FFCP PHASE1:Hg19::chr12:54374136..54374181,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:54374136..54374181,+ | |||
|coexpression_cluster_id=C15 | |coexpression_cluster_id=C15 | ||
|description=CAGE_peak_at_chr12:54374136..54374181,+ | |description=CAGE_peak_at_chr12:54374136..54374181,+ | ||
|id=chr12:54374136..54374181,+ | |id=chr12:54374136..54374181,+ | ||
|ontology_enrichment_celltype=CL:0000153!1.63e-11!9;CL:0000447!1.63e-11!9;CL:0000188!9.84e-11!9;CL:0000667!2.76e-07!6;CL:0000058!2.76e-07!6;CL:0000138!2.76e-07!6;CL:0002540!3.36e-07!6;CL:0000327!9.79e-07!14 | |ontology_enrichment_celltype=CL:0000153!1.63e-11!9;CL:0000447!1.63e-11!9;CL:0000188!9.84e-11!9;CL:0000667!2.76e-07!6;CL:0000058!2.76e-07!6;CL:0000138!2.76e-07!6;CL:0002540!3.36e-07!6;CL:0000327!9.79e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000153;1.19e-13;9!CL:0000447;1.19e-13;9!CL:0002540;1.93e-10;6!CL:0000188;6.57e-10;9!CL:0000214;2.25e-08;3!CL:0000327;1.05e-07;15!CL:0002564;1.24e-07;3!CL:0000138;1.88e-07;6!CL:1000507;2.28e-07;10!CL:1000494;2.28e-07;10!CL:0000499;3.61e-07;28!CL:0002620;5.21e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.40e-13,9;CL:0000447,1.40e-13,9;CL:0002540,1.73e-10,6;CL:0000188,6.03e-10,9;CL:0000214,2.42e-08,3;CL:0002564,1.10e-07,3;CL:0000327,1.15e-07,15;CL:0000058,2.07e-07,6;CL:0000138,2.07e-07,6;CL:1000507,2.56e-07,10;CL:1000494,2.56e-07,10;CL:0000499,4.01e-07,28;CL:0002620,4.94e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004905!7.93e-09!5;UBERON:0000982!7.93e-09!5;UBERON:0004770!7.93e-09!5 | |ontology_enrichment_uberon=UBERON:0004905!7.93e-09!5;UBERON:0000982!7.93e-09!5;UBERON:0004770!7.93e-09!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0004905;1.11e-18;8!UBERON:0000982;1.11e-18;8!UBERON:0004770;1.11e-18;8!UBERON:0011135;5.25e-12;5!UBERON:0002216;5.25e-12;5!UBERON:0011134;5.25e-12;5!UBERON:0002209;5.25e-12;5!UBERON:0002213;5.25e-12;5!UBERON:0007844;5.25e-12;5!UBERON:0011138;5.25e-12;5!UBERON:0001130;5.25e-12;5!UBERON:0001066;5.25e-12;5!UBERON:0001468;5.25e-12;5!UBERON:0001134;4.06e-09;16!UBERON:0002036;4.06e-09;16!UBERON:0006915;2.25e-08;3!UBERON:0007616;2.25e-08;3!UBERON:0002217;2.25e-08;3!UBERON:0002018;2.25e-08;3!UBERON:0002204;3.60e-08;70!UBERON:0002113;1.15e-07;24!UBERON:0011143;1.15e-07;24!UBERON:0002242;1.24e-07;3!UBERON:0001013;1.55e-07;14!UBERON:0004765;1.72e-07;26!UBERON:0004211;2.28e-07;10!UBERON:0009773;2.28e-07;10!UBERON:0001231;2.28e-07;10!UBERON:0004810;2.28e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,9.89e-19,8;UBERON:0000982,9.89e-19,8;UBERON:0004770,9.89e-19,8;UBERON:0011135,4.35e-12,5;UBERON:0002216,4.35e-12,5;UBERON:0011134,4.35e-12,5;UBERON:0002209,4.35e-12,5;UBERON:0002213,4.35e-12,5;UBERON:0005856,4.35e-12,5;UBERON:0005866,4.35e-12,5;UBERON:0005863,4.35e-12,5;UBERON:0007844,4.35e-12,5;UBERON:0011138,4.35e-12,5;UBERON:0001130,4.35e-12,5;UBERON:0001066,4.35e-12,5;UBERON:0001468,4.35e-12,5;UBERON:0003104,4.80e-10,160;UBERON:0009142,4.80e-10,160;UBERON:0006915,2.42e-08,3;UBERON:0007616,2.42e-08,3;UBERON:0002217,2.42e-08,3;UBERON:0002018,2.42e-08,3;UBERON:0002242,1.10e-07,3;UBERON:0003068,1.10e-07,3;UBERON:0002328,1.10e-07,3;UBERON:0004880,1.10e-07,3;UBERON:0001013,1.56e-07,14;UBERON:0004810,2.56e-07,10;UBERON:0002113,6.59e-07,26;UBERON:0003918,6.59e-07,26;UBERON:0011143,6.59e-07,26;UBERON:0005095,6.59e-07,26;UBERON:0007687,6.59e-07,26 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,4.42203911398782,3.65659879479774,0,0,0,0,4.95065411840187,3.64537113300707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.5418835525363,5.0133791063589,3.33146993609895,21.4727205703797,0.973269740605272,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.46063537203914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.92078006924546,2.3486899728753,1.13311061057692,1.68540968042698,0,0,0,0,0,1.82032272387605,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,1.28820270022815,4.83903826462134,3.71307930930786,8.28214543870188,0,0,0,0,0,5.59549954624609,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0.241011029883482,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402115889646523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,3.4214489204541,0.308482478109971,0,0,0,0,0,0.387815147273333,0,1.690605505112,0.531