Personal tools

UBERON:0002316: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002316
|alt_id=UBERON:FMA_83929-MA_0001135
|name=white matter
|namespace=
|def="Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter]
|xref=AEO:0000139;;FMA:83929;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png;;MA:0001135;;ncithesaurus:White_Matter;;NIF_GrossAnatomy:Class_2;;OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA;;ZFA:0001682
|is_a=UBERON:0000477;;UBERON:0004121
|synonym="white matter of neuraxis" EXACT [FMA:83929];;"white substance" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_83929-MA_0001135
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002316
|is_a=UBERON:0011215
|is_obsolete=
|located_in=
|located_in=
|name=white matter
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001017
|part_of=UBERON:0001017
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Multi-tissue structure comprised largely of myelinated axons.[TAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="substantia alba" RELATED LATIN [Wikipedia:White_matter];;"white matter of neuraxis" EXACT [FMA:83929];;"white substance" EXACT []
|union_of=
|xref=AEO:0000139;;FMA:83929;;http://upload.wikimedia.org/wikipedia/commons/d/d7/Grey_matter_and_white_matter_-_very_high_mag.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png;;MA:0001135;;ncithesaurus:White_Matter;;NIF_GrossAnatomy:Class_2;;OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA;;TAO:0000145;;TAO:0002142;;TAO:0002143;;ZFA:0001682
}}
}}

Latest revision as of 17:29, 12 September 2014

Name:white matter
Namespace:FANTOM
Definition:"Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter]
Xrefs:
links:

AEO:0000139
FMA:83929
[1]
[ 200px-Spinal_nerve.svg.png 200px-Spinal_nerve.svg.png]
MA:0001135
ncithesaurus:White_Matter
NIF_GrossAnatomy:Class_2
OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA
TAO:0000145
TAO:0002142
TAO:0002143

ZFA:0001682
Synonyms: "substantia alba" RELATED LATIN [Wikipedia:White_matter]
"white matter of neuraxis" EXACT [FMA:83929]
"white substance" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_83929-MA_0001135
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011215(central nervous system cell part cluster)
part_of:UBERON:0001017(central nervous system)



