FFCP PHASE1:Hg19::chr5:138629417..138629446,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9782 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6912 | |||
|TSSclassifier=strong | |||
|UniProt=Q68E03,B7ZAV5,D6REM6,D6RBK5,P43243 | |||
|association_with_transcript=0bp_to_ENST00000337359,ENST00000503811,ENST00000507860,ENST00000509918,ENST00000510056,ENST00000511249,ENST00000511978,NM_001194955,NM_001194956_5end | |||
|coexpression_cluster_id=C2804 | |||
|description=CAGE_peak_1_at_MATR3_5end | |||
|id=chr5:138629417..138629446,+ | |||
|ontology_enrichment_celltype=CL:0000542!4.30e-15!53;CL:0000051!4.30e-15!53;CL:0000838!1.05e-14!52;CL:0000738!1.24e-11!140;CL:0000037!1.05e-10!172;CL:0000566!1.05e-10!172;CL:0002031!1.27e-10!124;CL:0002087!1.02e-09!119;CL:0000988!2.35e-09!182;CL:0002032!4.58e-09!165;CL:0000837!4.58e-09!165;CL:0000791!5.04e-08!18;CL:0000789!5.04e-08!18;CL:0002420!5.04e-08!18;CL:0002419!5.04e-08!18;CL:0000790!5.04e-08!18;CL:0000084!7.68e-08!25;CL:0000827!7.68e-08!25;CL:0000945!4.26e-07!24;CL:0000826!4.26e-07!24;CL:0000236!6.91e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000542;4.10e-09;53!CL:0000791;4.97e-08;18!CL:0000789;4.97e-08;18!CL:0002419;4.97e-08;18!CL:0000084;7.51e-08;25!CL:0000945;4.30e-07;24!CL:0000236;7.18e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.30e-15,53;CL:0000051,4.30e-15,53;CL:0000838,1.05e-14,52;CL:0000738,1.31e-11,136;CL:0000037,1.22e-10,168;CL:0002031,1.30e-10,120;CL:0002087,1.06e-09,115;CL:0000988,1.17e-09,177;CL:0002032,5.37e-09,161;CL:0000837,5.37e-09,161;CL:0000791,5.04e-08,18;CL:0000789,5.04e-08,18;CL:0002420,5.04e-08,18;CL:0002419,5.04e-08,18;CL:0000790,5.04e-08,18;CL:0000084,7.68e-08,25;CL:0000827,7.68e-08,25;CL:0000945,4.26e-07,24;CL:0000826,4.26e-07,24;CL:0000236,6.91e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000051;4.10e-09;53!CL:0000790;4.97e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.16e-11!115;UBERON:0001017!5.69e-10!82;UBERON:0000073!1.69e-09!94;UBERON:0001016!1.69e-09!94;UBERON:0005743!2.54e-09!86;UBERON:0001049!1.29e-07!57;UBERON:0005068!1.29e-07!57;UBERON:0006241!1.29e-07!57;UBERON:0007135!1.29e-07!57;UBERON:0003080!1.31e-07!42;UBERON:0002780!2.60e-07!41;UBERON:0001890!2.60e-07!41;UBERON:0006240!2.60e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.14e-11,114;UBERON:0001016,7.78e-10,89;UBERON:0001017,1.08e-09,81;UBERON:0001049,2.43e-07,56;UBERON:0005068,2.43e-07,56;UBERON:0006241,2.43e-07,56;UBERON:0007135,2.43e-07,56;UBERON:0002780,2.60e-07,41;UBERON:0001890,2.60e-07,41;UBERON:0003080,2.60e-07,41;UBERON:0006240,2.60e-07,41;UBERON:0000073,8.16e-07,53;UBERON:0002616,8.16e-07,53 | |||
|phase1_expression=68.856105743541,54.5956335922007,89.6470010050377,61.0447119954096,72.4076972972206,61.9360352111262,35.4619829435635,56.223068734988,44.1403711657727,16.2184398090996,13.2582221914761,41.2854193326026,11.8695140202804,86.3889143661125,65.2852830183994,68.5771649380811,62.6802309144936,69.3794585868005,48.7932798790507,48.3865758241776,21.8280739631351,18.1803738457291,154.28119706364,92.1164880740511,99.5553131986786,106.367460801148,105.74555921153,100.98593242545,41.6966133459838,144.319853684552,119.827679446643,63.440064489046,17