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{{CL
{{CL
|id=CL:0002614
|alt_id=
|name=neuron of the substantia nigra
|namespace=cell
|def="A neuron of the substantia nigra." [GOC:tfm]
|xref=
|is_a=CL:0000117
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T07:48:42Z
|def="A neuron of the substantia nigra." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002614
|is_a=CL:0000117
|is_obsolete=
|located_in=
|located_in=
|name=neuron of the substantia nigra
|namespace=FANTOM
|obo_creation_date=2011-03-06T07:48:42Z
|part_of=UBERON:0002038
|part_of=UBERON:0002038
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:neuron of the substantia nigra
Namespace:FANTOM
Definition:"A neuron of the substantia nigra." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T07:48:42Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000117(CNS neuron (sensu Vertebrata))
part_of:UBERON:0002038(substantia nigra)



Children


derives from:FF:0000208 (mouse neuron of the substantia nigra sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002614 (neuron of the substantia nigra), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.97e-44FFCP PHASE1:Mm9::chr4:134073493..134073502,-#_82c7d7389bd89ac945d686e54b1bbf88p@chr4:134073493..134073502, -
8.97e-44FFCP PHASE2:Mm9::chr4:134073493..134073502,-#_82c7d7389bd89ac945d686e54b1bbf88p@chr4:134073493..134073502, -
1.7e-39FFCP PHASE1:Mm9::chr2:25324505..25324513,+#_7acb5c4a8a7b93134c8b37d6dfc2259ap@chr2:25324505..25324513, +
1.7e-39FFCP PHASE1:Mm9::chr2:25324524..25324534,+#_7acb5c4a8a7b93134c8b37d6dfc2259ap@chr2:25324524..25324534, +
1.7e-39FFCP PHASE2:Mm9::chr2:25324505..25324513,+#_7acb5c4a8a7b93134c8b37d6dfc2259ap@chr2:25324505..25324513, +
1.7e-39FFCP PHASE2:Mm9::chr2:25324524..25324534,+#_7acb5c4a8a7b93134c8b37d6dfc2259ap@chr2:25324524..25324534, +
2.09e-38FFCP PHASE1:Mm9::chr1:68827407..68827408,-#_b75a72414271c2155623f119c5a10ff5p@chr1:68827407..68827408, -
2.09e-38FFCP PHASE2:Mm9::chr1:68827407..68827408,-#_b75a72414271c2155623f119c5a10ff5p@chr1:68827407..68827408, -
8.86e-38FFCP PHASE1:Mm9::chr9:120089539..120089582,-#_478614e1cfb3bdcc35b6cc4f57e477a5p@chr9:120089539..120089582, -
8.86e-38FFCP PHASE2:Mm9::chr9:120089539..120089582,-#_478614e1cfb3bdcc35b6cc4f57e477a5p@chr9:120089539..120089582, -
1.31e-33FFCP PHASE2:Mm9::chr14:54813640..54813649,+#_1e53429c7285414ec866ab4f1b0a2563p@chr14:54813640..54813649, +
1.31e-33FFCP PHASE1:Mm9::chr14:54813640..54813649,+#_1e53429c7285414ec866ab4f1b0a2563p@chr14:54813640..54813649, +
3.61e-33FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_1ba050d63fa3c91587af5d61fddb7bf2p@chr19:40804786..40804795, -
3.61e-33FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_1ba050d63fa3c91587af5d61fddb7bf2p@chr19:40804786..40804795, -
5.97e-33FFCP PHASE1:Mm9::chr15:59373755..59373758,-#_fd9445045005f976f866c795585bb22dp@chr15:59373755..59373758, -
5.97e-33FFCP PHASE2:Mm9::chr15:59373755..59373758,-#_fd9445045005f976f866c795585bb22dp@chr15:59373755..59373758, -