Children

is a:UBERON:0003544 (brain white matter)
part of:UBERON:0007702 (tract of brain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002316 (white matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_1a93c31fc567e45f0646cde12c5cd4a8p@chr15:93827399..93827403, +
5.42e-195FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_1a93c31fc567e45f0646cde12c5cd4a8p@chr15:93827399..93827403, +
5.42e-195FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_1a93c31fc567e45f0646cde12c5cd4a8p@chr17:73689469..73689476, -
5.42e-195FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_1a93c31fc567e45f0646cde12c5cd4a8p@chr14:36462819..36462832, +
5.42e-195FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_1a93c31fc567e45f0646cde12c5cd4a8p@chr14:36462819..36462832, +
5.42e-195FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_1a93c31fc567e45f0646cde12c5cd4a8p@chr17:73689469..73689476, -
5.42e-195FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_1a93c31fc567e45f0646cde12c5cd4a8p3@BC032909, p3@BC032910
5.42e-195FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_1a93c31fc567e45f0646cde12c5cd4a8p3@BC032909, p3@BC032910
9.37e-99FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_dc5393366f83dc734cadc22cd25c7319p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_dc5393366f83dc734cadc22cd25c7319p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_dc5393366f83dc734cadc22cd25c7319p41@NAV3
9.37e-99FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_dc5393366f83dc734cadc22cd25c7319p41@NAV3
9.37e-99FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_dc5393366f83dc734cadc22cd25c7319p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_dc5393366f83dc734cadc22cd25c7319p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_dc5393366f83dc734cadc22cd25c7319p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_dc5393366f83dc734cadc22cd25c7319p@chr2:232548018..232548022, -
2.55e-98FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_bb20359b6ca1dd422c0492d0d6bc330ap@chr19:35788742..35788752, +
2.55e-98FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_bb20359b6ca1dd422c0492d0d6bc330ap10@SH3BP5
2.55e-98FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_bb20359b6ca1dd422c0492d0d6bc330ap10@SH3BP5
2.55e-98FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_bb20359b6ca1dd422c0492d0d6bc330ap@chr19:35788742..35788752, +
1.23e-66FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_737825bdb78baf7d2024c0b749a810a9p@chr8:42037488..42037504, +
1.23e-66FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_737825bdb78baf7d2024c0b749a810a9p@chr8:42037488..42037504, +
1.23e-66FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_737825bdb78baf7d2024c0b749a810a9p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_737825bdb78baf7d2024c0b749a810a9p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_737825bdb78baf7d2024c0b749a810a9p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_737825bdb78baf7d2024c0b749a810a9p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_737825bdb78baf7d2024c0b749a810a9p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_737825bdb78baf7d2024c0b749a810a9p32@NAV3
1.23e-66FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_737825bdb78baf7d2024c0b749a810a9p32@NAV3
1.23e-66FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_737825bdb78baf7d2024c0b749a810a9p@chr17:72823919..72823924, -
2.39e-66FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_6c6a09313f0d665f0739ddab9e612ed3p@chr6:163681762..163681767, +
2.39e-66FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_6c6a09313f0d665f0739ddab9e612ed3p16@FAM13C
2.39e-66FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_6c6a09313f0d665f0739ddab9e612ed3p24@ARHGAP21
2.39e-66FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_6c6a09313f0d665f0739ddab9e612ed3p@chr6:163681762..163681767, +
2.39e-66FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_6c6a09313f0d665f0739ddab9e612ed3p16@FAM13C
2.39e-66FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_6c6a09313f0d665f0739ddab9e612ed3p24@ARHGAP21
4.66e-66FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_c8c7fd5d1cc4cab712fc1f984566fd30p26@PRLR
4.66e-66FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_c8c7fd5d1cc4cab712fc1f984566fd30p15@CNP
4.66e-66FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_c8c7fd5d1cc4cab712fc1f984566fd30p20@PRLR
4.66e-66FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_c8c7fd5d1cc4cab712fc1f984566fd30p15@CNP
4.66e-66FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_c8c7fd5d1cc4cab712fc1f984566fd30p26@PRLR
4.66e-66FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr4:645709..645712,+#_c8c7fd5d1cc4cab712fc1f984566fd30p15@PDE6B
4.66e-66FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr14:91199850..91199861, -
4.66e-66FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr14:91199850..91199861, -
4.66e-66FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_c8c7fd5d1cc4cab712fc1f984566fd30p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE1:Hg19::chr4:645709..645712,+#_c8c7fd5d1cc4cab712fc1f984566fd30p15@PDE6B
4.66e-66FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_c8c7fd5d1cc4cab712fc1f984566fd30p20@PRLR
1.46e-50FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_2b45ff122e9e5b95239fec2eafcab881p2@LOC154449
1.46e-50FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_2b45ff122e9e5b95239fec2eafcab881p2@LOC154449
2.42e-50FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_5d9a20992abb66a75c037553ed0539aap@chr10:7454514..7454525, -
2.42e-50FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_5d9a20992abb66a75c037553ed0539aap@chr10:7454514..7454525, -
2.42e-50FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_5d9a20992abb66a75c037553ed0539aap31@CKAP4
2.42e-50FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_5d9a20992abb66a75c037553ed0539aap@chrX:103031196..103031205, -
2.42e-50FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_5d9a20992abb66a75c037553ed0539aap31@CKAP4
2.42e-50FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_5d9a20992abb66a75c037553ed0539aap6@CYP4F3
2.42e-50FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_5d9a20992abb66a75c037553ed0539aap@chrX:103031196..103031205, -
2.42e-50FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_5d9a20992abb66a75c037553ed0539aap@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_5d9a20992abb66a75c037553ed0539aap6@CYP4F3
2.42e-50FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_5d9a20992abb66a75c037553ed0539aap@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_5d9a20992abb66a75c037553ed0539aap8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_5d9a20992abb66a75c037553ed0539aap8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_5d9a20992abb66a75c037553ed0539aap@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_5d9a20992abb66a75c037553ed0539aap@chr4:74005833..74005844, -
3.99e-50FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_1f60058f4d6e52b5f6b994ab299952f6p@chr17:36726052..36726061, -
3.99e-50FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_1f60058f4d6e52b5f6b994ab299952f6p@chr17:36726052..36726061, -
3.99e-50FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_1f60058f4d6e52b5f6b994ab299952f6p@chr11:45922629..45922637, +
3.99e-50FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_1f60058f4d6e52b5f6b994ab299952f6p@chr11:45922629..45922637, +
3.99e-50FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_1f60058f4d6e52b5f6b994ab299952f6p8@TRIM59
3.99e-50FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_1f60058f4d6e52b5f6b994ab299952f6p@chr6:164364681..164364684, -
3.99e-50FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_1f60058f4d6e52b5f6b994ab299952f6p8@TRIM59
3.99e-50FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_1f60058f4d6e52b5f6b994ab299952f6p@chr6:164364681..164364684, -
3.99e-50FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_1f60058f4d6e52b5f6b994ab299952f6p@chr9:20927844..20927855, +
3.99e-50FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_1f60058f4d6e52b5f6b994ab299952f6p@chr9:20927844..20927855, +
6.58e-50FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_5b42d5b45a0bedf494a97b335180eb2dp6@C6orf192
6.58e-50FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr3:190578500..190578506, -
6.58e-50FFCP PHASE1:Hg19::chr4:7412700..7412704,+#_5b42d5b45a0bedf494a97b335180eb2dp@chr4:7412700..7412704, +
6.58e-50FFCP PHASE2:Hg19::chr3:10706167..10706179,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr3:10706167..10706179, -
6.58e-50FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_5b42d5b45a0bedf494a97b335180eb2dp8@IL1RAPL1
6.58e-50FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr3:190578500..190578506, -
6.58e-50FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr3:10706167..10706179, -
6.58e-50FFCP PHASE1:Hg19::chrX:28605300..28605301,+#_5b42d5b45a0bedf494a97b335180eb2dp8@IL1RAPL1
6.58e-50FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_5b42d5b45a0bedf494a97b335180eb2dp8@CARNS1
6.58e-50FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_5b42d5b45a0bedf494a97b335180eb2dp10@PTPN3
6.58e-50FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_5b42d5b45a0bedf494a97b335180eb2dp13@TTLL4
6.58e-50FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr9:112191163..112191174,-#_5b42d5b45a0bedf494a97b335180eb2dp10@PTPN3
6.58e-50FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_5b42d5b45a0bedf494a97b335180eb2dp8@CARNS1
6.58e-50FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_5b42d5b45a0bedf494a97b335180eb2dp@chr11:117585539..117585541, -
6.58e-50FFCP PHASE2:Hg19::chr6:133119649..133119655,-#_5b42d5b45a0bedf494a97b335180eb2dp6@C6orf192
6.58e-50FFCP PHASE1:Hg19::chr2:219610931..219610941,+#_5b42d5b45a0bedf494a97b335180eb2dp13@TTLL4
6.58e-50FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_5b42d5b45a0bedf494a97b335180eb2dp38@ANKS1B










Property "Property value" (as page type) with input value "UBPROP:0000001 "Multi-tissue structure comprised largely of myelinated axons.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002316&oldid=3277422"