FFCP PHASE1:Hg19::chr2:20425208..20425273,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6382 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10658 | |||
|TSSclassifier=strong | |||
|UniProt=P18827 | |||
|association_with_transcript=-14bp_to_ENST00000381150,NM_001006946,uc002rdp.1_5end | |||
|coexpression_cluster_id=C572 | |||
|description=CAGE_peak_5_at_SDC1_5end | |||
|id=chr2:20425208..20425273,- | |||
|ontology_enrichment_celltype=CL:0000066!2.83e-36!254;CL:0000223!8.08e-18!59;CL:0002076!8.17e-17!43;CL:0002321!2.60e-10!248;CL:0000220!3.55e-10!246;CL:0002368!4.43e-08!13;CL:0002251!2.21e-07!21;CL:0002159!6.53e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.13e-14;42!CL:0002368;2.45e-09;13!CL:0002251;4.76e-08;20!CL:0002159;5.96e-08;14!CL:0002202;5.71e-07;9!CL:0002632;5.71e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.68e-34,253;CL:0002076,5.90e-19,42;CL:0000223,8.58e-19,58;CL:0002368,3.41e-09,13;CL:0002159,5.37e-08,14;CL:0002251,6.10e-08,20;CL:0002321,2.10e-07,250;CL:0002202,8.38e-07,9;CL:0002632,8.38e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;1.09e-10;58!UBERON:0008947;2.60e-08;29 | |||
|ontology_enrichment_disease=DOID:305!1.78e-18!106;DOID:0050687!3.94e-16!143;DOID:299!5.35e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.91e-07;25!DOID:1749;5.22e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.83e-16,106;DOID:0050687,3.13e-14,143;DOID:299,2.74e-07,25;DOID:1749,3.21e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.00e-29!169;UBERON:0000925!9.00e-29!169;UBERON:0006595!9.00e-29!169;UBERON:0001007!1.07e-22!155;UBERON:0001555!1.07e-22!155;UBERON:0007026!1.07e-22!155;UBERON:0004921!3.82e-20!129;UBERON:0004185!3.82e-20!129;UBERON:0000077!8.03e-20!130;UBERON:0000481!7.15e-18!347;UBERON:0000475!1.98e-17!365;UBERON:0000466!4.18e-17!126;UBERON:0003104!6.81e-17!238;UBERON:0009142!6.81e-17!238;UBERON:0001041!1.01e-15!98;UBERON:0001004!4.17e-15!72;UBERON:0000464!4.58e-15!104;UBERON:0005177!1.67e-14!107;UBERON:0000062!2.13e-13!511;UBERON:0000064!2.93e-13!219;UBERON:0009569!4.69e-13!113;UBERON:0000065!1.18e-12!53;UBERON:0005911!4.60e-12!82;UBERON:0000468!6.71e-12!659;UBERON:0002100!7.39e-12!216;UBERON:0000480!2.71e-11!626;UBERON:0008947!3.58e-11!38;UBERON:0003258!3.58e-11!38;UBERON:0000467!4.50e-11!625;UBERON:0001048!1.59e-10!168;UBERON:0005178!2.01e-10!34;UBERON:0002224!2.01e-10!34;UBERON:0001008!5.85e-10!45;UBERON:0006554!7.54e-10!44;UBERON:0000072!9.75e-10!46;UBERON:0005181!1.27e-09!35;UBERON:0000922!1.39e-09!612;UBERON:0005153!2.62e-09!37;UBERON:0002050!8.52e-09!605;UBERON:0005423!8.52e-09!605;UBERON:0000923!1.01e-08!604;UBERON:0005291!1.01e-08!604;UBERON:0006598!1.01e-08!604;UBERON:0002532!1.01e-08!604;UBERON:0000063!2.79e-08!97;UBERON:0005172!5.20e-08!55;UBERON:0005173!5.20e-08!55;UBERON:0000058!8.75e-08!26;UBERON:0003064!1.30e-07!37;UBERON:0005157!2.17e-07!51;UBERON:0005631!2.68e-07!14;UBERON:0000158!2.68e-07!14;UBERON:0003100!3.28e-07!41;UBERON:0000915!5.00e-07!52;UBERON:0000119!5.10e-07!