FFCP PHASE1:Hg19::chr6:83902933..83903005,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5238 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8907 | |||
|TSSclassifier=strong | |||
|UniProt=O95394,D6RC77,D6RCD1,D6RIS6,D6RF12 | |||
|association_with_transcript=0bp_to_ENST00000283977,ENST00000503094,ENST00000505470,ENST00000510258,ENST00000512866,ENST00000515333,uc003pjv.2,uc003pjw.2_5end | |||
|coexpression_cluster_id=C2721 | |||
|description=CAGE_peak_1_at_PGM3_5end | |||
|id=chr6:83902933..83903005,- | |||
|ontology_enrichment_celltype=CL:0000055!2.87e-24!180;CL:0000057!5.44e-14!75;CL:0000680!2.00e-13!57;CL:0000056!2.00e-13!57;CL:0000355!2.00e-13!57;CL:0000187!1.72e-12!54;CL:0000393!2.73e-12!60;CL:0000211!2.73e-12!60;CL:0000359!2.03e-11!32;CL:0000192!4.04e-11!42;CL:0000514!4.04e-11!42;CL:0002321!2.95e-10!248;CL:0000220!2.98e-10!246;CL:0000183!6.78e-09!59;CL:0002334!2.02e-07!12;CL:0002620!2.33e-07!23;CL:0000222!4.65e-07!119;CL:0002494!6.05e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.27e-10;32!CL:0000192;5.10e-08;43!CL:0002334;1.94e-07;12!CL:0002620;2.32e-07;23!CL:0000187;3.55e-07;55!CL:0000134;5.02e-07;55!CL:0002494;5.79e-07;16!CL:0000723;7.05e-07;61!CL:0000393;7.85e-07;61!CL:0000211;7.85e-07;61!CL:0000048;9.03e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.78e-14,76;CL:0000680,2.86e-13,58;CL:0000056,2.86e-13,58;CL:0000355,2.86e-13,58;CL:0000187,2.43e-12,55;CL:0000393,3.68e-12,61;CL:0000211,3.68e-12,61;CL:0000359,2.03e-11,32;CL:0000192,6.04e-11,43;CL:0000514,6.04e-11,43;CL:0002321,5.61e-10,250;CL:0002334,2.02e-07,12;CL:0002620,2.33e-07,23;CL:0002494,6.05e-07,16;CL:0000222,9.82e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;5.10e-08;43!CL:0000355;4.93e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!2.92e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.17e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.92e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.72e-15!83;UBERON:0002329!4.72e-15!83;UBERON:0003077!4.72e-15!83;UBERON:0003059!4.72e-15!83;UBERON:0007282!4.72e-15!83;UBERON:0009618!4.72e-15!83;UBERON:0007285!4.72e-15!83;UBERON:0004290!2.50e-12!70;UBERON:0005256!6.62e-12!143;UBERON:0001134!9.34e-12!61;UBERON:0002036!9.34e-12!61;UBERON:0003082!9.34e-12!61;UBERON:0000486!2.58e-11!82;UBERON:0002385!3.07e-11!63;UBERON:0001015!3.07e-11!63;UBERON:0000383!3.07e-11!63;UBERON:0000490!3.33e-11!138;UBERON:0000475!2.06e-10!365;UBERON:0002100!3.56e-10!216;UBERON:0001637!8.77e-09!42;UBERON:0003509!8.77e-09!42;UBERON:0004572!8.77e-09!42;UBERON:0004573!2.16e-08!33;UBERON:0004571!2.16e-08!33;UBERON:0004872!8.58e-08!84;UBERON:0000481!3.67e-07!347;UBERON:0003104!4.90e-07!238;UBERON:0009142!4.90e-07!238;UBERON:0003102!6.97e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.20e-07;33!UBERON:0004571;1.20e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.04e-12,73;UBERON:0002329,3.21e-12,71;UBERON:0003059,3.21e-12,71;UBERON:0007282,3.21e-12,71;UBERON:0004290,3.21e-12,71;UBERON:0009618,3.21e-12,71;UBERON:0005256,5.07e-12,122;UBERON:0003077,5.25e-12,72;UBERON:0007285,5.25e-12,72;UBERON:0000490,5.68e-12,148;UBERON:0001134,1.23e-11,62;UBERON:0002036,1.23e-11,62;UBERON:0003082,1.23e-11,62;UBERON:0000486,3.10e-11,83;UBERON:0002385,3.95e-11,64;UBERON:0001015,3.95e-11,64;UBERON:0000383,3.95e-11,64;UBERON:0003104,1.49e-10,160;UBERON:0009142,1.49e-10,160;UBERON:0007503,8.43e-09,78;UBERON:0001637,8.77e-09,42;UBERON:0003509,8.77e-09,42;UBERON:0004572,8.77e-09,42;UBERON:0004573,2.16e-08,33;UBERON:0004571,2.16e-08,33;UBERON:0002100,5.34e-08,199;UBERON:0003102,7.12e-08,99;UBERON:0004872,1.96e-07,83 | |||
