FFCP PHASE1:Hg19::chr7:11872060..11872076,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221981 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22207 | |||
|TSSclassifier=weak | |||
|UniProt=C9JL67,Q9UPZ6 | |||
|association_with_transcript=-236bp_to_ENST00000262042,ENST00000423059,NM_015204,uc003ssf.3_5end | |||
|description=CAGE_peak_5_at_THSD7A_5end | |||
|id=chr7:11872060..11872076,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.48e-31!115;UBERON:0000073!2.03e-27!94;UBERON:0001016!2.03e-27!94;UBERON:0001017!1.59e-25!82;UBERON:0005743!6.08e-25!86;UBERON:0001049!3.56e-23!57;UBERON:0005068!3.56e-23!57;UBERON:0006241!3.56e-23!57;UBERON:0007135!3.56e-23!57;UBERON:0001869!1.91e-22!32;UBERON:0001893!3.62e-22!34;UBERON:0002616!4.63e-22!59;UBERON:0002780!8.33e-22!41;UBERON:0001890!8.33e-22!41;UBERON:0006240!8.33e-22!41;UBERON:0000955!1.20e-21!69;UBERON:0006238!1.20e-21!69;UBERON:0002791!4.31e-21!33;UBERON:0003080!4.70e-21!42;UBERON:0002020!1.72e-20!34;UBERON:0003528!1.72e-20!34;UBERON:0001950!1.59e-18!20;UBERON:0002619!2.84e-18!22;UBERON:0002346!5.69e-18!90;UBERON:0003075!1.64e-17!86;UBERON:0007284!1.64e-17!86;UBERON:0000956!6.21e-17!25;UBERON:0000203!6.21e-17!25;UBERON:0003056!2.04e-15!61;UBERON:0000924!2.97e-14!173;UBERON:0006601!2.97e-14!173;UBERON:0004121!9.74e-14!169;UBERON:0000153!2.00e-12!129;UBERON:0007811!2.00e-12!129;UBERON:0000033!3.08e-12!123;UBERON:0004111!2.70e-09!241;UBERON:0000477!3.03e-09!286;UBERON:0000025!1.04e-08!194;UBERON:0001872!2.08e-07!5;UBERON:0002420!3.44e-07!9;UBERON:0007245!3.44e-07!9;UBERON:0010009!3.44e-07!9;UBERON:0010011!3.44e-07!9;UBERON:0000454!3.44e-07!9;UBERON:0000062!3.91e-07!511;UBERON:0000468!6.67e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;5.99e-18;20!UBERON:0002619;2.97e-16;22!UBERON:0002791;2.74e-15;32!UBERON:0001869;2.97e-15;32!UBERON:0000956;3.36e-14;25!UBERON:0000203;3.36e-14;25!UBERON:0003528;5.23e-13;34!UBERON:0002020;5.23e-13;34!UBERON:0002780;5.70e-13;41!UBERON:0001890;5.70e-13;41!UBERON:0001893;1.99e-12;34!UBERON:0000073;2.26e-09;53!UBERON:0002616;2.26e-09;53!UBERON:0001870;1.63e-07;3!UBERON:0005383;1.63e-07;3!UBERON:0005382;1.63e-07;3!UBERON:0000955;2.29e-07;68!UBERON:0001017;4.19e-07;75!UBERON:0001016;4.74e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,7.43e-18,20;UBERON:0002791,3.34e-16,32;UBERON:0001869,3.34e-16,32;UBERON:0002619,3.61e-16,22;UBERON:0003528,3.73e-15,34;UBERON:0002020,3.73e-15,34;UBERON:0001893,3.73e-15,34;UBERON:0002780,9.85e-15,41;UBERON:0001890,9.85e-15,41;UBERON:0003080,9.85e-15,41;UBERON:0006240,9.85e-15,41;UBERON:0000956,3.98e-14,25;UBERON:0000203,3.98e-14,25;UBERON:0001016,1.54e-13,89;UBERON:0000073,6.88e-13,53;UBERON:0002616,6.88e-13,53;UBERON:0001049,4.53e-12,56;UBERON:0005068,4.53e-12,56;UBERON:0006241,4.53e-12,56;UBERON:0007135,4.53e-12,56;UBERON:0001017,8.61e-12,81;UBERON:0000955,5.28e-11,68;UBERON:0006238,5.28e-11,68;UBERON:0003056,6.21e-11,61;UBERON:0003075,8.24e-09,82;UBERON:0007284,8.24e-09,82;UBERON:0002346,2.82e-08,86;UBERON:0005383,1.53e-07,3;UBERON:0005382,1.53e-07,3;UBERON:0001870,1.69e-07,3;UBERON:0010314,4.56e-07,132 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0,0,0,0,0,0.189069634328136,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.775250277507987,0.71153252537342,0.33472061276467,0,0,0,0,0,0.17859945656816,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,1.0776853765575,1.30769522490767,0.302714855289863,0.576175924479999,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,1.00509759200609,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0.131124414959424,0.451199612907412,0.15403067420883,0,0,0.105551628892876,0,0,0.431831832204279,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0.561594356226918,0,0,0,0,0,0,0,0,3.6868891717015,3.35514161838624,2.66958626739054,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,0.994147647766298,1.1253553312841,0,0,0.211125408127993,0.19924798825107,0.276283915531148,0,0,0,0,0,0.358042349351218,0,0.295930216910801,0,0,0.969332746095218,0.556608588971108,1.99613798