312;UBERON:0002417!5.69e-07!61;UBERON:0000916!5.69e-07!61;UBERON:0005156!7.65e-07!59;UBERON:0000990!7.65e-07!59;UBERON:0002553!8.11e-07!70;UBERON:0002048!8.57e-07!22;UBERON:0000117!8.57e-07!22;UBERON:0000171!8.57e-07!22;UBERON:0000170!8.57e-07!22;UBERON:0005597!8.57e-07!22;UBERON:0000118!8.57e-07!22;UBERON:0000483!9.65e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;2.36e-10;44!UBERON:0005178;8.80e-10;34!UBERON:0002224;8.80e-10;34!UBERON:0001004;2.20e-09;65!UBERON:0005181;2.86e-09;35!UBERON:0000072;5.02e-09;37!UBERON:0004921;4.76e-08;33!UBERON:0006554;6.40e-08;30!UBERON:0001008;6.40e-08;30!UBERON:0004807;6.92e-08;22!UBERON:0002048;2.14e-07;22!UBERON:0000117;2.14e-07;22!UBERON:0000171;2.14e-07;22!UBERON:0000170;2.14e-07;22!UBERON:0005911;2.75e-07;36!UBERON:0007196;7.11e-07;15!UBERON:0001558;7.11e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.19e-27,160;UBERON:0000925,1.19e-27,160;UBERON:0006595,1.19e-27,160;UBERON:0001007,1.20e-21,145;UBERON:0001555,1.20e-21,145;UBERON:0007026,1.20e-21,145;UBERON:0004921,2.39e-20,118;UBERON:0001041,2.15e-16,87;UBERON:0001004,4.33e-16,74;UBERON:0005177,1.99e-14,101;UBERON:0000065,3.88e-13,54;UBERON:0008947,2.34e-12,38;UBERON:0003258,2.34e-12,38;UBERON:0005911,1.52e-11,82;UBERON:0009569,2.19e-11,112;UBERON:0005178,8.36e-11,34;UBERON:0002224,8.36e-11,34;UBERON:0001008,1.08e-10,48;UBERON:0006554,1.47e-10,47;UBERON:0005181,3.75e-10,35;UBERON:0000072,7.39e-10,47;UBERON:0001048,2.27e-09,160;UBERON:0005153,3.13e-09,37;UBERON:0002100,5.54e-09,199;UBERON:0005631,2.79e-08,14;UBERON:0000158,2.79e-08,14;UBERON:0005157,2.38e-07,47;UBERON:0000915,2.77e-07,52;UBERON:0002048,2.96e-07,22;UBERON:0000117,2.96e-07,22;UBERON:0000171,2.96e-07,22;UBERON:0000170,2.96e-07,22;UBERON:0005597,2.96e-07,22;UBERON:0000118,2.96e-07,22;UBERON:0003102,4.59e-07,99 | |||
|phase1_expression=0,0.428201047781966,0,0,1.34088328328186,0.872338524100369,0,0,0.261185628199839,7.61775203154677,25.8186432149798,23.3732268179284,22.4201931494186,0.123766352960047,0,1.34465029290355,4.21886169616784,2.19093027116212,1.95173119516203,2.58554221961255,4.08001382488506,2.82109249330279,0.286235987131057,2.6006140763848,1.50651167513763,0.993374274723366,1.47781061009902,1.49550484495991,0,0,0.154816123316076,12.871897142705,22.2892379895905,16.6389304575054,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,0,0,0.724232594804119,3.1811437882044,2.43317435151318,1.22895262313288,2.21729397462564,1.49319135678314,3.20898734969396,26.229260757063,18.168437696437,0,0.174129737299267,0,0,0,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0,0,0.208994966536811,0.258416759169329,0,0,0.402829317109147,0,0.488124115096339,0.367663080345869,0,0,0,0.112611480483322,0,0.949265659568129,0.549605231791222,0,0,20.0603263985566,0,1.13967460498122,0.132409180813219,2.58152958673932,1.77334191099179,1.12135520028461,1.06748995729705,1.72667283892012,0,0,0,0.302714855289863,0,0.937285727335186,0.312160076830321,1.71141546463335,0.597794722207204,0.704606