|phase1_expression=56.5019759531431,40.0367979676139,72.8734269176171,47.0344502259713,36.2038486486103,60.1913581629254,30.3959853801973,42.9569513930245,14.1040239227913,10.0750913965619,0.697801167972428,13.1064823278103,10.2869121509097,40.3478310649752,34.4653270757032,62.5262386200151,57.2559801622778,57.6944971406025,51.2329438730032,9.11095829768231,3.67201244239655,5.32873026512749,43.7941060310517,29.1542525405243,42.4334121830433,20.0203123059632,19.5399402890871,19.4415629844788,4.32700704533794,12.2825407391108,6.03782880932696,18.3884244895785,7.8313538882345,32.5383528946773,11.0778096829831,12.9374001563554,6.75281010470149,12.7418943962332,9.02450013615638,8.24641308720237,13.6588439286354,14.5752149708541,12.363627246441,7.12451370019867,3.77875943688809,8.24785808038575,7.20530014407622,5.34518254428373,5.88442104700697,2.8769239232215,2.56160706529101,4.02019790810595,5.17118521104928,8.39130088658974,9.47985406160392,6.58848188399116,6.5497476013883,11.6856211911444,3.67300670845083,3.85114832491312,3.83602275479425,3.62836430205388,5.38551875578406,4.26224750532694,7.83564944297177,6.80862269629368,4.9825779919646,4.77372463987812,3.12889751052121,4.99534342821768,5.44859552370032,6.99727508376373,9.49387162322653,6.12640330304631,5.52771179909113,7.12839394728478,6.62738923764321,6.30742949934327,5.30394436100364,6.27028036230747,6.56425034756997,5.84525292046829,15.839662001519,12.0150494477669,11.5636203002262,20.9097809057589,13.6134635592244,16.66782075868,11.2377628373427,8.58648379081828,21.630092826159,14.0936925449025,11.0859236156316,10.5737062863221,25.2228853341691,11.5888997301034,19.6709770113833,11.7903228824749,10.6912779479745,11.5358681819568,21.1849473311834,18.4644644236546,15.5861382726329,10.0269411196656,12.3734481139432,9.96902525626295,14.6234086433108,5.63601806792971,8.71397628651184,7.5641436117691,7.46145048021791,10.1431080007268,17.201241326799,12.8419597483062,19.8617495229456,9.63129412929313,19.544245173698,9.96519591899627,12.1449452169361,12.4240511586398,7.81300144627702,6.65316431113862,15.5092372650106,16.2542996166111,11.2437653897111,12.5491943583329,9.03240796613151,23.9912024437432,19.523134292196,18.2478748892327,29.2568239576754,37.5592481434036,66.9999824060099,59.998899295838,31.584288370061,39.6879461952657,84.3003103874165,61.8026285284348,37.8139268656271,40.3547503381866,36.7149404197267,20.3017567021455,1.82147644146271,2.59549109949101,6.16640047943898,10.7960437125546,8.11043559165077,34.5811405242746,23.4517913419852,46.0607301648661,25.2428257355715,17.2046919021225,14.579901067519,20.9163938511884,20.1359729380755,23.3850335649057,27.587335582859,49.8744345196805,56.2110695045002,56.2330629444646,17.7244899528025,30.4108842287405,8.54217201418593,36.7663080345869,19.4434067491622,42.7745698480742,21.5548197721123,24.4366912648809,15.3316637465883,18.9853131913626,17.0377621855279,5.27121669744253,0,3.92484646928281,106.351997662798,89.1478802118641,135.984228695176,110.432098988293,63.8403087957043,53.8250496136615,73.6568070534964,58.2135414264497,75.0018595313437,61.0239344475687,60.4809041519797,22.09818443616,53.5843609766399,7.49828581868149,22.4755255317831,27.953119255678,26.9007624993242,40.0451640375238,37.8782689821428,48.034175892169,45.934688532351,35.0077804338539,23.9715812327776,49.8961200058462,30.4138323012625,4.55080680969013,2.15585442544872,57.4026148583366,32.5308151667107,61.2311695220044,32.9233215660628,48.1185839404461,30.0476117813194,83.9398155384156,105.66049542074,63.8536592567517,70.7852549872937,63.6193123698933,63.3773054816399,99.4492484576129,60.6740951640983,79.6624288178777,76.4880490515409,91.8858