UBERON:0007524: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0007524
|name=dense mesenchyme tissue
|namespace=
|def="Mesenchyme with little extracellular matrix." [AEO:JB]
|xref=AEO:0000146;;EHDAA2:0003146
|is_...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=EHDAA2:0003146 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Mesenchyme with little extracellular matrix." [AEO:JB] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0007524 | |||
|is_a=UBERON:0003104 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=dense mesenchyme tissue | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=AEO:0000146;;EHDAA2:0003146 | |||
}} | }} | ||
Latest revision as of 18:02, 12 September 2014
| Name: | dense mesenchyme tissue | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Mesenchyme with little extracellular matrix." [AEO:JB] | ||
| Xrefs: |
| ||
| Alt_id: | EHDAA2:0003146 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003104(mesenchyme) |
|---|
Children
| is a: | UBERON:0003077 (paraxial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0005728 (extraembryonic mesoderm),UBERON:0005856 (developing mesenchymal condensation),UBERON:0009494 (pharyngeal arch mesenchymal region),UBERON:0010046 (entire pharyngeal arch associated mesenchyme),UBERON:0010349 (otic capsule pre-cartilage condensation) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007524 (dense mesenchyme tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.34e-47 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_9ad587a0ecdf70216504a40cac499987 | p@chrX:160838683..160838694, + |
| 1.34e-47 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_9ad587a0ecdf70216504a40cac499987 | p@chrX:160838683..160838694, + |
| 4.66e-43 | FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_c4a324db047a1449c3bd02cc07b433a6 | p8@ARHGAP22 |
| 4.66e-43 | FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_c4a324db047a1449c3bd02cc07b433a6 | p8@ARHGAP22 |
| 5.06e-41 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_9dd075e170658a0868803c0cb69acb8a | p@chrX:65748600..65748616, + |
| 5.06e-41 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_9dd075e170658a0868803c0cb69acb8a | p@chr12:105433069..105433075, - |
| 5.06e-41 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_9dd075e170658a0868803c0cb69acb8a | p@chrX:65748600..65748616, + |
| 5.06e-41 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_9dd075e170658a0868803c0cb69acb8a | p@chr12:105433069..105433075, - |
| 6.64e-40 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_00f42557a07ea92897bb17c08675ec19 | p@chrX:160838787..160838800, + |
| 6.64e-40 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_00f42557a07ea92897bb17c08675ec19 | p@chrX:160838787..160838800, + |
| 1.53e-39 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_6d2b4c3a31826fc626877913702fbc42 | p@chr6:53359400..53359406, + |
| 1.53e-39 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_6d2b4c3a31826fc626877913702fbc42 | p@chr6:53359400..53359406, + |
| 3.42e-39 | FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_c67ba370979111da12e8eb665abe7b9e | p@chr9:35685631..35685657, + |
| 3.42e-39 | FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_c67ba370979111da12e8eb665abe7b9e | p@chr9:35685631..35685657, + |
| 2.46e-38 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_fec5f8d43843737bc8d83d10b6d0265b | p2@SASH1 |
