FFCP PHASE1:Hg19::chr11:16378028..16378044,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:16378028..16378044,- | |||
|coexpression_cluster_id=C90 | |coexpression_cluster_id=C90 | ||
|description=CAGE_peak_at_chr11:16378028..16378044,- | |description=CAGE_peak_at_chr11:16378028..16378044,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;1.84e-24;2 | |ontology_enrichment_celltype_v019=CL:0000047;1.84e-24;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000047,8.85e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0006241;7.29e-17;3!UBERON:0003057;7.29e-17;3 | |ontology_enrichment_development_v019=UBERON:0006241;7.29e-17;3!UBERON:0003057;7.29e-17;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;5.35e-24;2!DOID:171;2.34e-19;10!DOID:3095;6.22e-09;22!DOID:2994;6.22e-09;22!DOID:3193;4.42e-07;2!DOID:962;4.42e-07;2 | |ontology_enrichment_disease_v019=DOID:1909;5.35e-24;2!DOID:171;2.34e-19;10!DOID:3095;6.22e-09;22!DOID:2994;6.22e-09;22!DOID:3193;4.42e-07;2!DOID:962;4.42e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,2.97e-24,2;DOID:171,2.69e-19,10;DOID:3095,6.62e-09,22;DOID:2994,6.62e-09,22;DOID:3193,5.28e-07,2;DOID:962,5.28e-07,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002346;9.85e-28;4!UBERON:0000923;9.85e-28;4!UBERON:0010316;9.85e-28;4!UBERON:0005291;9.85e-28;4!UBERON:0002050;2.50e-22;5!UBERON:0005423;2.50e-22;5!UBERON:0002240;7.29e-17;3!UBERON:0005174;7.29e-17;3!UBERON:0001137;7.29e-17;3!UBERON:0002336;6.82e-13;1!UBERON:0011215;6.82e-13;1!UBERON:0001018;6.82e-13;1!UBERON:0002473;6.82e-13;1!UBERON:0005340;6.82e-13;1!UBERON:0003544;6.82e-13;1!UBERON:0005970;6.82e-13;1!UBERON:0002316;6.82e-13;1!UBERON:0001020;6.82e-13;1!UBERON:0002437;6.82e-13;1!UBERON:0000922;3.01e-07;49!UBERON:0003714;4.42e-07;2!UBERON:0005162;4.42e-07;2!UBERON:0000122;4.42e-07;2!UBERON:0001016;8.94e-07;83 | |ontology_enrichment_uberon_v019=UBERON:0002346;9.85e-28;4!UBERON:0000923;9.85e-28;4!UBERON:0010316;9.85e-28;4!UBERON:0005291;9.85e-28;4!UBERON:0002050;2.50e-22;5!UBERON:0005423;2.50e-22;5!UBERON:0002240;7.29e-17;3!UBERON:0005174;7.29e-17;3!UBERON:0001137;7.29e-17;3!UBERON:0002336;6.82e-13;1!UBERON:0011215;6.82e-13;1!UBERON:0001018;6.82e-13;1!UBERON:0002473;6.82e-13;1!UBERON:0005340;6.82e-13;1!UBERON:0003544;6.82e-13;1!UBERON:0005970;6.82e-13;1!UBERON:0002316;6.82e-13;1!UBERON:0001020;6.82e-13;1!UBERON:0002437;6.82e-13;1!UBERON:0000922;3.01e-07;49!UBERON:0003714;4.42e-07;2!UBERON:0005162;4.42e-07;2!UBERON:0000122;4.42e-07;2!UBERON:0001016;8.94e-07;83 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,6.22e-17,3;UBERON:0005174,6.22e-17,3;UBERON:0001137,6.22e-17,3;UBERON:0004121,3.02e-13,171;UBERON:0000924,3.02e-13,171;UBERON:0006601,3.02e-13,171;UBERON:0003076,6.61e-13,15;UBERON:0003057,6.61e-13,15;UBERON:0002336,6.82e-13,1;UBERON:0011215,6.82e-13,1;UBERON:0001018,6.82e-13,1;UBERON:0002473,6.82e-13,1;UBERON:0005340,6.82e-13,1;UBERON:0003544,6.82e-13,1;UBERON:0005970,6.82e-13,1;UBERON:0002316,6.82e-13,1;UBERON:0001020,6.82e-13,1;UBERON:0002437,6.82e-13,1;UBERON:0002346,2.87e-12,86;UBERON:0001016,2.20e-11,89;UBERON:0001017,2.55e-10,81;UBERON:0001049,2.01e-09,56;UBERON:0005068,2.01e-09,56;UBERON:0006241,2.01e-09,56;UBERON:0007135,2.01e-09,56;UBERON:0010371,6.43e-08,104;UBERON:0005162,4.42e-07,2;UBERON:0000122,4.42e-07,2;UBERON:0003714,5.28e-07,2 | |||
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|short_description=p@chr11:16378028..16378044,- | |short_description=p@chr11:16378028..16378044,- | ||
}} | }} |
Latest revision as of 20:22, 23 July 2015
Short description: | p@chr11:16378028..16378044, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:16378028..16378044, - |
Coexpression cluster: | C90_neuroectodermal_peripheral_neuroepithelioma_neuroblastoma_carcinoid_parietal_putamen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 8.85e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 6.22e-17 | 3 |
dorsal region element | 6.22e-17 | 3 |
dorsum | 6.22e-17 | 3 |
ectoderm-derived structure | 3.02e-13 | 171 |
ectoderm | 3.02e-13 | 171 |
presumptive ectoderm | 3.02e-13 | 171 |
posterior neural tube | 6.61e-13 | 15 |
chordal neural plate | 6.61e-13 | 15 |
corpus callosum | 6.82e-13 | 1 |
central nervous system cell part cluster | 6.82e-13 | 1 |
axon tract | 6.82e-13 | 1 |
intercerebral commissure | 6.82e-13 | 1 |
dorsal telencephalic commissure | 6.82e-13 | 1 |
brain white matter | 6.82e-13 | 1 |
brain commissure | 6.82e-13 | 1 |
white matter | 6.82e-13 | 1 |
nervous system commissure | 6.82e-13 | 1 |
cerebral hemisphere white matter | 6.82e-13 | 1 |
neurectoderm | 2.87e-12 | 86 |
nervous system | 2.20e-11 | 89 |
central nervous system | 2.55e-10 | 81 |
neural tube | 2.01e-09 | 56 |
neural rod | 2.01e-09 | 56 |
future spinal cord | 2.01e-09 | 56 |
neural keel | 2.01e-09 | 56 |
ecto-epithelium | 6.43e-08 | 104 |
multi cell component structure | 4.42e-07 | 2 |
neuron projection bundle | 4.42e-07 | 2 |
neural tissue | 5.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.97e-24 | 2 |
neuroectodermal tumor | 2.69e-19 | 10 |
germ cell and embryonal cancer | 6.62e-09 | 22 |
germ cell cancer | 6.62e-09 | 22 |
peripheral nerve sheath neoplasm | 5.28e-07 | 2 |
neurofibroma | 5.28e-07 | 2 |