBERON:0002199!4.50e-08!45;UBERON:0002416!4.50e-08!45;UBERON:0001637!6.04e-08!42;UBERON:0003509!6.04e-08!42;UBERON:0004572!6.04e-08!42;UBERON:0001981!7.82e-08!60;UBERON:0007500!7.82e-08!60;UBERON:0004537!7.82e-08!60;UBERON:0006965!7.82e-08!60;UBERON:0002097!1.97e-07!40;UBERON:0000490!2.18e-07!138;UBERON:0000055!2.76e-07!69;UBERON:0001009!4.67e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.42e-10;31!UBERON:0001015;1.42e-10;31!UBERON:0000383;1.42e-10;31!UBERON:0004573;2.86e-08;33!UBERON:0004571;2.86e-08;33!UBERON:0002204;7.86e-08;70!UBERON:0002384;2.89e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.04e-18,73;UBERON:0002329,1.79e-18,71;UBERON:0003059,1.79e-18,71;UBERON:0007282,1.79e-18,71;UBERON:0004290,1.79e-18,71;UBERON:0009618,1.79e-18,71;UBERON:0003077,3.26e-18,72;UBERON:0007285,3.26e-18,72;UBERON:0007503,2.43e-17,78;UBERON:0000486,3.77e-17,83;UBERON:0002385,6.56e-17,64;UBERON:0001015,6.56e-17,64;UBERON:0000383,6.56e-17,64;UBERON:0001134,1.08e-16,62;UBERON:0002036,1.08e-16,62;UBERON:0003082,1.08e-16,62;UBERON:0003102,1.09e-13,99;UBERON:0005256,7.28e-11,122;UBERON:0003104,1.42e-10,160;UBERON:0009142,1.42e-10,160;UBERON:0002049,1.90e-09,78;UBERON:0007798,1.90e-09,78;UBERON:0004573,2.88e-09,33;UBERON:0004571,2.88e-09,33;UBERON:0004872,5.85e-09,83;UBERON:0000119,6.92e-09,309;UBERON:0000483,1.45e-08,306;UBERON:0002199,1.51e-08,46;UBERON:0002416,1.51e-08,46;UBERON:0000490,4.97e-08,148;UBERON:0001637,5.93e-08,42;UBERON:0003509,5.93e-08,42;UBERON:0004572,5.93e-08,42;UBERON:0002097,6.99e-08,41;UBERON:0007500,2.66e-07,59;UBERON:0001981,2.66e-07,59;UBERON:0004537,2.66e-07,59;UBERON:0006965,2.66e-07,59;UBERON:0001009,4.26e-07,112;UBERON:0002100,7.46e-07,199;UBERON:0000055,7.55e-07,68 | |||
|phase1_expression=30.7036460967241,36.8252901092491,32.4195129420734,29.0212565224078,43.3552261594469,45.3616032532192,10.1319951267324,6.94891860769514,3.91778442299758,2.45733936501509,2.09340350391728,1.96597234917155,2.63766978228454,26.9810649452902,39.7676850873499,16.8081286612944,12.6565850885035,24.1002329827833,16.5897151588772,12.3121058076788,15.9120539170517,4.38836610069323,8.87331560106276,9.71808418017478,8.16027157366218,0,0,0,0,0,0,5.51652734687356,3.91567694411725,6.65557218300218,0,0,0,0,0,0.217010870715852,0,0,0.257575567634187,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,2.68280343881454,3.70801429346238,36.8667935432258,53.6431564380402,47.7993512570718,11.1340032587154,15.0856809793817,5.19941494402373,13.747222642679,9.13481771208511,3.40545596294053,1.45718115317017,4.07862887062872,5.51730569212962,3.48259474598534,2.6591592103773,0,0,0,2.78267370313387,3.4409383804245,3.81854551768354,2.82653970962005,4.61449379830897,0.550236083880135,2.08994966536811,3.35941786920128,3.5576626268671,1.33888245105868,3.22263453687318,6.0821768457481,6.83373761134875,1.83831540172934,1.62028389576352,3.12549048994279,2.91888184414021,2.0270066486998,0,1.89853131913626,1.28241220751285,0,0,1.74437620857014,28.3274012466332,22.5402310762952,25.0253351736984,13.7681577959431,18.0880874921162,31.9586232081115,4.2699598291882,8.6333641946006,11.5148083097914,3.50247747381189,3.10577615915572,6.96244167166684,4.03323147135999,4.45210720484214,7.17968176709737,5.13424639390004,4.33401173600223,3.87533845524424,7.12240955219779,6.03938468819669,14.6991003303523,8.22989925988845,20.3551788916258,10.6920257155385,11.3742787468136,7.28129089550421,8.62341