FFCP PHASE1:Hg19::chr12:117099342..117099357,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-29bp_to_ENST00000546835_5end | |association_with_transcript=-29bp_to_ENST00000546835_5end | ||
|cluster_id=chr12:117099342..117099357,+ | |||
|coexpression_cluster_id=C132 | |coexpression_cluster_id=C132 | ||
|description=CAGE_peak_1_at_ENST00000546835_5end | |description=CAGE_peak_1_at_ENST00000546835_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002032;1.18e-07;1!CL:0000557;1.18e-07;1!CL:0000037;2.24e-07;1!CL:0001024;2.24e-07;1!CL:0002563;2.47e-07;4 | |ontology_enrichment_celltype_v019=CL:0002032;1.18e-07;1!CL:0000557;1.18e-07;1!CL:0000037;2.24e-07;1!CL:0001024;2.24e-07;1!CL:0002563;2.47e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.02e-08,108;CL:0000049,1.02e-08,108;CL:0001024,1.69e-07,1;CL:0002563,2.55e-07,4 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1240!5.11e-13!39;DOID:8692!3.74e-12!31;DOID:2531!7.72e-10!51;DOID:0060083!7.72e-10!51 | |ontology_enrichment_disease=DOID:1240!5.11e-13!39;DOID:8692!3.74e-12!31;DOID:2531!7.72e-10!51;DOID:0060083!7.72e-10!51 | ||
|ontology_enrichment_disease_v019=DOID:8692;2.49e-27;31!DOID:1240;3.46e-19;39!DOID:2531;2.93e-12;51!DOID:0060083;2.93e-12;51!DOID:9119;1.44e-07;1 | |ontology_enrichment_disease_v019=DOID:8692;2.49e-27;31!DOID:1240;3.46e-19;39!DOID:2531;2.93e-12;51!DOID:0060083;2.93e-12;51!DOID:9119;1.44e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:8692,1.06e-27,31;DOID:1240,2.41e-25,39;DOID:2531,8.98e-19,51;DOID:0060083,8.98e-19,51;DOID:0050686,1.20e-08,137;DOID:9119,1.48e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001052!2.61e-08!4 | |ontology_enrichment_uberon=UBERON:0001052!2.61e-08!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002134;2.24e-07;1!UBERON:0005208;2.24e-07;1!UBERON:0004145;2.24e-07;1!UBERON:0005946;2.24e-07;1!UBERON:0005965;2.24e-07;1!UBERON:0002078;2.24e-07;1!UBERON:0001242;2.47e-07;4!UBERON:0001262;2.47e-07;4!UBERON:0004786;2.47e-07;4!UBERON:0004808;2.47e-07;4!UBERON:0001277;2.47e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0002134;2.24e-07;1!UBERON:0005208;2.24e-07;1!UBERON:0004145;2.24e-07;1!UBERON:0005946;2.24e-07;1!UBERON:0005965;2.24e-07;1!UBERON:0002078;2.24e-07;1!UBERON:0001242;2.47e-07;4!UBERON:0001262;2.47e-07;4!UBERON:0004786;2.47e-07;4!UBERON:0004808;2.47e-07;4!UBERON:0001277;2.47e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002134,1.91e-07,1;UBERON:0005208,1.91e-07,1;UBERON:0005946,1.91e-07,1;UBERON:0005965,1.91e-07,1;UBERON:0002078,1.91e-07,1;UBERON:0001242,2.55e-07,4;UBERON:0001262,2.55e-07,4;UBERON:0004786,2.55e-07,4;UBERON:0004808,2.55e-07,4;UBERON:0001277,2.55e-07,4 | |||
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| ||
|short_description=p1@ENST00000546835 | |short_description=p1@ENST00000546835 | ||
}} | }} |
Latest revision as of 05:25, 24 July 2015
Short description: | p1@ENST00000546835 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000546835_5end |
Coexpression cluster: | C132_acute_small_Dendritic_Macrophage_CD14_Neutrophils_Monocytederived |
Association with transcript: | -29bp_to_ENST00000546835_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.02e-08 | 108 |
common myeloid progenitor | 1.02e-08 | 108 |
CD34-positive, CD38-negative hematopoietic stem cell | 1.69e-07 | 1 |
intestinal epithelial cell | 2.55e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
tricuspid valve | 1.91e-07 | 1 |
right atrium valve | 1.91e-07 | 1 |
outflow tract of atrium | 1.91e-07 | 1 |
outflow part of right atrium | 1.91e-07 | 1 |
right cardiac atrium | 1.91e-07 | 1 |
intestinal mucosa | 2.55e-07 | 4 |
wall of intestine | 2.55e-07 | 4 |
gastrointestinal system mucosa | 2.55e-07 | 4 |
gastrointestinal system epithelium | 2.55e-07 | 4 |
intestinal epithelium | 2.55e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.06e-27 | 31 |
leukemia | 2.41e-25 | 39 |
hematologic cancer | 8.98e-19 | 51 |
immune system cancer | 8.98e-19 | 51 |
organ system cancer | 1.20e-08 | 137 |
acute myeloid leukemia | 1.48e-07 | 1 |