FFCP PHASE1:Hg19::chr15:83478347..83478368,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=123720 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30493 | |||
|TSSclassifier=strong | |||
|UniProt=Q8TF30 | |||
|association_with_transcript=-11bp_to_ENST00000286760_5end | |||
|description=CAGE_peak_3_at_WHAMM_5end | |||
|id=chr15:83478347..83478368,+ | |||
|ontology_enrichment_celltype=CL:0000791!3.22e-10!18;CL:0000789!3.22e-10!18;CL:0002420!3.22e-10!18;CL:0002419!3.22e-10!18;CL:0000790!3.22e-10!18;CL:0000625!7.39e-08!11;CL:0000838!1.69e-07!52;CL:0000542!4.99e-07!53;CL:0000051!4.99e-07!53 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.16e-11;18!CL:0000789;1.16e-11;18!CL:0002419;1.16e-11;18!CL:0000625;8.88e-09;11!CL:0000084;1.99e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.14e-11,18;CL:0000789,1.14e-11,18;CL:0002420,1.14e-11,18;CL:0002419,1.14e-11,18;CL:0000790,1.14e-11,18;CL:0000838,3.92e-09,52;CL:0000625,1.00e-08,11;CL:0000542,1.14e-08,53;CL:0000051,1.14e-08,53;CL:0000084,1.82e-08,25;CL:0000827,1.82e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;1.16e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.97e-11!115;UBERON:0002616!1.28e-08!59;UBERON:0001049!1.60e-08!57;UBERON:0005068!1.60e-08!57;UBERON:0006241!1.60e-08!57;UBERON:0007135!1.60e-08!57;UBERON:0003075!4.80e-08!86;UBERON:0007284!4.80e-08!86;UBERON:0002346!6.45e-08!90;UBERON:0002780!9.25e-08!41;UBERON:0001890!9.25e-08!41;UBERON:0006240!9.25e-08!41;UBERON:0000955!1.64e-07!69;UBERON:0006238!1.64e-07!69;UBERON:0001869!1.66e-07!32;UBERON:0003080!1.91e-07!42;UBERON:0001893!6.09e-07!34;UBERON:0000153!6.99e-07!129;UBERON:0007811!6.99e-07!129;UBERON:0002020!8.99e-07!34;UBERON:0003528!8.99e-07!34 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.51e-11,114;UBERON:0000073,6.49e-11,53;UBERON:0002616,6.49e-11,53;UBERON:0001049,4.69e-10,56;UBERON:0005068,4.69e-10,56;UBERON:0006241,4.69e-10,56;UBERON:0007135,4.69e-10,56;UBERON:0000955,1.01e-08,68;UBERON:0006238,1.01e-08,68;UBERON:0002780,1.15e-08,41;UBERON:0001890,1.15e-08,41;UBERON:0003080,1.15e-08,41;UBERON:0006240,1.15e-08,41;UBERON:0003075,5.21e-08,82;UBERON:0007284,5.21e-08,82;UBERON:0001869,5.57e-08,32;UBERON:0002346,5.61e-08,86;UBERON:0001893,1.91e-07,34;UBERON:0003528,2.94e-07,34;UBERON:0002020,2.94e-07,34;UBERON:0002791,4.31e-07,32;UBERON:0001017,6.21e-07,81;UBERON:0001950,6.75e-07,20 | |||
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| |||
|short_description=p3@WHAMM | |||
}} |
Revision as of 00:55, 12 January 2014
Short description: | p3@WHAMM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_WHAMM_5end |
Coexpression cluster: | NA |
Association with transcript: | -11bp_to_ENST00000286760_5end |
EntrezGene: | WHAMM |
HGNC: | 30493 |
UniProt: | Q8TF30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.14e-11 | 18 |
alpha-beta T cell | 1.14e-11 | 18 |
immature T cell | 1.14e-11 | 18 |
mature T cell | 1.14e-11 | 18 |
immature alpha-beta T cell | 1.14e-11 | 18 |
lymphoid lineage restricted progenitor cell | 3.92e-09 | 52 |
CD8-positive, alpha-beta T cell | 1.00e-08 | 11 |
lymphocyte | 1.14e-08 | 53 |
common lymphoid progenitor | 1.14e-08 | 53 |
T cell | 1.82e-08 | 25 |
pro-T cell | 1.82e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.51e-11 | 114 |
regional part of nervous system | 6.49e-11 | 53 |
regional part of brain | 6.49e-11 | 53 |
neural tube | 4.69e-10 | 56 |
neural rod | 4.69e-10 | 56 |
future spinal cord | 4.69e-10 | 56 |
neural keel | 4.69e-10 | 56 |
brain | 1.01e-08 | 68 |
future brain | 1.01e-08 | 68 |
regional part of forebrain | 1.15e-08 | 41 |
forebrain | 1.15e-08 | 41 |
anterior neural tube | 1.15e-08 | 41 |
future forebrain | 1.15e-08 | 41 |
neural plate | 5.21e-08 | 82 |
presumptive neural plate | 5.21e-08 | 82 |
cerebral hemisphere | 5.57e-08 | 32 |
neurectoderm | 5.61e-08 | 86 |
telencephalon | 1.91e-07 | 34 |
brain grey matter | 2.94e-07 | 34 |
gray matter | 2.94e-07 | 34 |
regional part of telencephalon | 4.31e-07 | 32 |
central nervous system | 6.21e-07 | 81 |
neocortex | 6.75e-07 | 20 |