876233169741,1.04007436911366,2.82928111688356,0,2.66422179016099,0,3.25572963234866,0,3.25736184293735,0,0.791951872933429,0,0,0,0,0,0,0,0,75.5975596715807,0,13.1504846432245,0,0,0,0,0,0,0,0,0,0,0,0,0,5.15304265220388,1.50051156317903,1.35632511849868,0,0,0,0,0,0,4.1389228517002,0.664225598535437,0.368738337083406,3.30157734978715,0,0,0,0,0,0,0,0.907170879989041,0,0,0,0,0,0,0,1.3878872442239,0.177561725313127,0.328508624055237,0,1.16210378459959,0.120859449591622,0,0,0,0,0,0,0.308061348417659,0.784349769176855,1.46139224653261,1.58327443339314,0,0,0,0,1.08378575017541,1.00337954770971,1.52925763827023,0,1.11937377361089,0,0,0,0,0,0.103041011647722,0,0,0,0,0,5.51023094265095,0.154048617114644,0,1.24052915236078,5.47843248828196,3.91545073568417,0.767039646744908,8.72513949338026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42037263873893,0.92947049429925,0.845086807596724,6.88374490579447,2.45622602532803,2.1400263088875,0,1.26664581178598,10.8667314676768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.34120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0.18714054040822,1.02555725490326,0,0,5.11445064251544,0,0,0,0,0,0,0,105.140453247741,0.597743964753209,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06983080686081,0,0,0,0,0,0,0,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0,0,2.59666367690509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,7.93401916570498,9.72087917246268,6.07654382193748,0,0,0,0,0,0,0,0,0,0,1.44090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,18.6393519243926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36417121897595,4.30127622706984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487170393523584,0,0,0.2506898940227,0,0.983617892129413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08343305802598,6.54076544556695,10.6777346591584,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,5.49433128292469,2.35724642136143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0,0.422624246717254,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795664888465099,0,0.20170506870352,0,0,0,1.6264169483875,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,10.9306143692378,0.913158720509496,2.59113109462346,0,0,0,2.55731135809876,26.7741739345972,0,0,0,0,0,0,0,0,0,0,0,0,5.10381214799263,0.121917924982269,0.647428837187895,0.718639647993729,2.3196288626764,3.88568794447312,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,6.96701170220049,0,0,0,0,0,0,0,0,0,6.46863404992057,0,0,0,4.09194519983426,0.462175628631418,1.29787968637137,0,0,0,0,0,0,0,0.378893491091197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.5843369372164,0.179650404213174,0,0.488965776731466,1.22068853494722,0,0,0 | |phase1_expression=0,0,0,0,0,0.872338524100369,0,4.42203911398782,3.65659879479774,0,0,0,0,4.95065411840187,3.64537113300707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.5418835525363,5.0133791063589,3.33146993609895,21.4727205703797,0.973269740605272,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.46063537203914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.92078006924546,2.3486899728753,1.13311061057692,1.68540968042698,0,0,0,0,0,1.82032272387605,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,1.28820270022815,4.83903826462134,3.71307930930786,8.28214543870188,0,0,0,0,0,5.59549954624609,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0.241011029883482,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402115889646523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,3.4214489204541,0.308482478109971,0,0,0,0,0,0.387815147273333,0,1.690605505112,0.531876233169741,1.04007436911366,2.82928111688356,0,2.66422179016099,0,3.25572963234866,0,3.25736184293735,0,0.791951872933429,0,0,0,0,0,0,0,0,75.5975596715807,0,13.1504846432245,0,0,0,0,0,0,0,0,0,0,0,0,0,5.15304265220388,1.50051156317903,1.35632511849868,0,0,0,0,0,0,4.1389228517002,0.664225598535437,0.368738337083406,3.30157734978715,0,0,0,0,0,0,0,0.907170879989041,0,0,0,0,0,0,0,1.3878872442239,0.177561725313127,0.328508624055237,0,1.16210378459959,0.120859449591622,0,0,0,0,0,0,0.308061348417659,0.784349769176855,1.46139224653261,1.58327443339314,0,0,0,0,1.08378575017541,1.00337954770971,1.52925763827023,0,1.11937377361089,0,0,0,0,0,0.103041011