770179486,5.05008341862199,5.38009635449446,15.7926545825984,29.850478219897,38.3109744748775,16.375948420819,4.3104229600808,14.7099501264867,39.7216743202535,37.723878406402,24.0072876867522,39.0569085813683,19.8383215835134,34.2455015650125,19.7468308722281,40.9235421677034,29.7871853608055,40.2258057066848,31.8442731933059,23.0756235135799,38.8903099158691,36.7946485313758,11.4023903366345,9.27336810008838,7.1701148847251,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0,15.6449532329816,40.5241791061518,17.9575397758225,13.0023019848954,26.7095408217747,7.8082488026297,7.75489574359268,5.54325368732009,6.50734439121124,5.22910665821775,6.40630671599961,4.1797705529651,4.12065076763227,6.92544882503503,5.16708818237254,2.80483547606892,16.0513864419246,4.41026134156626,0,0,0.590789906681404,0,0,14.9263994959717,8.23127140564692,1.1240175325762,2.01057944823262,2.68506490959736,5.2129328849652,6.23960871167747,5.77325368101093,2.08674728955138,10.6841911754598,3.17606185074362,1.85194205030644,2.28304982681518,0,0,0.492434012174795,4.44608103764552,1.78357394746474,18.7467667973554,13.7745345123065,6.52165447314978,2.68675568108545,2.61570544662566,5.36735750831296,0.492663237895943,0.176096868026452,1.24396869324463,1.44119953416961,2.90357596880674,8.8262073066115,11.4596527667483,9.37739577680376,10.2643467613623,11.9279891535855,8.10926256178577,8.57479297891735,6.16720963899484,5.23152082599936,6.23375429478075,14.6077038806289,0,0.845302752556,20.7431730936199,19.7614130131596,3.60090323966999,4.25547396069835,3.99633268524149,10.2944155433866,3.25572963234866,2.46972101034231,3.25736184293735,13.1495021034742,0.791951872933429,32.2540133453757,54.0350744332182,25.0932207866963,0,0,0,50.3212196532324,29.8641033168696,15.690059554479,11.1481606134036,14.5888189010772,25.4266567800652,0,0,0,0,2.03275699377971,1.30139853857622,1.54657762555539,1.17261385734044,2.55175500661265,0,0,0,19.8760216585007,10.5035809422532,21.4299368722791,37.0188133524837,34.6152238266494,25.5477912354974,40.1795053425006,17.7558198839354,20.4666753650386,9.31257641632544,21.255219153134,33.0020811689649,14.9439816885103,0.783204629850962,2.74514739048685,0,0,0,0.606255142892519,6.65741758041988,3.62868351995616,22.5778105115087,27.009307298699,45.4669352981579,31.3940915676467,45.0302379178699,48.7387381065131,40.0728779401476,5.70575867069826,8.87808626565635,11.169293217878,12.9813607295905,11.7372482244559,0.241718899183244,9.62431057455767,0.552485933615378,17.3369816728556,23.3076695048598,31.6009840052212,2.25599806453706,2.0794141018192,1.56869953835371,0,1.68882606228601,1.13733384070897,1.70093705276516,4.75015015424707,3.08454505380579,4.33514300070165,2.00675909541941,1.52925763827023,2.49322802678617,2.91037181138832,0,0,1.28225062558195,1.64007322849853,1.95227036798582,0.824328093181778,6.68457093173907,5.77566499444116,5.74265537996172,1.95018073810956,43.3846610579231,6.96029171703278,8.47267394130544,9.05671680884164,4.13509717453592,12.0310674252466,16.2418697183936,8.09652960452959,7.03353081609225,6.11554186835619,7.87979276196935,3.70076866234294,2.023155617111,35.793107295891,16.9998667288546,13.2437081330514,4.92853728281742,12.7753447276085,16.5287268494264,20.3856641014312,18.3199855029749,16.3749682518254,21.5138008808734,30.1195706399643,9.21232048720802,4.2793898803392,14.0009429087412,4.70969184119538,19.2463529614147,31.2972213899102