938248577,57.0709371582256,71.4475571139149,75.9720527985555,71.130981348714,53.0724653931826,50.8276043819471,78.0053904889787,34.7033560420695,26.9561890546406,23.5902987612244,31.0237827461614,27.4701795790732,18.6717429647965,21.533664185474,40.6768784057521,46.3133475498877,26.2456350569713,42.2574814509101,36.8158535651489,20.8219968070125,25.9620422720277,23.8600919584647,26.1396715375774,19.827029412409,22.3034381964431,25.4831172422711,23.9390187452922,25.7780595154082,5.16708818237254,1.40241773803446,10.7009242946164,14.7008711385542,45.6318125358591,40.2959158837827,33.67502468084,15.8926715789274,58.5424967465221,47.3527156423931,18.6575485194663,22.4803506515239,35.9893721233638,28.8875948894612,9.77424915930974,3.11980435583874,33.1962086658129,35.3587735173984,58.4695297294392,32.4824507462416,16.667478452758,28.7283769874243,11.0628615714299,20.6036678902769,15.0192373713312,28.0805118167085,15.9035343648939,66.5510221306117,81.9752785610435,62.8063680783772,38.5101647622248,29.3540277899102,11.5014803749563,90.6500357728536,6.16339038092582,10.7810620081201,9.94427678577034,11.9930311755061,22.922739839473,8.78573378784039,4.68869788840188,3.4214489204541,19.8457060917414,23.1264154539816,16.292106659943,16.0347450613866,14.8226423403315,56.8371715112363,103.158829174707,10.729693375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| |||
|short_description=p1@PGM3 | |||
}} |
Revision as of 12:50, 22 January 2014
Short description: | p1@PGM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PGM3_5end |
Coexpression cluster: | C2721_Preadipocyte_Smooth_Mast_Fibroblast_Mesenchymal_mesenchymal_Myoblast |
Association with transcript: | 0bp_to_ENST00000283977, ENST00000503094, ENST00000505470, ENST00000510258, ENST00000512866, ENST00000515333, uc003pjv.2, uc003pjw.2_5end |
EntrezGene: | PGM3 |
HGNC: | 8907 |
UniProt: | O95394D6RC77D6RCD1D6RIS6D6RF12 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.78e-14 | 76 |
muscle precursor cell | 2.86e-13 | 58 |
myoblast | 2.86e-13 | 58 |
multi-potent skeletal muscle stem cell | 2.86e-13 | 58 |
muscle cell | 2.43e-12 | 55 |
electrically responsive cell | 3.68e-12 | 61 |
electrically active cell | 3.68e-12 | 61 |
vascular associated smooth muscle cell | 2.03e-11 | 32 |
smooth muscle cell | 6.04e-11 | 43 |
smooth muscle myoblast | 6.04e-11 | 43 |
embryonic cell | 5.61e-10 | 250 |
preadipocyte | 2.02e-07 | 12 |
skin fibroblast | 2.33e-07 | 23 |
cardiocyte | 6.05e-07 | 16 |
mesodermal cell | 9.82e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.04e-12 | 73 |
somite | 3.21e-12 | 71 |
presomitic mesoderm | 3.21e-12 | 71 |
presumptive segmental plate | 3.21e-12 | 71 |
dermomyotome | 3.21e-12 | 71 |
trunk paraxial mesoderm | 3.21e-12 | 71 |
trunk mesenchyme | 5.07e-12 | 122 |
paraxial mesoderm | 5.25e-12 | 72 |
presumptive paraxial mesoderm | 5.25e-12 | 72 |
unilaminar epithelium | 5.68e-12 | 148 |
skeletal muscle tissue | 1.23e-11 | 62 |
striated muscle tissue | 1.23e-11 | 62 |
myotome | 1.23e-11 | 62 |
multilaminar epithelium | 3.10e-11 | 83 |
muscle tissue | 3.95e-11 | 64 |
musculature | 3.95e-11 | 64 |
musculature of body | 3.95e-11 | 64 |
mesenchyme | 1.49e-10 | 160 |
entire embryonic mesenchyme | 1.49e-10 | 160 |
epithelial vesicle | 8.43e-09 | 78 |
artery | 8.77e-09 | 42 |
arterial blood vessel | 8.77e-09 | 42 |
arterial system | 8.77e-09 | 42 |
systemic artery | 2.16e-08 | 33 |
systemic arterial system | 2.16e-08 | 33 |
trunk | 5.34e-08 | 199 |
surface structure | 7.12e-08 | 99 |
splanchnic layer of lateral plate mesoderm | 1.96e-07 | 83 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.92e-08 | 14 |