647722,0,0,0,0,0,5.51023094265095,0.154048617114644,0,1.24052915236078,5.47843248828196,3.91545073568417,0.767039646744908,8.72513949338026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42037263873893,0.92947049429925,0.845086807596724,6.88374490579447,2.45622602532803,2.1400263088875,0,1.26664581178598,10.8667314676768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.34120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0.18714054040822,1.02555725490326,0,0,5.11445064251544,0,0,0,0,0,0,0,105.140453247741,0.597743964753209,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06983080686081,0,0,0,0,0,0,0,0.732780747214898,0,0,0,0,0,0,0,0,0,0,0,0,2.59666367690509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,7.93401916570498,9.72087917246268,6.07654382193748,0,0,0,0,0,0,0,0,0,0,1.44090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,18.6393519243926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36417121897595,4.30127622706984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487170393523584,0,0,0.2506898940227,0,0.983617892129413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08343305802598,6.54076544556695,10.6777346591584,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,5.49433128292469,2.35724642136143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0,0.422624246717254,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795664888465099,0,0.20170506870352,0,0,0,1.6264169483875,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,10.9306143692378,0.913158720509496,2.59113109462346,0,0,0,2.55731135809876,26.7741739345972,0,0,0,0,0,0,0,0,0,0,0,0,5.10381214799263,0.121917924982269,0.647428837187895,0.718639647993729,2.3196288626764,3.88568794447312,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,6.96701170220049,0,0,0,0,0,0,0,0,0,6.46863404992057,0,0,0,4.09194519983426,0.462175628631418,1.29787968637137,0,0,0,0,0,0,0,0.378893491091197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.5843369372164,0.179650404213174,0,0.488965776731466,1.22068853494722,0,0,0 | ||
|short_description=p@chr12:54374136..54374181,+ | |short_description=p@chr12:54374136..54374181,+ | ||
}} | }} |
Latest revision as of 09:56, 24 July 2015
Short description: | p@chr12:54374136..54374181, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:54374136..54374181, + |
Coexpression cluster: | C15_anaplastic_small_skeletal_neuroblastoma_parietal_temporal_tongue |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.40e-13 | 9 |
carbohydrate secreting cell | 1.40e-13 | 9 |
mesenchymal stem cell of the bone marrow | 1.73e-10 | 6 |
cell of skeletal muscle | 6.03e-10 | 9 |
synovial cell | 2.42e-08 | 3 |
nucleus pulposus cell of intervertebral disc | 1.10e-07 | 3 |
extracellular matrix secreting cell | 1.15e-07 | 15 |
chondroblast | 2.07e-07 | 6 |
chondrocyte | 2.07e-07 | 6 |
kidney tubule cell | 2.56e-07 | 10 |
nephron tubule epithelial cell | 2.56e-07 | 10 |
stromal cell | 4.01e-07 | 28 |
skin fibroblast | 4.94e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
articulation | 9.89e-19 | 8 |
skeletal joint | 9.89e-19 | 8 |
articular system | 9.89e-19 | 8 |
intervertebral cartilage | 4.35e-12 | 5 |
symphysis | 4.35e-12 | 5 |
nonsynovial joint | 4.35e-12 | 5 |
fibrous joint | 4.35e-12 | 5 |
cartilaginous joint | 4.35e-12 | 5 |
developing mesenchymal condensation | 4.35e-12 | 5 |
pre-cartilage condensation | 4.35e-12 | 5 |
cartilaginous condensation | 4.35e-12 | 5 |
cartilage element | 4.35e-12 | 5 |
post-cranial axial skeletal system | 4.35e-12 | 5 |
vertebral column | 4.35e-12 | 5 |
intervertebral disk | 4.35e-12 | 5 |
intervertebral joint | 4.35e-12 | 5 |
mesenchyme | 4.80e-10 | 160 |
entire embryonic mesenchyme | 4.80e-10 | 160 |
stratified squamous epithelium | 2.42e-08 | 3 |
layer of synovial tissue | 2.42e-08 | 3 |
synovial joint | 2.42e-08 | 3 |
synovial membrane of synovial joint | 2.42e-08 | 3 |
nucleus pulposus | 1.10e-07 | 3 |
axial mesoderm | 1.10e-07 | 3 |
notochord | 1.10e-07 | 3 |
chordamesoderm | 1.10e-07 | 3 |
adipose tissue | 1.56e-07 | 14 |
nephron tubule epithelium | 2.56e-07 | 10 |
kidney | 6.59e-07 | 26 |
kidney mesenchyme | 6.59e-07 | 26 |
upper urinary tract | 6.59e-07 | 26 |
kidney rudiment | 6.59e-07 | 26 |
kidney field | 6.59e-07 | 26 |