1.27e-32FFCP PHASE2:Mm9::chr3:95023652..95023663,-#_7c2d0aed369516d03c8f91596733df23p@chr3:95023652..95023663, -
1.27e-32FFCP PHASE1:Mm9::chr3:95023652..95023663,-#_7c2d0aed369516d03c8f91596733df23p@chr3:95023652..95023663, -
5.61e-30FFCP PHASE1:Mm9::chr7:142460262..142460264,+#_4b92c3bed0e6c78cf451eb7e9515de0cp1@Nps
5.61e-30FFCP PHASE2:Mm9::chr7:142460262..142460264,+#_4b92c3bed0e6c78cf451eb7e9515de0cp1@Nps
7.14e-30FFCP PHASE2:Mm9::chr8:74243126..74243137,-#_5152984740a602872710bfe8fa74a368p@chr8:74243126..74243137, -
7.14e-30FFCP PHASE1:Mm9::chr8:74243126..74243137,-#_5152984740a602872710bfe8fa74a368p@chr8:74243126..74243137, -
7.89e-30FFCP PHASE2:Mm9::chr1:196844789..196844794,+#_069f81120365ba95d9cdcb3528bd54edp13@A330023F24Rik
7.89e-30FFCP PHASE2:Mm9::chr3:128902824..128902831,+#_069f81120365ba95d9cdcb3528bd54edp14@Pitx2
7.89e-30FFCP PHASE1:Mm9::chr1:196844789..196844794,+#_069f81120365ba95d9cdcb3528bd54edp13@A330023F24Rik
7.89e-30FFCP PHASE1:Mm9::chr3:128902824..128902831,+#_069f81120365ba95d9cdcb3528bd54edp14@Pitx2
1.54e-29FFCP PHASE1:Mm9::chr9:120088982..120088991,+#_4e81800036c5b441df7f988ccb506fbep@chr9:120088982..120088991, +
1.54e-29FFCP PHASE2:Mm9::chr9:120088982..120088991,+#_4e81800036c5b441df7f988ccb506fbep@chr9:120088982..120088991, +
2.74e-29FFCP PHASE1:Mm9::chr4:98861314..98861320,-#_2dc28069e5b1470fd3641891d9d8fd5fp@chr4:98861314..98861320, -
2.74e-29FFCP PHASE2:Mm9::chr4:98861314..98861320,-#_2dc28069e5b1470fd3641891d9d8fd5fp@chr4:98861314..98861320, -
1.68e-27FFCP PHASE2:Mm9::chr16:31311157..31311167,-#_db2558b3b495c493edf7f7a32cae22fep7@Apod, p7@LOC100047583
1.68e-27FFCP PHASE1:Mm9::chr2:164317532..164317534,+#_db2558b3b495c493edf7f7a32cae22fep@chr2:164317532..164317534, +
1.68e-27FFCP PHASE2:Mm9::chr2:164317532..164317534,+#_db2558b3b495c493edf7f7a32cae22fep@chr2:164317532..164317534, +
1.68e-27FFCP PHASE1:Mm9::chr16:31311157..31311167,-#_db2558b3b495c493edf7f7a32cae22fep7@Apod, p7@LOC100047583
3.8e-27FFCP PHASE2:Mm9::chr18:82753999..82754008,+#_453032cf80b28e0df540a376578f7338p@chr18:82753999..82754008, +
3.8e-27FFCP PHASE1:Mm9::chr18:82753999..82754008,+#_453032cf80b28e0df540a376578f7338p@chr18:82753999..82754008, +
4.66e-27FFCP PHASE2:Mm9::chr9:25062848..25062873,+#_1aef14bea39a6f7a459ca49bd6f0b4cbp@chr9:25062848..25062873, +
4.66e-27FFCP PHASE1:Mm9::chr9:25062848..25062873,+#_1aef14bea39a6f7a459ca49bd6f0b4cbp@chr9:25062848..25062873, +
5.7e-27FFCP PHASE2:Mm9::chr11:115854417..115854426,+#_0f1b43787c89336fdc0f1504faee081ep12@Itgb4
5.7e-27FFCP PHASE1:Mm9::chr11:115854417..115854426,+#_0f1b43787c89336fdc0f1504faee081ep12@Itgb4
1.05e-26FFCP PHASE1:Mm9::chrX:61750178..61750185,+#_93d5d1aad6b6776c096dc50d75c2efd2p@chrX:61750178..61750185, +
1.05e-26FFCP PHASE2:Mm9::chrX:61750178..61750185,+#_93d5d1aad6b6776c096dc50d75c2efd2p@chrX:61750178..61750185, +
2.34e-26FFCP PHASE2:Mm9::chr4:62131958..62131966,-#_95d75c5a14c71825cb522ee0f0858e77p2@Wdr31
2.34e-26FFCP PHASE1:Mm9::chr4:62131958..62131966,-#_95d75c5a14c71825cb522ee0f0858e77p2@Wdr31
