FFCP PHASE1:Hg19::chr11:1892102..1892126,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4046 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6707 | |||
|TSSclassifier=strong | |||
|UniProt=E9PBD8 | |||
|association_with_transcript=0bp_to_ENST00000417766_5end | |||
|coexpression_cluster_id=C3126 | |||
|description=CAGE_peak_10_at_LSP1_5end | |||
|id=chr11:1892102..1892126,+ | |||
|ontology_enrichment_celltype=CL:0000153!7.58e-10!9;CL:0000447!7.58e-10!9;CL:0000667!4.26e-08!6;CL:0000058!4.26e-08!6;CL:0000138!4.26e-08!6;CL:0000515!4.56e-08!4;CL:0000188!1.12e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000153;2.57e-22;9!CL:0000447;2.57e-22;9!CL:0000138;1.12e-17;6!CL:0000056;1.02e-16;4!CL:0000135;1.22e-13;3!CL:0000388;1.22e-13;3!CL:0000499;2.77e-13;28!CL:0002564;5.43e-13;3!CL:0000327;5.56e-13;15!CL:0000515;8.68e-13;3!CL:0002602;4.64e-10;2!CL:0000680;1.37e-09;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,3.02e-22,9;CL:0000447,3.02e-22,9;CL:0000058,1.33e-17,6;CL:0000138,1.33e-17,6;CL:0000515,6.28e-17,4;CL:0000135,1.20e-13,3;CL:0000388,1.20e-13,3;CL:0000499,2.95e-13,28;CL:0000327,6.10e-13,15;CL:0002564,7.70e-13,3;CL:0002602,4.65e-10,2;CL:0002540,9.27e-07,6;CL:0002092,9.99e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000515;1.02e-16;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.18e-16!115;UBERON:0000153!3.54e-09!129;UBERON:0007811!3.54e-09!129;UBERON:0003075!5.04e-09!86;UBERON:0007284!5.04e-09!86;UBERON:0000033!1.15e-08!123;UBERON:0002346!2.78e-08!90;UBERON:0001049!1.10e-07!57;UBERON:0005068!1.10e-07!57;UBERON:0006241!1.10e-07!57;UBERON:0007135!1.10e-07!57;UBERON:0003056!2.52e-07!61;UBERON:0002616!3.01e-07!59;UBERON:0004121!5.35e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;2.96e-25;8!UBERON:0000982;2.96e-25;8!UBERON:0004770;2.96e-25;8!UBERON:0011135;2.70e-21;5!UBERON:0002216;2.70e-21;5!UBERON:0011134;2.70e-21;5!UBERON:0002209;2.70e-21;5!UBERON:0002213;2.70e-21;5!UBERON:0007844;2.70e-21;5!UBERON:0011138;2.70e-21;5!UBERON:0001130;2.70e-21;5!UBERON:0001066;2.70e-21;5!UBERON:0001468;2.70e-21;5!UBERON:0007846;1.22e-13;3!UBERON:0000043;1.22e-13;3!UBERON:0007845;1.22e-13;3!UBERON:0002242;5.43e-13;3!UBERON:0001134;2.04e-11;16!UBERON:0002036;2.04e-11;16!UBERON:0004765;2.22e-11;26!UBERON:0002204;1.44e-10;70!UBERON:0006444;4.64e-10;2!UBERON:0001995;4.64e-10;2!UBERON:0004715;4.64e-10;2!UBERON:0001434;4.65e-09;36!UBERON:0002418;5.87e-07;3!UBERON:0004755;5.87e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,4.04e-25,8;UBERON:0000982,4.04e-25,8;UBERON:0004770,4.04e-25,8;UBERON:0011135,3.86e-21,5;UBERON:0002216,3.86e-21,5;UBERON:0011134,3.86e-21,5;UBERON:0002209,3.86e-21,5;UBERON:0002213,3.86e-21,5;UBERON:0005856,3.86e-21,5;UBERON:0005866,3.86e-21,5;UBERON:0005863,3.86e-21,5;UBERON:0007844,3.86e-21,5;UBERON:0011138,3.86e-21,5;UBERON:0001130,3.86e-21,5;UBERON:0001066,3.86e-21,5;UBERON:0001468,3.86e-21,5;UBERON:0007846,1.20e-13,3;UBERON:0000043,1.20e-13,3;UBERON:0007845,1.20e-13,3;UBERON:0002242,7.70e-13,3;UBERON:0003068,7.70e-13,3;UBERON:0002328,7.70e-13,3;UBERON:0004880,7.70e-13,3;UBERON:0006444,4.65e-10,2;UBERON:0001995,4.65e-10,2;UBERON:0004715,4.65e-10,2;UBERON:0002418,5.88e-07,3;UBERON:0004755,5.88e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,3.3954131665979,0,0,0,0,16.2133922377661,12.2617029019329,0,0,0,0,0.123121058076788,0,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.50590474292219,6.51739283826656,3.18662341713812,3.9764297352555,5.35298357332899,0.0945348171640679,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03325781175765,0,0,0,0.718618141816238,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28648187638577,1.38134921352481,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0.651616610620649,8.31947828223663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7296933755565,0,0,0,0,0,0,0,5.96883765930587,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,5.70547620162874,1.44781306667579,11.7121503853719,1.79060963239896,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,5.5211171273613,4.50153468953709,1.08506009479894,0,0,0,0,0,0,0,0,0.184369168541703,0,0.391602314925481,0.343143423810856,0,0,0.106727557803444,0,0,0,0.248107807818777