.7711492079168,27.7315507625091,115.271194463489,101.935339693481,136.230603851369,79.2213434200585,90.2450013615638,86.5873374156249,77.4747540870138,109.799952780434,88.348419698526,78.9512436573036,85.0220873299821,75.4436430294108,58.3396882633268,76.8883950600814,108.087523442391,52.0723230103092,67.8825872302117,112.329059197078,63.0884595748012,85.203978233065,104.278394677643,71.5320890261898,108.343741572965,109.215613440311,72.235798599533,109.115869205872,88.2285233602677,56.4045723319285,79.3865357334095,70.7533085884272,78.9369129069749,87.9447098271267,92.1776928513451,70.8521236024016,66.2283306393656,102.947512390225,64.1723472791371,126.687506779722,116.141696190805,116.40166275788,92.2702661848289,96.6526355793613,80.4272999008905,98.3658648111866,95.9531752581568,59.2826506981797,90.507088125586,105.579880875958,135.517108235218,119.604355866407,124.531295540898,121.191383208888,153.351663034793,133.34256606944,130.225839938618,124.981041844133,148.564584937566,169.711547728201,149.086558968839,154.64045443746,166.471043205516,150.392312406569,211.069583332143,126.156454842482,151.939507760637,116.528987287303,157.094532517391,140.613998303216,134.430442601459,124.556890797624,173.228273595204,169.916497145637,159.503475757594,83.3874491414145,86.3594067797592,97.8405532391873,75.7199048733224,106.937338636234,154.662885378029,166.410395071802,132.760115232321,107.417256877293,123.013778446217,121.300488255368,206.970108071953,136.027431916389,123.70585623272,97.8965605781825,168.794708486183,199.915086623202,114.936268428158,140.88246496619,136.307247488894,193.340866752518,113.127202816424,141.927915805143,75.5801285573281,61.0337782330309,105.998063768287,136.623999601366,69.6859695783887,74.0165711889809,83.5050244403654,40.8773291054214,127.338398719999,69.17957200832,75.274411339009,70.7287007687648,8.74308691902101,16.6852999252993,58.7430782514977,79.9255494203637,44.5409167738198,174.813627615816,152.150646267514,196.872475704669,37.1685701775739,33.5491492091389,27.0769591253924,23.1776256188844,32.3014565881628,58.3250248912943,38.2460788762363,96.3894511701597,110.643307695567,128.532715301633,53.1734698584074,41.0546937087997,33.9246259991956,83.0918561581663,27.5448262279798,106.534575842907,42.4360514263461,38.6257378057795,30.6633274931766,37.9706263827252,34.9915330907078,76.4326421129167,81.4338554711483,10.4662572514208,73.0548768992118,79.6505918370207,190.271992828595,239.795414946008,73.0616867328616,63.3565688160807,44.8345782064761,43.166820973003,99.5875313279252,85.8106981083913,80.9136420411621,43.7422965893852,59.3461202214399,29.993143274726,41.5172902184326,31.9464220064892,51.5597947903714,109.448952735989,107.969253893544,117.838226823186,77.7827392481143,81.1934837430786,67.9883640136537,79.5961914378976,54.8932582998396,21.8438726865126,6.46756327634615,111.606843551546,82.3279860757524,97.2495045349482,68.0415312365299,50.5704863068382,35.0054677252371,88.0233741321763,272.313466975692,91.829677191984,83.7131009580269,213.664860412094,120.983669325927,267.430880567363,88.7777404701683,268.354368263613,113.514111012796,307.464337029331,93.7067968178607,170.05165177339,207.325602029