6.49e-25FFCP PHASE2:Mm9::chr11:115854376..115854386,+#_3ac8d0305e1f57fdb55306db71b7b9aap11@Itgb4
6.49e-25FFCP PHASE1:Mm9::chr11:115854376..115854386,+#_3ac8d0305e1f57fdb55306db71b7b9aap11@Itgb4
9.4e-25FFCP PHASE1:Mm9::chr9:120088834..120088845,+#_d9fe434612a32b3a4e2946cabf6032cep@chr9:120088834..120088845, +
9.4e-25FFCP PHASE2:Mm9::chr9:120088834..120088845,+#_d9fe434612a32b3a4e2946cabf6032cep@chr9:120088834..120088845, +
1.13e-24FFCP PHASE2:Mm9::chr3:88022163..88022168,+#_4601bd3be404a9317a681c6dc4645468p@chr3:88022163..88022168, +
1.13e-24FFCP PHASE1:Mm9::chr3:88022163..88022168,+#_4601bd3be404a9317a681c6dc4645468p@chr3:88022163..88022168, +
1.36e-24FFCP PHASE1:Mm9::chr9:44961019..44961022,+#_cc62f635adad73f2b33aa24f12884d81p@chr9:44961019..44961022, +
1.36e-24FFCP PHASE2:Mm9::chr9:44961019..44961022,+#_cc62f635adad73f2b33aa24f12884d81p@chr9:44961019..44961022, +
1.63e-24FFCP PHASE1:Mm9::chr7:58877682..58877687,+#_df53b89973e3ab72aeb49408ce81fb26p16@Slc17a6
1.63e-24FFCP PHASE2:Mm9::chr7:58877682..58877687,+#_df53b89973e3ab72aeb49408ce81fb26p16@Slc17a6
1.74e-24FFCP PHASE2:Mm9::chr11:36917853..36917855,-#_65fedb7d609c0ae30034691bf3c78890p@chr11:36917853..36917855, -
1.74e-24FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_65fedb7d609c0ae30034691bf3c78890p@chr8:108091532..108091548, -
1.74e-24FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_65fedb7d609c0ae30034691bf3c78890p@chr8:108091532..108091548, -
1.74e-24FFCP PHASE1:Mm9::chr11:36917853..36917855,-#_65fedb7d609c0ae30034691bf3c78890p@chr11:36917853..36917855, -
3.91e-24FFCP PHASE1:Mm9::chr18:82754158..82754162,+#_273c92222eb6bbed2e847727bdaad69ap@chr18:82754158..82754162, +
3.91e-24FFCP PHASE2:Mm9::chr18:82754158..82754162,+#_273c92222eb6bbed2e847727bdaad69ap@chr18:82754158..82754162, +
6.68e-24FFCP PHASE2:Mm9::chrX:133372432..133372442,-#_e57a83f769f300236080cc30db91c9dap@chrX:133372432..133372442, -
6.68e-24FFCP PHASE1:Mm9::chrX:133372432..133372442,-#_e57a83f769f300236080cc30db91c9dap@chrX:133372432..133372442, -
8.72e-24FFCP PHASE2:Mm9::chr11:55421712..55421719,-#_2270eaff4369786a7c2056bdab4fb282p10@Glra1
8.72e-24FFCP PHASE1:Mm9::chr11:55421712..55421719,-#_2270eaff4369786a7c2056bdab4fb282p10@Glra1
1.19e-23FFCP PHASE2:Mm9::chr2:25324631..25324642,-#_f5abc370b6d3116bea4eee6a3593ef6ep8@Ptgds
1.19e-23FFCP PHASE1:Mm9::chr2:25324631..25324642,-#_f5abc370b6d3116bea4eee6a3593ef6ep8@Ptgds
1.42e-23FFCP PHASE2:Mm9::chr5:27925423..27925425,+#_9145047e9bde556153700b24ed5a8df9p@chr5:27925423..27925425, +
1.42e-23FFCP PHASE1:Mm9::chr5:27925423..27925425,+#_9145047e9bde556153700b24ed5a8df9p@chr5:27925423..27925425, +
1.69e-23FFCP PHASE2:Mm9::chr4:132999231..132999250,+#_34e39475d2601989a83f0fa3e928d329p@chr4:132999231..132999250, +
1.69e-23FFCP PHASE1:Mm9::chr4:132999231..132999250,+#_34e39475d2601989a83f0fa3e928d329p@chr4:132999231..132999250, +
2.38e-23FFCP PHASE2:Mm9::chr9:120089048..120089059,+#_484d5b3b72c115e7e8e6bc6b511802ccp@chr9:120089048..120089059, +
2.38e-23FFCP PHASE1:Mm9::chr9:120089048..120089059,+#_484d5b3b72c115e7e8e6bc6b511802ccp@chr9:120089048..120089059, +