| 2.46e-38 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_fec5f8d43843737bc8d83d10b6d0265b | p2@SASH1 |
| 5.1e-38 | FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_15db150f8e5ec797f3eb45832bad1442 | p4@ARHGAP22 |
| 5.1e-38 | FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_15db150f8e5ec797f3eb45832bad1442 | p4@ARHGAP22 |
| 6.65e-36 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_8c6eff17d4657d673d4cb7c5e6586d8d | p@chr11:81849982..81850000, + |
| 6.65e-36 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_8c6eff17d4657d673d4cb7c5e6586d8d | p@chr11:81849982..81850000, + |
| 3.33e-35 | FFCP PHASE1:Hg19::chr10:49813013..49813032,-#_a23f53d9db134657edf97b0bd61e0957 | p3@ARHGAP22 |
| 3.33e-35 | FFCP PHASE2:Hg19::chr10:49813013..49813032,-#_a23f53d9db134657edf97b0bd61e0957 | p3@ARHGAP22 |
| 2.15e-34 | FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_eb51496902aa8c9c8e4ebab8f592d779 | p@chr9:35685445..35685517, + |
| 2.15e-34 | FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_eb51496902aa8c9c8e4ebab8f592d779 | p@chr9:35685445..35685517, + |
| 3.86e-34 | FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_7c5aa72c10927979627e8c3e0e564f66 | p@chr9:35684475..35684520, + |
| 3.86e-34 | FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_7c5aa72c10927979627e8c3e0e564f66 | p@chr9:35684475..35684520, + |
| 7.09e-34 | FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_935c9a99c054f6500dc9111a8df0bc0e | p2@RCN3 |
| 7.09e-34 | FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_935c9a99c054f6500dc9111a8df0bc0e | p2@RCN3 |
| 9.25e-34 | FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_066496df34db4f6a5e51b0d67e2d747e | p2@LRRC17 |
| 9.25e-34 | FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_066496df34db4f6a5e51b0d67e2d747e | p2@LRRC17 |
| 1.81e-33 | FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_c83f1919ca895fb6a5841303ba0d0b71 | p@chr9:35689148..35689192, + |
| 1.81e-33 | FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_c83f1919ca895fb6a5841303ba0d0b71 | p@chr9:35689148..35689192, + |
| 1.81e-33 | FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_2697a2ff4c2a0829595d2af029f9b01c | p@chr13:119579287..119579292, + |
| 1.81e-33 | FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_2697a2ff4c2a0829595d2af029f9b01c | p@chr13:119579287..119579292, + |
| 2.11e-33 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_9e568b92eb6b5fd19c7f8cbb420e7f6e | p@chr17:14813242..14813246, - |
| 2.11e-33 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_9e568b92eb6b5fd19c7f8cbb420e7f6e | p@chr17:14813242..14813246, - |
| 3.09e-33 | FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_6db1e29340ee99d1583604a43db8b1af | p1@LRRC17 |
| 3.09e-33 | FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_6db1e29340ee99d1583604a43db8b1af | p1@LRRC17 |
| 1.1e-32 | FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_f15c74e17c5db77e431b75219ef4464e | p6@COL6A2 |
| 1.1e-32 | FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_f15c74e17c5db77e431b75219ef4464e | p6@COL6A2 |
| 1.19e-32 | FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_2de8f847defab5700152a0beaa36496b | p3@IFI27L2 |
| 1.19e-32 | FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_2de8f847defab5700152a0beaa36496b | p3@IFI27L2 |
| 3.07e-32 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_0faad05eae83c8497f21ad02acbf65b4 | p@chrX:160823859..160823870, + |
