FFCP PHASE1:Hg19::chr3:142166870..142166889,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54464 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30654 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000465074_5end | |||
|description=CAGE_peak_1_at_XRN1_5end | |||
|id=chr3:142166870..142166889,- | |||
|ontology_enrichment_celltype=CL:0000738!8.48e-19!140;CL:0002031!1.54e-15!124;CL:0000037!8.89e-14!172;CL:0000566!8.89e-14!172;CL:0002057!1.58e-13!42;CL:0002087!1.65e-13!119;CL:0000766!6.32e-13!76;CL:0002032!1.48e-12!165;CL:0000837!1.48e-12!165;CL:0000839!2.73e-12!70;CL:0000557!5.12e-12!71;CL:0000988!2.27e-11!182;CL:0000860!2.65e-11!45;CL:0002009!2.48e-10!65;CL:0002194!6.24e-10!63;CL:0000576!6.24e-10!63;CL:0000040!6.24e-10!63;CL:0000559!6.24e-10!63;CL:0000763!3.75e-09!112;CL:0000049!3.75e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.67e-12;33!CL:0002057;2.67e-12;33!CL:0000473;2.65e-09;39!CL:0000234;2.65e-09;39!CL:0000576;1.78e-08;48!CL:0000766;5.15e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.87e-20,136;CL:0002031,6.17e-17,120;CL:0000037,8.05e-15,168;CL:0002087,8.24e-15,115;CL:0000766,1.20e-14,72;CL:0000839,4.76e-14,66;CL:0000557,9.96e-14,67;CL:0002032,1.46e-13,161;CL:0000837,1.46e-13,161;CL:0000860,1.58e-13,42;CL:0002057,1.58e-13,42;CL:0000988,1.05e-12,177;CL:0000473,2.54e-12,48;CL:0000234,2.54e-12,48;CL:0002009,5.82e-12,61;CL:0002194,1.51e-11,59;CL:0000576,1.51e-11,59;CL:0000040,1.51e-11,59;CL:0000559,1.51e-11,59;CL:0000763,3.50e-10,108;CL:0000049,3.50e-10,108 | |||
|ontology_enrichment_development_v019=CL:0002057;8.91e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.13e-21!115;UBERON:0002390!1.45e-14!102;UBERON:0003061!1.45e-14!102;UBERON:0002193!3.75e-12!112;UBERON:0001474!2.25e-10!86;UBERON:0002371!2.75e-10!80;UBERON:0004765!1.91e-09!101;UBERON:0001434!1.91e-09!101;UBERON:0001049!1.44e-08!57;UBERON:0005068!1.44e-08!57;UBERON:0006241!1.44e-08!57;UBERON:0007135!1.44e-08!57;UBERON:0002780!8.08e-08!41;UBERON:0001890!8.08e-08!41;UBERON:0006240!8.08e-08!41;UBERON:0003080!1.27e-07!42;UBERON:0000955!1.84e-07!69;UBERON:0006238!1.84e-07!69;UBERON:0002616!2.52e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.26e-21,114;UBERON:0002390,4.31e-16,98;UBERON:0003061,4.31e-16,98;UBERON:0002193,2.14e-13,108;UBERON:0001474,1.02e-11,82;UBERON:0002371,1.09e-11,76;UBERON:0004765,7.62e-11,90;UBERON:0001434,1.38e-10,100;UBERON:0002405,2.69e-10,93;UBERON:0001049,1.01e-08,56;UBERON:0005068,1.01e-08,56;UBERON:0006241,1.01e-08,56;UBERON:0007135,1.01e-08,56;UBERON:0000073,3.12e-08,53;UBERON:0002616,3.12e-08,53;UBERON:0002780,8.08e-08,41;UBERON:0001890,8.08e-08,41;UBERON:0003080,8.08e-08,41;UBERON:0006240,8.08e-08,41;UBERON:0000955,1.42e-07,68;UBERON:0006238,1.42e-07,68 | |||
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| |||
|short_description=p1@XRN1 | |||
}} |
Revision as of 21:44, 21 January 2014
Short description: | p1@XRN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_XRN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000465074_5end |
EntrezGene: | XRN1 |
HGNC: | 30654 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.87e-20 | 136 |
hematopoietic lineage restricted progenitor cell | 6.17e-17 | 120 |
hematopoietic stem cell | 8.05e-15 | 168 |
nongranular leukocyte | 8.24e-15 | 115 |
myeloid leukocyte | 1.20e-14 | 72 |
myeloid lineage restricted progenitor cell | 4.76e-14 | 66 |
granulocyte monocyte progenitor cell | 9.96e-14 | 67 |
hematopoietic oligopotent progenitor cell | 1.46e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.46e-13 | 161 |
classical monocyte | 1.58e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.58e-13 | 42 |
hematopoietic cell | 1.05e-12 | 177 |
defensive cell | 2.54e-12 | 48 |
phagocyte | 2.54e-12 | 48 |
macrophage dendritic cell progenitor | 5.82e-12 | 61 |
monopoietic cell | 1.51e-11 | 59 |
monocyte | 1.51e-11 | 59 |
monoblast | 1.51e-11 | 59 |
promonocyte | 1.51e-11 | 59 |
myeloid cell | 3.50e-10 | 108 |
common myeloid progenitor | 3.50e-10 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.26e-21 | 114 |
hematopoietic system | 4.31e-16 | 98 |
blood island | 4.31e-16 | 98 |
hemolymphoid system | 2.14e-13 | 108 |
bone element | 1.02e-11 | 82 |
bone marrow | 1.09e-11 | 76 |
skeletal element | 7.62e-11 | 90 |
skeletal system | 1.38e-10 | 100 |
immune system | 2.69e-10 | 93 |
neural tube | 1.01e-08 | 56 |
neural rod | 1.01e-08 | 56 |
future spinal cord | 1.01e-08 | 56 |
neural keel | 1.01e-08 | 56 |
regional part of nervous system | 3.12e-08 | 53 |
regional part of brain | 3.12e-08 | 53 |
regional part of forebrain | 8.08e-08 | 41 |
forebrain | 8.08e-08 | 41 |
anterior neural tube | 8.08e-08 | 41 |
future forebrain | 8.08e-08 | 41 |
brain | 1.42e-07 | 68 |
future brain | 1.42e-07 | 68 |