FFCP PHASE1:Hg19::chr13:60349189..60349192,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:60349189..60349192,- | |||
|description=CAGE_peak_at_chr13:60349189..60349192,- | |description=CAGE_peak_at_chr13:60349189..60349192,- | ||
|id=chr13:60349189..60349192,- | |id=chr13:60349189..60349192,- | ||
|ontology_enrichment_celltype=CL:0002620!1.19e-22!23;CL:0000359!7.39e-17!32;CL:0000055!1.10e-13!180;CL:0000192!7.67e-12!42;CL:0000514!7.67e-12!42;CL:0000057!9.65e-11!75;CL:0000680!6.95e-09!57;CL:0000056!6.95e-09!57;CL:0000355!6.95e-09!57;CL:0000187!2.50e-08!54;CL:0000183!2.65e-07!59;CL:0000393!4.04e-07!60;CL:0000211!4.04e-07!60 | |ontology_enrichment_celltype=CL:0002620!1.19e-22!23;CL:0000359!7.39e-17!32;CL:0000055!1.10e-13!180;CL:0000192!7.67e-12!42;CL:0000514!7.67e-12!42;CL:0000057!9.65e-11!75;CL:0000680!6.95e-09!57;CL:0000056!6.95e-09!57;CL:0000355!6.95e-09!57;CL:0000187!2.50e-08!54;CL:0000183!2.65e-07!59;CL:0000393!4.04e-07!60;CL:0000211!4.04e-07!60 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.98e-27;23!CL:0002539;5.36e-13;10!CL:0000359;2.32e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,2.64e-27,23;CL:0002539,3.92e-13,10;CL:0000057,5.20e-11,76;CL:0000359,1.28e-08,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!4.71e-09!5;DOID:450!4.71e-09!5;DOID:66!4.71e-09!5;DOID:423!4.71e-09!5;DOID:0080000!4.71e-09!5;DOID:11722!4.71e-09!5;DOID:0060084!6.46e-09!3;DOID:127!6.46e-09!3;DOID:2394!7.76e-08!14;DOID:0060072!9.32e-07!4 | |ontology_enrichment_disease=DOID:17!4.71e-09!5;DOID:450!4.71e-09!5;DOID:66!4.71e-09!5;DOID:423!4.71e-09!5;DOID:0080000!4.71e-09!5;DOID:11722!4.71e-09!5;DOID:0060084!6.46e-09!3;DOID:127!6.46e-09!3;DOID:2394!7.76e-08!14;DOID:0060072!9.32e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:17;2.42e-15;5!DOID:450;2.42e-15;5!DOID:66;2.42e-15;5!DOID:423;2.42e-15;5!DOID:0080000;2.42e-15;5!DOID:11722;2.42e-15;5!DOID:0060084;7.49e-12;3!DOID:127;7.49e-12;3!DOID:2513;3.00e-09;1!DOID:4235;3.00e-09;1!DOID:3571;3.00e-09;1!DOID:0060072;4.15e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.01e-15,5;DOID:450,3.01e-15,5;DOID:66,3.01e-15,5;DOID:423,3.01e-15,5;DOID:0080000,3.01e-15,5;DOID:11722,3.01e-15,5;DOID:0060084,6.04e-12,3;DOID:127,6.04e-12,3;DOID:3571,1.99e-09,1;DOID:2513,2.77e-09,1;DOID:4235,3.53e-09,1;DOID:0060072,3.54e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0002097!6.73e-15!40;UBERON:0002199!2.63e-14!45;UBERON:0002416!2.63e-14!45;UBERON:0001637!1.34e-13!42;UBERON:0003509!1.34e-13!42;UBERON:0004572!1.34e-13!42;UBERON:0004573!1.71e-10!33;UBERON:0004571!1.71e-10!33;UBERON:0001981!1.81e-09!60;UBERON:0007500!1.81e-09!60;UBERON:0004537!1.81e-09!60;UBERON:0006965!1.81e-09!60;UBERON:0001134!4.95e-08!61;UBERON:0002036!4.95e-08!61;UBERON:0003082!4.95e-08!61;UBERON:0002049!7.94e-08!79;UBERON:0007798!7.94e-08!79;UBERON:0000055!1.16e-07!69;UBERON:0002385!1.20e-07!63;UBERON:0001015!1.20e-07!63;UBERON:0000383!1.20e-07!63;UBERON:0004290!2.34e-07!70;UBERON:0003102!2.36e-07!95;UBERON:0000486!2.94e-07!82 | |ontology_enrichment_uberon=UBERON:0002097!6.73e-15!40;UBERON:0002199!2.63e-14!45;UBERON:0002416!2.63e-14!45;UBERON:0001637!1.34e-13!42;UBERON:0003509!1.34e-13!42;UBERON:0004572!1.34e-13!42;UBERON:0004573!1.71e-10!33;UBERON:0004571!1.71e-10!33;UBERON:0001981!1.81e-09!60;UBERON:0007500!1.81e-09!60;UBERON:0004537!1.81e-09!60;UBERON:0006965!1.81e-09!60;UBERON:0001134!4.95e-08!61;UBERON:0002036!4.95e-08!61;UBERON:0003082!4.95e-08!61;UBERON:0002049!7.94e-08!79;UBERON:0007798!7.94e-08!79;UBERON:0000055!1.16e-07!69;UBERON:0002385!1.20e-07!63;UBERON:0001015!1.20e-07!63;UBERON:0000383!1.20e-07!63;UBERON:0004290!2.34e-07!70;UBERON:0003102!2.36e-07!95;UBERON:0000486!2.94e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