001194,0,0,0,0,0,0,1.37897349296586,0,6.25049981759852,0,1.32656082487949,0,0,0.591095237907095,0.438770794307945,0,0,0.923403102045565,0,0,0,0,0.957003479195758,0,0,0,1.56980256395025,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.134802265961354,0,0.702793337176017,0,0,0,0,0,4.28501866282686,0.442306057399416,0.150323419414493,0,0,0.330991955875499,0.313932918407225,0,0,2.91216813327591,0.347119476670262,0,0,0.17472666824203,0,0,0,0,0.387956065953678,0,0.451961481561065,0,0,1.07628353124994,0,0.480952921509202,0,0,0,0,2.57392496792947,0,0.248505071130865,0,0,0.104602846312333,0,0,0.600420288709789,0.547621515567972,0,0,0,0,0.229160424011684,0,0.599037001496973,0,0,0.403100834920358,0,0,0,0,0,0.984274815147488,0,0,0.408610218334727,0.160753148465019,0,0,0,0,1.09349201984444,0,0.236417121897595,1.25891011523995,0,1.25501137532991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52893040697076,1.36869470307464,0,0,0.157204305099666,0,0,0,0,0,0,0,0.306345576763462,0,0,1.77213635993397,0.732157589411779,0,1.14681839138014,0.221858103073705,0.683060432355218,0,0,0,0,0,0.468334905806882,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0.39997479170986,0,0,0,0.184105950251841,0,0,0.639471856518258,0.323474434190045,0.471797825567689,5.89732046236875,0,0.212574920101683,0.247871528518004,0,0,0,0.80057074828547,0,0,0.963438376446893,0,0.478901577171454,1.43581454968528,2.52071696221718,0.899044282034833,0.968853873791107,1.42769420259154,0,0,0,0,0,0,0,0.676892955143315,0,0,0,0,0.147856086217045,0.945526184657525,0.781078098613847,0.826747186004736,0.507326481551255,2.18789923607288,0,0,0,0,0,0,0,1.59363533945908,3.10458295569236,0.115233987555779,0,0.339848664884159,1.44700101838268,0,0.111231401892069,0.627944742804112,1.41404030924402,0.280272163313789,0.913158720509496,0,0,0.78624198594322,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0.118920090777569,0,0,0.452888530700021,0.0771741581079447,0,6.58444214906132,0.735444965261716,3.06379511232114,0.392616934229891,0.297046400327086,0,0,0,0.128915775947154,0,0,0,0,0,0.458729283404541,0,0.631086248772738,0.815897882290976,3.05445483238264,0.5290268405154,0,0,0,0,0,1.64708051314868,0,0,0.0918948995348449,0,0.378893491091197,0.535928260312357,0,0.310298987585686,0,0.952257725854961,0,0.186224142887574,0,0.12729431655633,0.202117188958219,0.217716747896961,0,0.0673520530145875,0.143444410785353,0,0,0,0,0,0,1.34465588601153,1.22068853494722,1.99727032255654,0,0 | |||
|short_description=p5@THSD7A | |||
}} |
Revision as of 15:43, 22 January 2014
Short description: | p5@THSD7A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_THSD7A_5end |
Coexpression cluster: | NA |
Association with transcript: | -236bp_to_ENST00000262042, ENST00000423059, NM_015204, uc003ssf.3_5end |
EntrezGene: | THSD7A |
HGNC: | 22207 |
UniProt: | C9JL67Q9UPZ6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 7.43e-18 | 20 |
regional part of telencephalon | 3.34e-16 | 32 |
cerebral hemisphere | 3.34e-16 | 32 |
regional part of cerebral cortex | 3.61e-16 | 22 |
brain grey matter | 3.73e-15 | 34 |
gray matter | 3.73e-15 | 34 |
telencephalon | 3.73e-15 | 34 |
regional part of forebrain | 9.85e-15 | 41 |
forebrain | 9.85e-15 | 41 |
anterior neural tube | 9.85e-15 | 41 |
future forebrain | 9.85e-15 | 41 |
cerebral cortex | 3.98e-14 | 25 |
pallium | 3.98e-14 | 25 |
nervous system | 1.54e-13 | 89 |
regional part of nervous system | 6.88e-13 | 53 |
regional part of brain | 6.88e-13 | 53 |
neural tube | 4.53e-12 | 56 |
neural rod | 4.53e-12 | 56 |
future spinal cord | 4.53e-12 | 56 |
neural keel | 4.53e-12 | 56 |
central nervous system | 8.61e-12 | 81 |
brain | 5.28e-11 | 68 |
future brain | 5.28e-11 | 68 |
pre-chordal neural plate | 6.21e-11 | 61 |
neural plate | 8.24e-09 | 82 |
presumptive neural plate | 8.24e-09 | 82 |
neurectoderm | 2.82e-08 | 86 |
caudate-putamen | 1.53e-07 | 3 |
dorsal striatum | 1.53e-07 | 3 |
frontal cortex | 1.69e-07 | 3 |
structure with developmental contribution from neural crest | 4.56e-07 | 132 |