| 3.07e-32 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_0faad05eae83c8497f21ad02acbf65b4 | p@chrX:160840025..160840037, + |
| 3.07e-32 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_0faad05eae83c8497f21ad02acbf65b4 | p@chrX:160840048..160840057, + |
| 3.07e-32 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_0faad05eae83c8497f21ad02acbf65b4 | p@chrX:160823859..160823870, + |
| 3.07e-32 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_0faad05eae83c8497f21ad02acbf65b4 | p@chrX:160840025..160840037, + |
| 3.07e-32 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_0faad05eae83c8497f21ad02acbf65b4 | p@chrX:160840048..160840057, + |
| 4.43e-32 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_f85c87ce78a61b4fc7dd96a7dd9f69a8 | p4@Gpr39 |
| 4.43e-32 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_f85c87ce78a61b4fc7dd96a7dd9f69a8 | p4@Gpr39 |
| 5.28e-32 | FFCP PHASE1:Hg19::chr21:47518637..47518688,+#_b3a46bbda8b3c9e31ee2fea9ebbbf6f2 | p2@COL6A2 |
| 5.28e-32 | FFCP PHASE2:Hg19::chr21:47518637..47518688,+#_b3a46bbda8b3c9e31ee2fea9ebbbf6f2 | p2@COL6A2 |
| 1.15e-31 | FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_c79b976edd1dc837919bf78da88ce373 | p@chr9:35685273..35685313, + |
| 1.15e-31 | FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_c79b976edd1dc837919bf78da88ce373 | p@chr9:35685273..35685313, + |
| 4.03e-31 | FFCP PHASE1:Hg19::chr2:33359687..33359717,+#_8096342cf3d4a20dc43be1c47de1bf45 | p2@LTBP1 |
| 4.03e-31 | FFCP PHASE2:Hg19::chr2:33359687..33359717,+#_8096342cf3d4a20dc43be1c47de1bf45 | p2@LTBP1 |
| 5.23e-31 | FFCP PHASE2:Hg19::chr12:53491743..53491754,+#_5d447f37402ebc38382c02fa6414a242 | p1@AK074416 |
| 5.23e-31 | FFCP PHASE1:Hg19::chr12:53491743..53491754,+#_5d447f37402ebc38382c02fa6414a242 | p1@AK074416 |
| 6.45e-31 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_a2ee0e47c08da261959cd13ddaf29593 | p@chr4:74703497..74703511, + |
| 6.45e-31 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_a2ee0e47c08da261959cd13ddaf29593 | p@chr4:74703497..74703511, + |
| 7.77e-31 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_9d7d958b3c6e92828e15bd0534d87fa0 | p@chr2:134548872..134548879, - |
| 7.77e-31 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_9d7d958b3c6e92828e15bd0534d87fa0 | p@chr2:134548872..134548879, - |
| 1.41e-30 | FFCP PHASE1:Hg19::chr21:47532318..47532355,+#_b5a1231cba3db8d581281e3fceb5befb | p8@COL6A2 |
| 1.41e-30 | FFCP PHASE2:Hg19::chr21:47532318..47532355,+#_b5a1231cba3db8d581281e3fceb5befb | p8@COL6A2 |
| 1.54e-30 | FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_8ea3781d372f9384750ee3fb4211d1bf | p@chr7:100773764..100773799, - |
| 1.54e-30 | FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_8ea3781d372f9384750ee3fb4211d1bf | p@chr7:100773764..100773799, - |
| 2.31e-30 | FFCP PHASE1:Hg19::chr21:47542827..47542859,-#_cc1a6479d1238b57dbc19b38d53aafc3 | p@chr21:47542827..47542859, - |
| 2.31e-30 | FFCP PHASE2:Hg19::chr21:47542827..47542859,-#_cc1a6479d1238b57dbc19b38d53aafc3 | p@chr21:47542827..47542859, - |
| 8.44e-30 | FFCP PHASE1:Hg19::chr21:47532107..47532192,+#_ee04c92a004f42f8692a8747708956f3 | p5@COL6A2 |
| 8.44e-30 | FFCP PHASE2:Hg19::chr21:47532107..47532192,+#_ee04c92a004f42f8692a8747708956f3 | p5@COL6A2 |
| 1.78e-29 | FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_0726b8c78d1c52d0728febd6702de5bc | p1@CU675118 |