,0,0,0,0,0,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16004861950546,0,0.307007349452259,0.137836572484531,0,0.145016693914229,0.426133137080504,0.890320356467374,0,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294747123039363,0,0,4.43326034125095,4.61012850143863,0.379473173765715,1.04980416073495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0.23874448473769,0,0,0,0.281338832821026,0,0,0,1.39473591775749,1.10513566212459,0,0,0,0,0,0,0,0.493217028184668,0,0,0.969332746095218,0.278304294485554,0,0,0,0,0,0,0,1.37897349296586,0,0,0,0,0,0,0.295547618953547,0,0,0,0.923403102045565,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,1.60515529459758,0,0,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.59525312121252,0,0.451961481561065,0,0,0.759729551470544,0,0.0801588202515337,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0.458320848023367,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,1.0896272488926,0,0,0,0.449947783103001,6.96421759102155,0.607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.124192805882767,0,0,0,0,0,0.468334905806882,0,0.447764408660622,0,0,2.46223906857616,5.78606174030923,2.66943366478961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00013882331577,1.37358282073117,0.673498977531838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0.205116364240755,0,0.414943514785307,0.807378228159255,0,0,0,0,0,1.90691047733584,0,0,0,0,0.781514011233092,0,0,0,0.270150338473579,0,0,0.19024743058172,0,0,3.47347824872506,0,0,0,0,1.21393120847326,0.682986574053893,0,0,0.685952037749674,0.135939465953663,0.263091094251396,0,0,0.313972371402056,0,0,0,0,0,0.857718530119876,0,0,0,0,0,0.3414369541879,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0.307988420568741,2.3196288626764,0.971421986118279,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0,0,0,0,1.69171052363736,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,6.69591032700152,9.70568820125978,3.46101249699031,0,0,0,0,0,0,0,0.454672189309436,0,0,0.103432995861895,1.70587185520785,0.476128862927481,0,0,0,0,0,3.9189014621453,2.05339980651169,1.27968900727716,0,0.99798106963804,0,0,0,0,0,0.244482888365733,0,0,0,0 | |||
|short_description=p10@LSP1 | |||
}} |
Revision as of 06:04, 11 January 2014
Short description: | p10@LSP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_LSP1_5end |
Coexpression cluster: | C3126_Anulus_Myoblast_tenocyte_Mesenchymal_Nucleus_immature_Chondrocyte |
Association with transcript: | 0bp_to_ENST00000417766_5end |
EntrezGene: | LSP1 |
HGNC: | 6707 |
UniProt: | E9PBD8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 3.02e-22 | 9 |
carbohydrate secreting cell | 3.02e-22 | 9 |
chondroblast | 1.33e-17 | 6 |
chondrocyte | 1.33e-17 | 6 |
skeletal muscle myoblast | 6.28e-17 | 4 |
fibrocyte | 1.20e-13 | 3 |
tendon cell | 1.20e-13 | 3 |
stromal cell | 2.95e-13 | 28 |
extracellular matrix secreting cell | 6.10e-13 | 15 |
nucleus pulposus cell of intervertebral disc | 7.70e-13 | 3 |
annulus pulposus cell | 4.65e-10 | 2 |
mesenchymal stem cell of the bone marrow | 9.27e-07 | 6 |
bone marrow cell | 9.99e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
articulation | 4.04e-25 | 8 |
skeletal joint | 4.04e-25 | 8 |
articular system | 4.04e-25 | 8 |
intervertebral cartilage | 3.86e-21 | 5 |
symphysis | 3.86e-21 | 5 |
nonsynovial joint | 3.86e-21 | 5 |
fibrous joint | 3.86e-21 | 5 |
cartilaginous joint | 3.86e-21 | 5 |
developing mesenchymal condensation | 3.86e-21 | 5 |
pre-cartilage condensation | 3.86e-21 | 5 |
cartilaginous condensation | 3.86e-21 | 5 |
cartilage element | 3.86e-21 | 5 |
post-cranial axial skeletal system | 3.86e-21 | 5 |
vertebral column | 3.86e-21 | 5 |
intervertebral disk | 3.86e-21 | 5 |
intervertebral joint | 3.86e-21 | 5 |
dense regular connective tissue | 1.20e-13 | 3 |
tendon | 1.20e-13 | 3 |
regular connective tissue | 1.20e-13 | 3 |
nucleus pulposus | 7.70e-13 | 3 |
axial mesoderm | 7.70e-13 | 3 |
notochord | 7.70e-13 | 3 |
chordamesoderm | 7.70e-13 | 3 |
annulus fibrosus | 4.65e-10 | 2 |
fibrocartilage | 4.65e-10 | 2 |
annulus fibrosus disci intervertebralis | 4.65e-10 | 2 |
cartilage tissue | 5.88e-07 | 3 |
skeletal tissue | 5.88e-07 | 3 |