UBERON:0003608: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0003608
|name=hindlimb long bone
|namespace=
|def="A long bone that is part of a hindlimb [Obol]." [OBOL:automatic]
|xref=MA:0000300
|is_a=UBERON:000...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A long bone that is part of a hindlimb [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003608 | |||
|is_a=UBERON:0003464 ;;UBERON:0003606 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=hindlimb long bone | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002103 | |part_of=UBERON:0002103 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym="hind limb long bone" EXACT [OBOL:automatic];;"inferior member long bone" EXACT [OBOL:automatic];;"long bone of hind limb" EXACT [OBOL:automatic];;"long bone of hindlimb" EXACT [OBOL:automatic];;"long bone of inferior member" EXACT [OBOL:automatic];;"long bone of lower extremity" EXACT [OBOL:automatic];;"lower extremity long bone" EXACT [OBOL:automatic] | |||
|union_of= | |||
|xref=MA:0000300 | |||
}} | }} | ||
Latest revision as of 17:40, 12 September 2014
| Name: | hindlimb long bone | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A long bone that is part of a hindlimb [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"hind limb long bone" EXACT [OBOL:automatic] "inferior member long bone" EXACT [OBOL:automatic] "long bone of hind limb" EXACT [OBOL:automatic] "long bone of hindlimb" EXACT [OBOL:automatic] "long bone of inferior member" EXACT [OBOL:automatic] "long bone of lower extremity" EXACT [OBOL:automatic] "lower extremity long bone" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003464(hindlimb bone),UBERON:0003606(limb long bone) |
|---|---|
| part_of: | UBERON:0002103(hindlimb) |
Children
| is a: | UBERON:0000981 (femur) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003608 (hindlimb long bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_697ff7a62e5c8f2f9b1dd1e9bd61106e | p26@Myo18a |
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_697ff7a62e5c8f2f9b1dd1e9bd61106e | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_0bd1d75b03ff1cd3b6fec51a3c6d4914 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_0bd1d75b03ff1cd3b6fec51a3c6d4914 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_0bd1d75b03ff1cd3b6fec51a3c6d4914 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_0bd1d75b03ff1cd3b6fec51a3c6d4914 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_0bd1d75b03ff1cd3b6fec51a3c6d4914 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_0bd1d75b03ff1cd3b6fec51a3c6d4914 | p@chr9:21934585..21934591, - |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_aa6691cd281ba0e012b67e7ddffed6d1 | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_aa6691cd281ba0e012b67e7ddffed6d1 | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_dc00bf8d34ec74468c5cfb8c12e0631e | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_dc00bf8d34ec74468c5cfb8c12e0631e | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_7ade61e7a11deb1cd4b09772212c33f8 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_7ade61e7a11deb1cd4b09772212c33f8 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_7ade61e7a11deb1cd4b09772212c33f8 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_7ade61e7a11deb1cd4b09772212c33f8 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_7ade61e7a11deb1cd4b09772212c33f8 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_7ade61e7a11deb1cd4b09772212c33f8 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_7ade61e7a11deb1cd4b09772212c33f8 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_7ade61e7a11deb1cd4b09772212c33f8 | p@chr6:4490674..4490679, + |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_676eaa36ded562f8af1adb3cc7104d92 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_676eaa36ded562f8af1adb3cc7104d92 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_40641361461e04738e278feed32ee68b | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_40641361461e04738e278feed32ee68b | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_17d3c082f496917e919dc00b7f923298 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_17d3c082f496917e919dc00b7f923298 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_9beb142cfbbc4d35bf4998a6522dd317 | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_9beb142cfbbc4d35bf4998a6522dd317 | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_a6bd10da5e7ff119246f7daea776ab60 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_a6bd10da5e7ff119246f7daea776ab60 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_eb67d3e5c971b9cd3bc0dad3bc7724ec | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_eb67d3e5c971b9cd3bc0dad3bc7724ec | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_29a91de172f8cb4f1e54f34491cad089 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_29a91de172f8cb4f1e54f34491cad089 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_0da6f7269d9ffae6b800dc085abfeb7f | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_0da6f7269d9ffae6b800dc085abfeb7f | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_0da6f7269d9ffae6b800dc085abfeb7f | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_0da6f7269d9ffae6b800dc085abfeb7f | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_13240eca7bf26894be4458875ab5c83d | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_13240eca7bf26894be4458875ab5c83d | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_13240eca7bf26894be4458875ab5c83d | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_13240eca7bf26894be4458875ab5c83d | p4@Lipc |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_f58a9a1e0311cc884fa543491079b944 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_f58a9a1e0311cc884fa543491079b944 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_a208eb6e45456f99067955a7db1720aa | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_a208eb6e45456f99067955a7db1720aa | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_a208eb6e45456f99067955a7db1720aa | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_a208eb6e45456f99067955a7db1720aa | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_4306134014c4128a4c9235ef953097b5 | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_4306134014c4128a4c9235ef953097b5 | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_4dee7de355721a85341dfd1404556055 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_4dee7de355721a85341dfd1404556055 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_4dee7de355721a85341dfd1404556055 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_4dee7de355721a85341dfd1404556055 | p@chr12:70396969..70396979, + |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_e95d901efa9e388f2c8b56f5a7a59474 | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_e95d901efa9e388f2c8b56f5a7a59474 | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_a84de45b09fae48131bd23a186de5e13 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_a84de45b09fae48131bd23a186de5e13 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_e606af3f9afda10fccf24c0cc0690efb | p2@Myh4 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_e606af3f9afda10fccf24c0cc0690efb | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_5a4f283aace94c434cf3bf1704dcb3d0 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_5a4f283aace94c434cf3bf1704dcb3d0 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_28da688b698aec685e7e0941ae2cf3ca | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_28da688b698aec685e7e0941ae2cf3ca | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_28da688b698aec685e7e0941ae2cf3ca | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_28da688b698aec685e7e0941ae2cf3ca | p1@Msmp |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_9de672da81fe673d8ab3bf0c35c32958 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_9de672da81fe673d8ab3bf0c35c32958 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_9de672da81fe673d8ab3bf0c35c32958 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_9de672da81fe673d8ab3bf0c35c32958 | p@chr6:90552017..90552024, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_03b346c5758dd45ceb511a5fb8e96e81 | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_03b346c5758dd45ceb511a5fb8e96e81 | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_0eefbdb77af894ca146e51dbb0704653 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_0eefbdb77af894ca146e51dbb0704653 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_fa6873e774fdb0eed6e33c5604737b55 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_fa6873e774fdb0eed6e33c5604737b55 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_c7f69e5fe89944921b828b1c480458ad | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_c7f69e5fe89944921b828b1c480458ad | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_31c6aac4332691eeb849136d8325c12d | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_31c6aac4332691eeb849136d8325c12d | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_8778d5a6d88bf473a373ba433643fcae | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_8778d5a6d88bf473a373ba433643fcae | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_a6c5a089f09077376ffc00ca107e57e3 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_a6c5a089f09077376ffc00ca107e57e3 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_a6c5a089f09077376ffc00ca107e57e3 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_a6c5a089f09077376ffc00ca107e57e3 | p@chr7:133600635..133600663, + |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_607f7641cb5c0ef82f6a895aa9ed323b | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_607f7641cb5c0ef82f6a895aa9ed323b | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_dc6cf5eafaddfd2dee90b30506943031 | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_dc6cf5eafaddfd2dee90b30506943031 | p1@Mepe |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_330fa101f7a8429cf603b6a6b1afc6a1 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_330fa101f7a8429cf603b6a6b1afc6a1 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_330fa101f7a8429cf603b6a6b1afc6a1 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_330fa101f7a8429cf603b6a6b1afc6a1 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_c1d2f6cc711c9cfb38bbcbd0c3e279df | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_c1d2f6cc711c9cfb38bbcbd0c3e279df | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_c1d2f6cc711c9cfb38bbcbd0c3e279df | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_c1d2f6cc711c9cfb38bbcbd0c3e279df | p@chr15:97806574..97806585, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_af77d9cfeb324278e425d62d2c793951 | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_af77d9cfeb324278e425d62d2c793951 | p2@Siglec15 |
