FFCP PHASE1:Hg19::chr7:45957026..45957035,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3486 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5472 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-1bp_to_ENST00000417621_5end | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_28_at_IGFBP3_5end | |||
|id=chr7:45957026..45957035,- | |||
|ontology_enrichment_celltype=CL:0002620!2.05e-10!23;CL:0000667!4.54e-09!6;CL:0000058!4.54e-09!6;CL:0000138!4.54e-09!6;CL:0000153!4.54e-08!9;CL:0000447!4.54e-08!9;CL:0000055!6.32e-08!180 | |||
|ontology_enrichment_celltype_v019=CL:0000138;2.52e-32;6!CL:0000153;1.12e-21;9!CL:0000447;1.12e-21;9!CL:0000327;7.43e-20;15!CL:0000499;1.29e-10;28!CL:0002595;2.30e-10;5!CL:0000151;1.73e-07;36!CL:0002589;4.29e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,2.53e-32,6;CL:0000138,2.53e-32,6;CL:0000153,1.12e-21,9;CL:0000447,1.12e-21,9;CL:0000327,6.74e-20,15;CL:0000499,1.23e-10,28;CL:0002595,2.47e-10,5;CL:0000151,3.00e-08,36;CL:0002589,3.48e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0005425;6.42e-13;1 | |||
|ontology_enrichment_disease=DOID:17!6.08e-09!5;DOID:450!6.08e-09!5;DOID:66!6.08e-09!5;DOID:423!6.08e-09!5;DOID:0080000!6.08e-09!5;DOID:11722!6.08e-09!5 | |||
|ontology_enrichment_disease_v019=DOID:2513;2.62e-13;1!DOID:4235;6.42e-13;1!DOID:3571;6.42e-13;1!DOID:3451;2.74e-07;2!DOID:4159;2.74e-07;2!DOID:0060122;2.74e-07;2!DOID:3350;4.29e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2513,2.32e-13,1;DOID:3571,4.77e-13,1;DOID:4235,6.06e-13,1;DOID:3451,2.58e-07,2;DOID:4159,2.58e-07,2;DOID:0060122,2.58e-07,2;DOID:3350,3.70e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0003688!8.87e-08!6;UBERON:0002358!8.87e-08!6;UBERON:0003684!8.87e-08!6;UBERON:0001178!8.87e-08!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;6.42e-13;1!UBERON:0001785;6.42e-13;1!UBERON:0002464;6.42e-13;1!UBERON:0004904;6.42e-13;1!UBERON:0001021;6.42e-13;1!UBERON:0003834;2.30e-10;5!UBERON:0001533;2.30e-10;5!UBERON:0003513;1.19e-07;7!UBERON:0003714;4.29e-07;2!UBERON:0005162;4.29e-07;2!UBERON:0000122;4.29e-07;2!UBERON:0001529;4.29e-07;2!UBERON:0007204;4.29e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,5.38e-13,1;UBERON:0001785,5.38e-13,1;UBERON:0002464,5.38e-13,1;UBERON:0004904,5.38e-13,1;UBERON:0001021,5.38e-13,1;UBERON:0003902,5.38e-13,1;UBERON:0005425,5.38e-13,1;UBERON:0003834,2.47e-10,5;UBERON:0001533,2.47e-10,5;UBERON:0003513,1.25e-07,7;UBERON:0001529,3.48e-07,2;UBERON:0007204,3.48e-07,2;UBERON:0003714,3.93e-07,2;UBERON:0005162,3.93e-07,2;UBERON:0000122,3.93e-07,2 | |||
|phase1_expression=0,0.214100523890983,0.422863212287913,1.0007329835313,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.59022220007589,3.50936537445123,4.63508860674636,0.795285947051099,6.8128881842369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.132409180813219,0,0,0,1.06748995729705,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0.179389635688862,0.213557388818567,1.05965950579781,0.300091096084402,0.721367704669072,0.772921620136887,0.744467425326359,0.337552664482532,0.0974370051611986,0.504867548488229,0.368199594569197,0,0,0.906768884048762,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.623912584592421,0.535286966391485,0.630809660135739,0.585707074963566,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0.384417447767103,0.511707249066704,0.482561763430822,0,0,0.532685175939381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0.10115778085555,0,0.31481234683064,0.6970372701606,0.616067160352178,0,0,0.18532421910392,1.5743737541619,0,0,0,0,0,0,0.78494864019923,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0.551365343546124,1.32687795048244,3.5076070820301,0,0,0,0,0,0,0,0,0,0.633322905892992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0.23874448473769,0.296964680832639,0.307160702099232,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,3.73247505194169,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,1.5991043280559,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0.173559738335131,0,0.0870592065804026,0,0.687944129886466,0,0,0,0,0,0,0,0,0,0,0,0,0.799238438328521,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,1.44119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0.0524545881349981,0,0.179287339332845,0,0,0,0.5085370753095,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0.233713309847224,0,0,0.251567901752575,0.889811221596536,0,0.151230923763239,0.15543720058278,0,0,0,0,0.414706207840855,0,0,0,0.380805212168795,0,0,0,0,0.796191777397232,0,0,0,0,0,0,0,0.453411851024545,0,0,0.358177682162975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0.115525666150338,0,0,0,0,0.40341013740704,0,0,0,0,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0.177404740325278,0,0.171488009437418,0,0,0,0,0,0,0,0,0.647782773655864,2.8665101273223,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35941691750254,0,0.0644578879735772,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0.665320713092027,0,0.106727345877715,0,0,0,0.244482888365733,0.406896178315738,0,0,0 | |||
|short_description=p28@IGFBP3 | |||
}} |
Revision as of 16:56, 22 January 2014
Short description: | p28@IGFBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_IGFBP3_5end |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | -1bp_to_ENST00000417621_5end |
EntrezGene: | IGFBP3 |
HGNC: | 5472 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 2.53e-32 | 6 |
chondrocyte | 2.53e-32 | 6 |
GAG secreting cell | 1.12e-21 | 9 |
carbohydrate secreting cell | 1.12e-21 | 9 |
extracellular matrix secreting cell | 6.74e-20 | 15 |
stromal cell | 1.23e-10 | 28 |
smooth muscle cell of the subclavian artery | 2.47e-10 | 5 |
secretory cell | 3.00e-08 | 36 |
smooth muscle cell of the brachiocephalic vasculature | 3.48e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 5.38e-13 | 1 |
cranial nerve | 5.38e-13 | 1 |
nerve trunk | 5.38e-13 | 1 |
nerve connecting eye with brain | 5.38e-13 | 1 |
nerve | 5.38e-13 | 1 |
retinal neural layer | 5.38e-13 | 1 |
presumptive neural retina | 5.38e-13 | 1 |
thoracic segment blood vessel | 2.47e-10 | 5 |
subclavian artery | 2.47e-10 | 5 |
trunk blood vessel | 1.25e-07 | 7 |
brachiocephalic artery | 3.48e-07 | 2 |
brachiocephalic vasculature | 3.48e-07 | 2 |
neural tissue | 3.93e-07 | 2 |
multi cell component structure | 3.93e-07 | 2 |
neuron projection bundle | 3.93e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 2.32e-13 | 1 |
liver cancer | 4.77e-13 | 1 |
spindle cell sarcoma | 6.06e-13 | 1 |
skin carcinoma | 2.58e-07 | 2 |
skin cancer | 2.58e-07 | 2 |
integumentary system cancer | 2.58e-07 | 2 |
mesenchymal cell neoplasm | 3.70e-07 | 2 |