991862589,0,0.702254033511242,0,1.35117749042945,0,0,0.494533858557114,3.64064544775211,0,0.673344455816265,1.25118519871964,0.554128230968366,0.877955241761676,0.30648779579902,0.300476117813194,0.226864366320042,2.51145489964407,0.213557388818567,1.27159140695737,1.50045548042201,0.721367704669072,0.772921620136887,1.67505170698431,2.70042131586026,2.14361411354637,1.51460264546469,0.368199594569197,1.45481451136931,4.26011511019937,1.0075209822764,1.86516651541536,13.5282597214308,12.2735754265876,12.6194021971162,1.21973706129595,1.59035721985782,0.929551542956147,1.7622379352613,1.00928340350251,0.72995471815166,0,1.92972281457866,1.38134921352481,0,1.44375896333917,2.12952240071719,3.54027849164014,5.06123162755312,3.30881918197182,3.4860711054785,3.32178866755535,2.83145747136345,1.96221465125346,4.23221872641029,0,1.40241773803446,1.6462960453256,0,10.1404027857465,9.82827216677626,6.49868897349544,0,3.44367627920718,1.54411029268673,16.5722930967025,17.9842805212191,16.888867365154,11.1106134190236,0.325808305310325,0,2.88662684050547,2.31860809950154,0.821860859650752,0,0,0,5.53143078571493,8.58486162094873,0,0.468008530278475,0.297262324577456,14.0600750980165,11.2548025893236,7.79763034833126,9.67232045190762,13.6597951101562,24.9198741457387,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0.253991577168676,0,0,0,0.308482478109971,0.901029173531752,1.42913216315289,3.1396703616701,1.30788020649984,1.68678057388185,0.904902010304444,0,1.690605505112,2.12750493267896,1.04007436911366,0.514414748524284,0,0.799266537048298,0.142977993658148,2.71310802695722,0,0,0,0.791951872933429,0.301439377059586,0,0.799783929456456,0,0,2.10833939483032,0.479249710983165,1.14861935834114,2.85273810081437,0.579125226670317,0.410952645100767,1.25342674267927,0,0,0,0,0.76228387266739,0,0,2.51274398001523,0,0,0,0,0.12269149171914,0.500170521059677,0.271265023699736,1.24782516918484,1.42743191037729,2.20783381047509,1.52283839490527,0,2.27407504055985,1.03473071292505,1.32845119707087,0.737476674166813,1.99832313276591,1.17480694477644,0.686286847621712,0,0,0,13.9438682865279,24.9653159265746,20.5625399464183,1.48864684691266,0.61384789315225,0.280660094433074,0.512556597022804,1.53512174720011,0.965123526861645,0,2.7757744884478,4.08391968220192,4.27061211271807,5.19254429183621,2.44041794765914,2.90062679019893,13.0329205697135,29.9263214041663,0.34444334449382,0.182091168006717,0.524497659837696,9.47519187105565,3.61972084390749,8.62784746094541,4.38417673959782,3.79985864014353,1.13733384070897,0.850468526382578,0.863663664408557,3.08454505380579,3.25135725052623,7.02365683396795,8.41091701048626,14.959368160717,6.49236788694317,0,0,1.53870075069834,0.656029291399411,0.650756789328606,2.98818933778395,0.640986253728404,0.660075999364704,6.89118645595407,11.7010844286574,1.6068392984416,2.12675580242668,0,0,0.275673144969061,0.322260734604821,0.290033387828457,1.02271952899321,0.801288320820636,10.0823798370197,10.1860735703506,3.82838137