FFCP PHASE1:Hg19::chr10:129777410..129777418,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:129777410..129777418,- | |||
|coexpression_cluster_id=C2988 | |||
|description=CAGE_peak_at_chr10:129777410..129777418,- | |description=CAGE_peak_at_chr10:129777410..129777418,- | ||
|id=chr10:129777410..129777418,- | |id=chr10:129777410..129777418,- | ||
|ontology_enrichment_celltype=CL:0002057!5.47e-62!42;CL:0000860!2.12e-57!45;CL:0000766!3.92e-48!76;CL:0002194!1.25e-44!63;CL:0000576!1.25e-44!63;CL:0000040!1.25e-44!63;CL:0000559!1.25e-44!63;CL:0002009!4.68e-43!65;CL:0000839!1.63e-39!70;CL:0000557!7.26e-39!71;CL:0000763!3.06e-30!112;CL:0000049!3.06e-30!112;CL:0000738!2.02e-24!140;CL:0002087!2.98e-22!119;CL:0002031!2.34e-19!124;CL:0000037!2.10e-18!172;CL:0000566!2.10e-18!172;CL:0000988!3.04e-18!182;CL:0002032!4.73e-18!165;CL:0000837!4.73e-18!165;CL:0002139!1.84e-17!24;CL:0000071!3.77e-16!18;CL:0002546!3.77e-16!18;CL:0000115!6.05e-16!35;CL:0002144!3.62e-12!3;CL:0002078!4.26e-12!44;CL:0000213!1.05e-08!57;CL:0000215!1.05e-08!57;CL:0000094!2.00e-08!8 | |ontology_enrichment_celltype=CL:0002057!5.47e-62!42;CL:0000860!2.12e-57!45;CL:0000766!3.92e-48!76;CL:0002194!1.25e-44!63;CL:0000576!1.25e-44!63;CL:0000040!1.25e-44!63;CL:0000559!1.25e-44!63;CL:0002009!4.68e-43!65;CL:0000839!1.63e-39!70;CL:0000557!7.26e-39!71;CL:0000763!3.06e-30!112;CL:0000049!3.06e-30!112;CL:0000738!2.02e-24!140;CL:0002087!2.98e-22!119;CL:0002031!2.34e-19!124;CL:0000037!2.10e-18!172;CL:0000566!2.10e-18!172;CL:0000988!3.04e-18!182;CL:0002032!4.73e-18!165;CL:0000837!4.73e-18!165;CL:0002139!1.84e-17!24;CL:0000071!3.77e-16!18;CL:0002546!3.77e-16!18;CL:0000115!6.05e-16!35;CL:0002144!3.62e-12!3;CL:0002078!4.26e-12!44;CL:0000213!1.05e-08!57;CL:0000215!1.05e-08!57;CL:0000094!2.00e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0002393;5.40e-22;6!CL:0002397;5.40e-22;6!CL:0000860;5.82e-13;33!CL:0002057;5.82e-13;33!CL:0000766;1.32e-12;69!CL:0000576;4.01e-12;48!CL:0000473;5.55e-11;39!CL:0000234;5.55e-11;39!CL:0002543;1.12e-10;6!CL:0000771;2.48e-08;2!CL:0000094;5.00e-08;8!CL:0002087;1.70e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.11e-26,42;CL:0002057,2.11e-26,42;CL:0000473,5.23e-23,48;CL:0000234,5.23e-23,48;CL:0000766,2.71e-22,72;CL:0002194,3.00e-18,59;CL:0000576,3.00e-18,59;CL:0000040,3.00e-18,59;CL:0000559,3.00e-18,59;CL:0002009,1.24e-17,61;CL:0000839,2.95e-16,66;CL:0000557,5.26e-16,67;CL:0002393,6.53e-15,9;CL:0002397,6.53e-15,9;CL:0000763,1.44e-14,108;CL:0000049,1.44e-14,108;CL:0000738,1.22e-13,136;CL:0002087,3.49e-11,115;CL:0000037,8.22e-11,168;CL:0002543,1.18e-10,6;CL:0000988,3.38e-10,177;CL:0002032,2.07e-09,161;CL:0000837,2.07e-09,161;CL:0002031,1.34e-08,120;CL:0000771,2.87e-08,2;CL:0000094,5.37e-08,8 | |||
|ontology_enrichment_development_v019=CL:0002057;3.45e-18;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.42e-36!112;UBERON:0002390!5.05e-36!102;UBERON:0003061!5.05e-36!102;UBERON:0002371!9.58e-34!80;UBERON:0001474!6.38e-31!86;UBERON:0002405!7.33e-29!115;UBERON:0003081!3.54e-27!216;UBERON:0004765!2.55e-25!101;UBERON:0001434!2.55e-25!101;UBERON:0001986!3.77e-16!18;UBERON:0004638!3.77e-16!18;UBERON:0004852!3.77e-16!18;UBERON:0000487!6.53e-13!22;UBERON:0002204!1.26e-12!167;UBERON:0001915!3.62e-12!3;UBERON:0001982!3.62e-12!3;UBERON:0006914!3.65e-11!25;UBERON:0000926!9.69e-09!448;UBERON:0004120!9.69e-09!448;UBERON:0006603!9.69e-09!448 | |ontology_enrichment_uberon=UBERON:0002193!1.42e-36!112;UBERON:0002390!5.05e-36!102;UBERON:0003061!5.05e-36!102;UBERON:0002371!9.58e-34!80;UBERON:0001474!6.38e-31!86;UBERON:0002405!7.33e-29!115;UBERON:0003081!3.54e-27!216;UBERON:0004765!2.55e-25!101;UBERON:0001434!2.55e-25!101;UBERON:0001986!3.77e-16!18;UBERON:0004638!3.77e-16!18;UBERON:0004852!3.77e-16!18;UBERON:0000487!6.53e-13!22;UBERON:0002204!1.26e-12!167;UBERON:0001915!3.62e-12!3;UBERON:0001982!3.62e-12!3;UBERON:0006914!3.65e-11!25;UBERON:0000926!9.69e-09!448;UBERON:0004120!9.69e-09!448;UBERON:0006603!9.69e-09!448 | ||