,24.2693548832114,10.9178540049591,11.0957224821106,26.1180242868168,13.1661109554189,10.4796800541452,4.22600587027022,12.2849920267187,21.6350310889181,11.3008116620243,27.0169018337601,17.2494133562717,11.8381739018516,11.5755106853338,17.0532635532125,1.42037263873893,3.40805847909725,2.53526042279017,4.30234056612155,8.84241369118091,1.426684205925,5.67617702512956,21.5329788003617,31.6123097241506,7.20999030154859,4.54915136318478,3.07910760721639,5.3624182042863,3.26672954583968,1.03558180854457,1.72202149068492,0,4.87773168890343,3.67557440331135,0,0,0,0,0,0,0.540031437238115,0,1.1750647824022,14.4371978289504,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,4.24873719888493,0,0,1.13654458722565,2.3874448473769,2.67268212749375,1.22864280839693,2.98244294329889,3.51673541026282,0,0,0,32.6766700731754,3.59169090190492,0,4.39755334759266,0,32.9701962921516,0.539210106883961,0,0,7.69418563968082,0,16.6705485216955,0.969332746095218,1.76259386507517,3.99227596002388,0,0,7.97499532978273,0.227586896570999,0,0,0,0,1.04174996959975,4.42870692906919,3.73848959738765,0,1.10579259931225,2.36438095162838,5.04586413454137,1.19832309870889,0.975966209950223,5.309567836762,7.17834951836108,0,0.0897576444097721,0.108647371922008,1.27600463892768,2.83952539545773,1.5991043280559,0,0.31396051279005,0.997270091400938,0,0,0.167821586975843,0,1.11255605286265,0,0,0,0,12.9384051040206,5.30745387020035,4.888241159469,0,0,0,3.77446344691791,20.0644411824697,2.10838001152805,0,0,0.485560759068186,1.57833761139756,0,1.83643656978294,5.93953848507787,0,0.311064574191741,0.664653872707185,0,0.313932918407225,0,0,0,6.76882979507011,0,1.74118413160805,7.33852006616527,1.0319161948297,3.96700958285249,2.85048336636124,5.91231290783106,14.9363085392166,16.3273834379275,2.71176888936639,2.19267079434801,0,1.83601308272048,0.195551382734803,0.400794101257669,4.69596588426576,3.79638258206047,0,0,0.171594997861965,0,1.36677789121976,2.35694034616795,4.89255141865011,4.49792239143033,0.917983958726896,3.46740707881823,2.40168115483916,1.77976992559591,0,55.4397419431745,0,6.98206003180636,19.0203151929697,0.717873024576814,4.19325901047881,8.15529491459485,9.59637267000052,2.35142153703542,38.9123874225796,0,0,0,0,0.196854963029498,0,2.38568906942791,4.22230558945884,0,0,0,0,0,2.42998226632099,0,1.33969702408637,0.472091293214983,0.528001682597033,0.179287339332845,3.83830394638891,9.29103924285377,8.60719561475061,15.256112259285,21.7199840701485,33.7046381568494,24.1674646480963,1.19730191562487,0,5.11164065356265,2.83280228800314,0.293104467356165,0,2.45637617086946,2.90911723833918,0.342173675768659,0,3.84434685243701,2.04365596629566,4.97086866416635,0.496166021811951,0,0,0,5.44017803369474,15.7934633234301,15.3172788381731,5.57383472206668,0,2.65820453990096,1.09823638411767,3.8809188519015,4.58727356552057,3.66065870071613,3.97416978824854,0.276697269872462,0.999843263696853,0.454947352624943,2.85465333544967,0.941063278792687,0,0.28984205722165,16.2687735146693,17.9959248582363,9.43169964554443,52.6540354664748,62.3888396346386,31.1433927558788,9.84012294106771,27.0703353536198,22.8492684856687,25.431085798217,11.9472575372777,14.843502701399,8.84998854194679,21.9794290155653,20.2039703064076,5.73919567992907,39.0669783392768,29.3220013369972,21.9710195930517,13.0931034625843,14.6078357577784,18.0973166352613,9.15620544006817,12.8008884692209,27.1282607094406,27.2767