| 1.78e-29 | FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_0726b8c78d1c52d0728febd6702de5bc | p1@CU675118 |
| 1.8e-29 | FFCP PHASE1:Hg19::chr9:35685692..35685745,-#_18704fd2d4ebec3721977951b5334ff2 | p2@TPM2 |
| 1.8e-29 | FFCP PHASE2:Hg19::chr9:35685692..35685745,-#_18704fd2d4ebec3721977951b5334ff2 | p2@TPM2 |
| 2.49e-29 | FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_e531e4bb2394ade96847117e059a64e1 | p2@ELTD1 |
| 2.49e-29 | FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_e531e4bb2394ade96847117e059a64e1 | p2@ELTD1 |
| 2.65e-29 | FFCP PHASE1:Hg19::chr4:86699834..86699889,+#_7fbc1ca77c7513d9652d4de8911cb00b | p5@ARHGAP24 |
| 2.65e-29 | FFCP PHASE2:Hg19::chr4:86699834..86699889,+#_7fbc1ca77c7513d9652d4de8911cb00b | p5@ARHGAP24 |
| 2.9e-29 | FFCP PHASE1:Hg19::chr21:47404327..47404375,-#_c4b171f35c3900f55849a46057346847 | p@chr21:47404327..47404375, - |
| 2.9e-29 | FFCP PHASE2:Hg19::chr21:47404327..47404375,-#_c4b171f35c3900f55849a46057346847 | p@chr21:47404327..47404375, - |
| 4.51e-29 | FFCP PHASE1:Hg19::chrX:38033461..38033496,-#_d48b9999190ff817211db4beab71ba94 | p@chrX:38033461..38033496, - |
| 4.51e-29 | FFCP PHASE2:Hg19::chrX:38033461..38033496,-#_d48b9999190ff817211db4beab71ba94 | p@chrX:38033461..38033496, - |
| 5.36e-29 | FFCP PHASE1:Hg19::chr21:47532365..47532492,-#_9871b7717721812018d88d7bc7f9af2f | p@chr21:47532365..47532492, - |
| 5.36e-29 | FFCP PHASE2:Hg19::chr21:47532365..47532492,-#_9871b7717721812018d88d7bc7f9af2f | p@chr21:47532365..47532492, - |
| 6.49e-29 | FFCP PHASE2:Hg19::chr2:33359579..33359590,+#_8afc2068e28449b22c7f8b12e10f5055 | p4@LTBP1 |
| 6.49e-29 | FFCP PHASE1:Hg19::chr2:33359579..33359590,+#_8afc2068e28449b22c7f8b12e10f5055 | p4@LTBP1 |
| 6.94e-29 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_4d6ac45ea7e1211abc22ba792c53ae79 | p@chr11:102661517..102661541, - |
| 6.94e-29 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_4d6ac45ea7e1211abc22ba792c53ae79 | p@chr11:102661517..102661541, - |
| 7.21e-29 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_5ee8d1a8ec61505383c9fa8e14bf5a6a | p@chr1:127574253..127574264, + |
| 7.21e-29 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_5ee8d1a8ec61505383c9fa8e14bf5a6a | p@chr1:127574253..127574264, + |
| 7.95e-29 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_3ceadef33d54626d144f981e40a58c03 | p11@Fam198b |
| 7.95e-29 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_3ceadef33d54626d144f981e40a58c03 | p11@Fam198b |
| 8.06e-29 | FFCP PHASE1:Hg19::chr7:100773872..100773904,-#_6d4ad10b60b753602b1000f79a269424 | p@chr7:100773872..100773904, - |
| 8.06e-29 | FFCP PHASE2:Hg19::chr7:100773872..100773904,-#_6d4ad10b60b753602b1000f79a269424 | p@chr7:100773872..100773904, - |
| 8.95e-29 | FFCP PHASE2:Hg19::chr12:53492630..53492661,+#_42e3d5899db5d90543e10abbe6aa2f6e | p4@IGFBP6 |
| 8.95e-29 | FFCP PHASE1:Hg19::chr12:53492630..53492661,+#_42e3d5899db5d90543e10abbe6aa2f6e | p4@IGFBP6 |
| 9.05e-29 | FFCP PHASE2:Hg19::chr7:99686632..99686645,+#_41702c905abe8c173e8d8123b14e6915 | p2@COPS6 |
| 9.05e-29 | FFCP PHASE1:Hg19::chr7:99686632..99686645,+#_41702c905abe8c173e8d8123b14e6915 | p2@COPS6 |
| 9.39e-29 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_bcb3504b8cbd924347e50259ffdbfaef | p7@Gpr39 |
| 9.39e-29 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_bcb3504b8cbd924347e50259ffdbfaef | p7@Gpr39 |