3.35e-23FFCP PHASE2:Mm9::chr11:110858858..110858866,+#_ffe0c40c5e95a15154563767f68e6cf7p7@Kcnj16
3.35e-23FFCP PHASE1:Mm9::chr11:110858858..110858866,+#_ffe0c40c5e95a15154563767f68e6cf7p7@Kcnj16
3.98e-23FFCP PHASE1:Mm9::chr8:28524409..28524418,-#_ec9de59e0e3fcfb4c6a3509746805037p2@Chrna6
3.98e-23FFCP PHASE2:Mm9::chr8:28524409..28524418,-#_ec9de59e0e3fcfb4c6a3509746805037p2@Chrna6
3.98e-23FFCP PHASE1:Mm9::chr1:183734229..183734244,+#_ec9de59e0e3fcfb4c6a3509746805037p@chr1:183734229..183734244, +
3.98e-23FFCP PHASE2:Mm9::chr1:183734229..183734244,+#_ec9de59e0e3fcfb4c6a3509746805037p@chr1:183734229..183734244, +
4.72e-23FFCP PHASE1:Mm9::chr6:54516272..54516275,-#_7790cd09adbe43109539aa3bb9ba95edp9@Scrn1
4.72e-23FFCP PHASE1:Mm9::chr11:67466050..67466065,+#_7790cd09adbe43109539aa3bb9ba95edp24@Gas7
4.72e-23FFCP PHASE2:Mm9::chr11:67466050..67466065,+#_7790cd09adbe43109539aa3bb9ba95edp24@Gas7
4.72e-23FFCP PHASE2:Mm9::chr6:54516272..54516275,-#_7790cd09adbe43109539aa3bb9ba95edp9@Scrn1
7.86e-23FFCP PHASE2:Mm9::chr15:82086756..82086763,+#_5c73b0f36be345a43e4384d4139ffb84p4@1500009C09Rik
7.86e-23FFCP PHASE1:Mm9::chr15:82086756..82086763,+#_5c73b0f36be345a43e4384d4139ffb84p4@1500009C09Rik
1.1e-22FFCP PHASE2:Mm9::chr1:152239838..152239843,-#_2d5302969db7c638af2f8dae3f3bc10ep7@BC003331
1.1e-22FFCP PHASE1:Mm9::chr1:152239838..152239843,-#_2d5302969db7c638af2f8dae3f3bc10ep7@BC003331
1.31e-22FFCP PHASE2:Mm9::chr13:25361035..25361082,-#_24ca8d7c958358d6988c117586c5ce4fp@chr13:25361035..25361082, -
1.31e-22FFCP PHASE1:Mm9::chr13:25361035..25361082,-#_24ca8d7c958358d6988c117586c5ce4fp@chr13:25361035..25361082, -
1.55e-22FFCP PHASE1:Mm9::chr9:120088783..120088795,+#_6ca6f00b7a67f511bab93c571ded7e57p@chr9:120088783..120088795, +
1.55e-22FFCP PHASE2:Mm9::chr9:120088783..120088795,+#_6ca6f00b7a67f511bab93c571ded7e57p@chr9:120088783..120088795, +
1.83e-22FFCP PHASE2:Mm9::chrX:132335433..132335444,+#_fa0ff9e8300f786dd22c1079c2e0ff77p@chrX:132335433..132335444, +
1.83e-22FFCP PHASE1:Mm9::chr2:70401593..70401604,+#_fa0ff9e8300f786dd22c1079c2e0ff77p15@Gad1
1.83e-22FFCP PHASE2:Mm9::chr2:70401593..70401604,+#_fa0ff9e8300f786dd22c1079c2e0ff77p15@Gad1
1.83e-22FFCP PHASE1:Mm9::chrX:132335433..132335444,+#_fa0ff9e8300f786dd22c1079c2e0ff77p@chrX:132335433..132335444, +
3.58e-22FFCP PHASE2:Mm9::chr5:48991226..48991239,-#_b88c63b8faf09a493cf43ceab403296ap7@Kcnip4
3.58e-22FFCP PHASE1:Mm9::chr5:48991226..48991239,-#_b88c63b8faf09a493cf43ceab403296ap7@Kcnip4
4.23e-22FFCP PHASE2:Mm9::chr13:83869274..83869285,-#_91d5315baa446a3cdfad90aa97fd2161p4@ENSMUST00000171323, p4@uc011zcg.1
4.23e-22FFCP PHASE1:Mm9::chr13:83869274..83869285,-#_91d5315baa446a3cdfad90aa97fd2161p4@ENSMUST00000171323, p4@uc011zcg.1
4.98e-22FFCP PHASE1:Mm9::chr6:58856244..58856255,-#_44673e2fb72ed22369ba62a754008f80p@chr6:58856244..58856255, -
4.98e-22FFCP PHASE2:Mm9::chr6:58856244..58856255,-#_44673e2fb72ed22369ba62a754008f80p@chr6:58856244..58856255, -

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