;4.67e-15;41!UBERON:0004237;5.36e-13;10!UBERON:0004695;5.36e-13;10!UBERON:0002111;5.36e-13;10!UBERON:0004178;5.36e-13;10!UBERON:0002199;8.83e-11;46!UBERON:0002416;8.83e-11;46!UBERON:0003102;7.55e-09;50!UBERON:0001135;1.01e-08;15!UBERON:0004573;3.68e-07;33!UBERON:0004571;3.68e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.48e-18,41;UBERON:0002199,4.91e-16,46;UBERON:0002416,4.91e-16,46;UBERON:0004237,3.92e-13,10;UBERON:0004695,3.92e-13,10;UBERON:0002111,3.92e-13,10;UBERON:0004178,3.92e-13,10;UBERON:0001135,8.28e-09,15;UBERON:0004573,2.42e-08,33;UBERON:0004571,2.42e-08,33 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01697543935533,0,1.46062018077475,1.95173119516203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0.397227542439656,0,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567160915800105,3.94657198515496,0.427114777637135,0,4.20127534518163,1.33968288009971,1.8034837803194,2.41951913231067,0.843881661206331,0.779496041289589,1.26216887122057,0.276149695926898,0.646584227275248,4.26011511019937,9.77295352808111,1.86516651541536,0.193260853163297,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0.07333828582095,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,1.30303176000821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0,0,0,0,0.154209693802656,0,0.328508624055237,0,1.04589340613963,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62962469366128,0,0,1.59691809095107,0,0.55597265731176,0.858749320451947,0,0,0.190630193923825,0,0,0,0.78494864019923,0,0,0,0.202182481573316,1.58510321173008,0,0,2.19342140668156,0,0,0,0,0,0,0.876901770507525,0,0,0.405820753925408,0.6196469961995,0.845086807596724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,0.296964680832639,0,0,0,0.111308705022906,0,0,0,0,0,0,0,1.55519793830904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80149941771202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,6.04955043840887,1.63293680054705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0.477890301491107,0,0,0,0.53168342911599,0,0.300515217994437,0.761610424337591,1.22061219961398,0.363697318405119,0,0,0.796191777397232,0.400027764663154,0.686791410365586,1.34699795506368,0,0,0,0,0,0,0,0.358177682162975,0,0,0,0.38582807654183,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35941691750254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:60349189..60349192,- | |short_description=p@chr13:60349189..60349192,- | ||
}} | }} |
Latest revision as of 16:53, 24 July 2015
Short description: | p@chr13:60349189..60349192, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:60349189..60349192, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 2.64e-27 | 23 |
aortic smooth muscle cell | 3.92e-13 | 10 |
fibroblast | 5.20e-11 | 76 |
vascular associated smooth muscle cell | 1.28e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.48e-18 | 41 |
integument | 4.91e-16 | 46 |
integumental system | 4.91e-16 | 46 |
blood vessel smooth muscle | 3.92e-13 | 10 |
arterial system smooth muscle | 3.92e-13 | 10 |
artery smooth muscle tissue | 3.92e-13 | 10 |
aorta smooth muscle tissue | 3.92e-13 | 10 |
smooth muscle tissue | 8.28e-09 | 15 |
systemic artery | 2.42e-08 | 33 |
systemic arterial system | 2.42e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.01e-15 | 5 |
myotonic disease | 3.01e-15 | 5 |
muscle tissue disease | 3.01e-15 | 5 |
myopathy | 3.01e-15 | 5 |
muscular disease | 3.01e-15 | 5 |
myotonic dystrophy | 3.01e-15 | 5 |
cell type benign neoplasm | 6.04e-12 | 3 |
leiomyoma | 6.04e-12 | 3 |
liver cancer | 1.99e-09 | 1 |
basal cell carcinoma | 2.77e-09 | 1 |
spindle cell sarcoma | 3.53e-09 | 1 |
benign neoplasm | 3.54e-09 | 4 |