483752,16.4887182794546,1.39453664789186,1.88887408098384,1.3940745403212,1.23213432070436,2.66153015158511,1.73986598415015,1.66791797193528,0.286249773483982,0.744316738719335,0.632758849437452,1.71567174531442,3.07077349573601,0.42793898803392,2.22742273548156,0.78494864019923,1.97859703341646,0.54907405947211,1.29593642580255,1.2130948894399,0,0.842516912477962,2.92580243453754,0,0,0.136499911407986,0.565621727814851,3.39024349860728,2.75682671773062,0,0.438450885253763,1.15755106853338,1.31178950409327,0.202910376962704,1.54911749049875,1.40847801266121,1.29070216983646,0.785992328104969,0,0.709522128141196,0,0.329294892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| |||
|short_description=p5@SDC1 | |||
}} |
Revision as of 01:56, 21 January 2014
Short description: | p5@SDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SDC1_5end |
Coexpression cluster: | C572_Urothelial_Prostate_Keratinocyte_Corneal_Mammary_Bronchial_Gingival |
Association with transcript: | -14bp_to_ENST00000381150, NM_001006946, uc002rdp.1_5end |
EntrezGene: | SDC1 |
HGNC: | 10658 |
UniProt: | P18827 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.68e-34 | 253 |
endo-epithelial cell | 5.90e-19 | 42 |
endodermal cell | 8.58e-19 | 58 |
respiratory epithelial cell | 3.41e-09 | 13 |
general ecto-epithelial cell | 5.37e-08 | 14 |
epithelial cell of alimentary canal | 6.10e-08 | 20 |
embryonic cell | 2.10e-07 | 250 |
epithelial cell of tracheobronchial tree | 8.38e-07 | 9 |
epithelial cell of lower respiratory tract | 8.38e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.19e-27 | 160 |
endoderm | 1.19e-27 | 160 |
presumptive endoderm | 1.19e-27 | 160 |
digestive system | 1.20e-21 | 145 |
digestive tract | 1.20e-21 | 145 |
primitive gut | 1.20e-21 | 145 |
subdivision of digestive tract | 2.39e-20 | 118 |
foregut | 2.15e-16 | 87 |
respiratory system | 4.33e-16 | 74 |
trunk region element | 1.99e-14 | 101 |
respiratory tract | 3.88e-13 | 54 |
respiratory primordium | 2.34e-12 | 38 |
endoderm of foregut | 2.34e-12 | 38 |
endo-epithelium | 1.52e-11 | 82 |
subdivision of trunk | 2.19e-11 | 112 |
thoracic cavity element | 8.36e-11 | 34 |
thoracic cavity | 8.36e-11 | 34 |
renal system | 1.08e-10 | 48 |
urinary system structure | 1.47e-10 | 47 |
thoracic segment organ | 3.75e-10 | 35 |
segment of respiratory tract | 7.39e-10 | 47 |
primordium | 2.27e-09 | 160 |
epithelial bud | 3.13e-09 | 37 |
trunk | 5.54e-09 | 199 |
extraembryonic membrane | 2.79e-08 | 14 |
membranous layer | 2.79e-08 | 14 |
epithelial fold | 2.38e-07 | 47 |
thoracic segment of trunk | 2.77e-07 | 52 |
lung | 2.96e-07 | 22 |
respiratory tube | 2.96e-07 | 22 |
respiration organ | 2.96e-07 | 22 |
pair of lungs | 2.96e-07 | 22 |
lung primordium | 2.96e-07 | 22 |
lung bud | 2.96e-07 | 22 |
surface structure | 4.59e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.83e-16 | 106 |
cell type cancer | 3.13e-14 | 143 |
adenocarcinoma | 2.74e-07 | 25 |
squamous cell carcinoma | 3.21e-07 | 14 |