703,112.137085327364,71.7241305473363,63.5828206907247,76.0961676448429,69.6935166795279,126.852654374779,141.409262799025,145.126234644028,107.600175105955,100.928340350251,132.12180398545,37.5478877591558,63.6808528810956,34.5337303381201,57.5816230759654,53.4190816435493,87.3104184294048,98.9592130758457,99.7785663717616,85.6984168130701,87.8054159692397,93.0100826915499,80.0897970471377,86.729887585403,93.8783062949193,24.3591300026134,12.6217596423101,18.9324045212444,19.1111324801205,48.1669132322957,51.1070152672366,63.8053099215916,106.392606958931,88.1827104354124,91.4456428891141,61.0211586871958,37.0925785750145,71.3755704122579,71.5708681075434,17.2678401814472,14.5590869939141,57.7325368101093,134.479269771089,101.206294431278,57.6022126566685,30.0940583174797,64.3059034552942,40.300424295923,35.1979326458898,73.6188848201318,71.1372966023283,45.3325044980621,36.556195254843,60.3055840233906,73.1559501770714,83.7372187271632,83.4119403535071,25.6866395040691,278.354729411208,132.865086925958,120.042978898107,144.408193323795,126.747403160085,119.43953916357,39.3448078325026,32.8208852188132,41.0573870454493,81.0280642502189,62.7716990893787,86.6054090870652,45.6373513285618,34.4408454378291,120.421465318,83.3802566637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| |||
|short_description=p1@MATR3 | |||
}} |
Revision as of 07:43, 22 January 2014
Short description: | p1@MATR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MATR3_5end |
Coexpression cluster: | C2804_parietal_Mast_Neurons_occipital_Neural_Fibroblast_pineal |
Association with transcript: | 0bp_to_ENST00000337359, ENST00000503811, ENST00000507860, ENST00000509918, ENST00000510056, ENST00000511249, ENST00000511978, NM_001194955, NM_001194956_5end |
EntrezGene: | MATR3 |
HGNC: | 6912 |
UniProt: | Q68E03B7ZAV5D6REM6D6RBK5P43243 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.30e-15 | 53 |
common lymphoid progenitor | 4.30e-15 | 53 |
lymphoid lineage restricted progenitor cell | 1.05e-14 | 52 |
leukocyte | 1.31e-11 | 136 |
hematopoietic stem cell | 1.22e-10 | 168 |
hematopoietic lineage restricted progenitor cell | 1.30e-10 | 120 |
nongranular leukocyte | 1.06e-09 | 115 |
hematopoietic cell | 1.17e-09 | 177 |
hematopoietic oligopotent progenitor cell | 5.37e-09 | 161 |
hematopoietic multipotent progenitor cell | 5.37e-09 | 161 |
mature alpha-beta T cell | 5.04e-08 | 18 |
alpha-beta T cell | 5.04e-08 | 18 |
immature T cell | 5.04e-08 | 18 |
mature T cell | 5.04e-08 | 18 |
immature alpha-beta T cell | 5.04e-08 | 18 |
T cell | 7.68e-08 | 25 |
pro-T cell | 7.68e-08 | 25 |
lymphocyte of B lineage | 4.26e-07 | 24 |
pro-B cell | 4.26e-07 | 24 |
B cell | 6.91e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.14e-11 | 114 |
nervous system | 7.78e-10 | 89 |
central nervous system | 1.08e-09 | 81 |
neural tube | 2.43e-07 | 56 |
neural rod | 2.43e-07 | 56 |
future spinal cord | 2.43e-07 | 56 |
neural keel | 2.43e-07 | 56 |
regional part of forebrain | 2.60e-07 | 41 |
forebrain | 2.60e-07 | 41 |
anterior neural tube | 2.60e-07 | 41 |
future forebrain | 2.60e-07 | 41 |
regional part of nervous system | 8.16e-07 | 53 |
regional part of brain | 8.16e-07 | 53 |