085900394,5.04739592914604,2.11881813448034,4.28883182749851,3.13193150358254,50.782127314749,32.6446688796606,3.18157715858408,16.2970845384154,17.6016824881754,16.2270196688243,9.3645247351317,15.4331230616732,0.337884881306145,3.07489822305536,3.45430341731199,10.9389584223858,2.21213497842769,0.584580926518165,0.531459361253452,0,5.89697727923543,9.09359762388761,0,0,0,0,6.81019144280203,4.23443685579234,0.139879507719444,3.11038630016486,0,0.107824811396682,0,0,0,0,0,0,47.064643896706,0,0,26.803371720492,17.1497467317792,1.86264752779733,0,2.39450788585727,2.46139637088906,1.26035848110859,1.65977405914123,1.93770774758221,1.42769420259154,0,0.11796972334774,4.03542916747694,0.115525666150338,22.1201615370957,0.690359926060101,1.98916222116275,7.37061217822721,13.1108294657288,0.781514011233092,0,1.63771917510097,0.591424344868181,1.89105236931505,0,1.65349437200947,1.96589011601111,3.28184885410932,4.93431990171464,18.8560247787932,0,0.255524855279191,1.07140367175657,0.336283722218824,1.82089681270989,0.227662191351298,0.975726071789027,0,0.342976018874837,2.58284985311961,2.30204707469972,0.590969204419841,1.22354542081276,3.9246546425257,2.04250266890802,0,7.30526976407596,1.29556554731173,0.47775168788705,4.71745191565932,0,0,0,38.4821455070521,8.49586273068451,13.486759690422,8.98637560358319,3.8720462293825,0.591660003652827,0.766920642832419,2.54032230114557,1.3746412112643,2.17144469965024,3.82215575590973,0.335566295393377,0,0,23.9548669759521,15.810072255862,9.27851545070559,5.34282092365053,0.467878926924211,0,1.30812099855325,0,0,0,3.08696632431779,2.18559560503957,0,14.9540476269882,0,3.53355240806901,4.45569600490629,5.4945244585842,33.4756415934999,1.31577485171795,2.32048396704878,0,0,0,0,6.57302749421866,4.58729283404541,1.86341458096887,0.946629373159108,1.49581278420012,1.30905207102113,1.0580536810308,42.4074320710097,45.7553872345104,40.6668968396362,0.126166424835079,0.109265571963696,0.126698501011437,0.101988829741982,0.534434810531121,2.02168778976659,0.250707539292375,4.77405798774908,5.62724673327975,2.48750831837634,1.65492793379032,10.87493307695,7.61806180683969,0.193766729508018,0.496597714366863,3.13969215225718,1.0820016907288,3.84022659020617,14.3693053611994,20.1917647640316,1.68380132536469,3.80127688581185,4.32458463509817,0.0814032686109745,0.320182037633146,32.8222879887798,0.718601616852695,4.69281884806909,7.33448665097199,7.32413120968329,1.33151354837103,3.22038069745642,0 | |||
|short_description=p1@SYNC | |||
}} |
Revision as of 17:39, 10 January 2014
Short description: | p1@SYNC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYNC_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000373484, NM_001161708, NM_030786, uc001bvt.2, uc010ohl.1_5end |
EntrezGene: | SYNC |
HGNC: | 28897 |
UniProt: | Q9H7C4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.19e-21 | 76 |
muscle precursor cell | 3.33e-15 | 58 |
myoblast | 3.33e-15 | 58 |
multi-potent skeletal muscle stem cell | 3.33e-15 | 58 |
mesodermal cell | 1.04e-14 | 121 |
muscle cell | 3.91e-14 | 55 |
smooth muscle cell | 2.46e-12 | 43 |
smooth muscle myoblast | 2.46e-12 | 43 |
electrically responsive cell | 1.73e-11 | 61 |
electrically active cell | 1.73e-11 | 61 |
embryonic cell | 1.09e-09 | 250 |
skin fibroblast | 1.41e-09 | 23 |
vascular associated smooth muscle cell | 5.25e-09 | 32 |
fat cell | 5.79e-07 | 15 |
stromal cell | 5.90e-07 | 28 |