|ontology_enrichment_uberon_v019=UBERON:0001638;2.08e-07;9!UBERON:0003920;2.08e-07;9!UBERON:0004582;2.08e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.91e-14,76;UBERON:0002390,2.77e-13,98;UBERON:0003061,2.77e-13,98;UBERON:0001474,5.87e-13,82;UBERON:0002193,5.71e-12,108;UBERON:0004765,9.68e-12,90;UBERON:0002405,2.45e-11,93;UBERON:0001434,1.73e-10,100;UBERON:0003081,8.94e-09,203;UBERON:0001638,2.15e-07,9;UBERON:0003920,2.15e-07,9;UBERON:0004582,2.15e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,2.63187409637329,0,0,0,0,0,0,3.87796785972314,2.80762226458198,1.51907609501096,0,0.32389366601898,0,0.436194716338694,0,0.242584061187816,0.464858073811369,0.822335776043652,0.929119112685311,0,0,0.47296445977717,1.03423704220986,2.5819387343353,0,0.188242339542605,0,1.79778787556068,0.918251677112708,0.320929027076094,3.83602275479425,0,0.199463657621632,0,0,0.56738522469114,1.86846674698672,0.251248665256743,0,0.65156653411535,0.605399502633369,0.368277635987565,1.58231193720442,0,0,0,0.112328631146495,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.835979866147242,0.258416759169329,0,0,0.402829317109147,0.760272105718513,0.24406205754817,0,0.81014194788176,0.0892997282840798,0,0,3.06633274931766,4.74632829784064,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.433099343283221,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81436848265855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0.476463550915578,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,2.63187409637329,0,0,0,0,0,0,3.87796785972314,2.80762226458198,1.51907609501096,0,0.32389366601898,0,0.436194716338694,0,0.242584061187816,0.464858073811369,0.822335776043652,0.929119112685311,0,0,0.47296445977717,1.03423704220986,2.5819387343353,0,0.188242339542605,0,1.79778787556068,0.918251677112708,0.320929027076094,3.83602275479425,0,0.199463657621632,0,0,0.56738522469114,1.86846674698672,0.251248665256743,0,0.65156653411535,0.605399502633369,0.368277635987565,1.58231193720442,0,0,0,0.112328631146495,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.835979866147242,0.258416759169329,0,0,0.402829317109147,0.760272105718513,0.24406205754817,0,0.81014194788176,0.0892997282840798,0,0,3.06633274931766,4.74632829784064,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.433099343283221,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81436848265855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0.476463550915578,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr10:129777410..129777418,- | |short_description=p@chr10:129777410..129777418,- | ||
}} | }} |
Latest revision as of 11:36, 23 July 2015
Short description: | p@chr10:129777410..129777418, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:129777410..129777418, - |
Coexpression cluster: | C2988_CD14_Endothelial_Peripheral_Basophils_Hepatic_Skeletal_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.11e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.11e-26 | 42 |
defensive cell | 5.23e-23 | 48 |
phagocyte | 5.23e-23 | 48 |
myeloid leukocyte | 2.71e-22 | 72 |
monopoietic cell | 3.00e-18 | 59 |
monocyte | 3.00e-18 | 59 |
monoblast | 3.00e-18 | 59 |
promonocyte | 3.00e-18 | 59 |
macrophage dendritic cell progenitor | 1.24e-17 | 61 |
myeloid lineage restricted progenitor cell | 2.95e-16 | 66 |
granulocyte monocyte progenitor cell | 5.26e-16 | 67 |
intermediate monocyte | 6.53e-15 | 9 |
CD14-positive, CD16-positive monocyte | 6.53e-15 | 9 |
myeloid cell | 1.44e-14 | 108 |
common myeloid progenitor | 1.44e-14 | 108 |
leukocyte | 1.22e-13 | 136 |
nongranular leukocyte | 3.49e-11 | 115 |
hematopoietic stem cell | 8.22e-11 | 168 |
vein endothelial cell | 1.18e-10 | 6 |
hematopoietic cell | 3.38e-10 | 177 |
hematopoietic oligopotent progenitor cell | 2.07e-09 | 161 |
hematopoietic multipotent progenitor cell | 2.07e-09 | 161 |
hematopoietic lineage restricted progenitor cell | 1.34e-08 | 120 |
eosinophil | 2.87e-08 | 2 |
granulocyte | 5.37e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.91e-14 | 76 |
hematopoietic system | 2.77e-13 | 98 |
blood island | 2.77e-13 | 98 |
bone element | 5.87e-13 | 82 |
hemolymphoid system | 5.71e-12 | 108 |
skeletal element | 9.68e-12 | 90 |
immune system | 2.45e-11 | 93 |
skeletal system | 1.73e-10 | 100 |
lateral plate mesoderm | 8.94e-09 | 203 |
vein | 2.15e-07 | 9 |
venous blood vessel | 2.15e-07 | 9 |
venous system | 2.15e-07 | 9 |