FFCP PHASE1:Hg19::chr17:29637535..29637559,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:29637535..29637559,+ | |||
|coexpression_cluster_id=C1225 | |||
|description=CAGE_peak_at_chr17:29637535..29637559,+ | |description=CAGE_peak_at_chr17:29637535..29637559,+ | ||
|id=chr17:29637535..29637559,+ | |id=chr17:29637535..29637559,+ | ||
|ontology_enrichment_celltype=CL:0000542!8.99e-31!53;CL:0000051!8.99e-31!53;CL:0000084!1.28e-30!25;CL:0000827!1.28e-30!25;CL:0000738!6.13e-30!140;CL:0000838!1.45e-29!52;CL:0000037!2.02e-28!172;CL:0000566!2.02e-28!172;CL:0000791!1.64e-27!18;CL:0000789!1.64e-27!18;CL:0002420!1.64e-27!18;CL:0002419!1.64e-27!18;CL:0000790!1.64e-27!18;CL:0000988!1.20e-25!182;CL:0002087!3.12e-24!119;CL:0002032!1.31e-23!165;CL:0000837!1.31e-23!165;CL:0002031!3.95e-23!124;CL:0000625!8.78e-18!11;CL:0000624!1.28e-10!6 | |ontology_enrichment_celltype=CL:0000542!8.99e-31!53;CL:0000051!8.99e-31!53;CL:0000084!1.28e-30!25;CL:0000827!1.28e-30!25;CL:0000738!6.13e-30!140;CL:0000838!1.45e-29!52;CL:0000037!2.02e-28!172;CL:0000566!2.02e-28!172;CL:0000791!1.64e-27!18;CL:0000789!1.64e-27!18;CL:0002420!1.64e-27!18;CL:0002419!1.64e-27!18;CL:0000790!1.64e-27!18;CL:0000988!1.20e-25!182;CL:0002087!3.12e-24!119;CL:0002032!1.31e-23!165;CL:0000837!1.31e-23!165;CL:0002031!3.95e-23!124;CL:0000625!8.78e-18!11;CL:0000624!1.28e-10!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.11e-69;18!CL:0000789;1.11e-69;18!CL:0002419;1.11e-69;18!CL:0000084;8.32e-69;25!CL:0000625;3.95e-48;11!CL:0000624;2.65e-27;6!CL:0000542;1.72e-18;53!CL:0000898;1.03e-14;3!CL:0000226;2.11e-14;3!CL:0000842;2.11e-14;3!CL:0000815;1.59e-10;2!CL:0000792;1.59e-10;2!CL:0002677;1.59e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,8.82e-70,18;CL:0000789,8.82e-70,18;CL:0002420,8.82e-70,18;CL:0002419,8.82e-70,18;CL:0000790,8.82e-70,18;CL:0000084,6.71e-69,25;CL:0000827,6.71e-69,25;CL:0000625,4.35e-48,11;CL:0000838,6.34e-34,52;CL:0000542,3.43e-33,53;CL:0000051,3.43e-33,53;CL:0000624,1.88e-27,6;CL:0002087,3.81e-17,115;CL:0000738,3.66e-15,136;CL:0000898,1.01e-14,3;CL:0000226,2.02e-14,3;CL:0000842,2.02e-14,3;CL:0002031,8.36e-12,120;CL:0000037,3.20e-11,168;CL:0000815,1.51e-10,2;CL:0000792,1.51e-10,2;CL:0002677,1.51e-10,2;CL:0000988,2.26e-10,177;CL:0002032,1.18e-07,161;CL:0000837,1.18e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;1.11e-69;18!CL:0000051;1.72e-18;53 | |||
|ontology_enrichment_disease=DOID:2531!5.51e-07!51;DOID:0060083!5.51e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.02e-10!102;UBERON:0003061!7.02e-10!102;UBERON:0004177!1.09e-09!7;UBERON:0002193!1.42e-09!112;UBERON:0000178!1.75e-07!15;UBERON:0000179!1.75e-07!15;UBERON:0000463!1.75e-07!15;UBERON:0002370!4.44e-07!4;UBERON:0005058!4.44e-07!4;UBERON:0009113!4.44e-07!4;UBERON:0003295!4.44e-07!4;UBERON:0005562!4.44e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.94e-11;2!UBERON:0005058;3.94e-11;2!UBERON:0009113;3.94e-11;2!UBERON:0000178;2.55e-10;15!UBERON:0000179;2.55e-10;15!UBERON:0000463;2.55e-10;15!UBERON:0002390;2.74e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.37e-11,4;UBERON:0005058,1.37e-11,4;UBERON:0009113,1.37e-11,4;UBERON:0003295,1.37e-11,4;UBERON:0005562,1.37e-11,4;UBERON:0000178,2.15e-10,15;UBERON:0000179,2.15e-10,15;UBERON:0000463,2.15e-10,15;UBERON:0003351,7.32e-08,6;UBERON:0001042,1.01e-07,10;UBERON:0009145,1.01e-07,10;UBERON:0006562,5.04e-07,11;UBERON:0004177,8.62e-07,7;UBERON:0005057,8.62e-07,7 | |||
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| ||
|short_description=p@chr17:29637535..29637559,+ | |short_description=p@chr17:29637535..29637559,+ | ||
}} | }} |
Latest revision as of 15:21, 25 July 2015
Short description: | p@chr17:29637535..29637559, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:29637535..29637559, + |
Coexpression cluster: | C1225_thymus_acute_CD4_CD8_Hodgkin_Peripheral_lymph |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
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CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 8.82e-70 | 18 |
alpha-beta T cell | 8.82e-70 | 18 |
immature T cell | 8.82e-70 | 18 |
mature T cell | 8.82e-70 | 18 |
immature alpha-beta T cell | 8.82e-70 | 18 |
T cell | 6.71e-69 | 25 |
pro-T cell | 6.71e-69 | 25 |
CD8-positive, alpha-beta T cell | 4.35e-48 | 11 |
lymphoid lineage restricted progenitor cell | 6.34e-34 | 52 |
lymphocyte | 3.43e-33 | 53 |
common lymphoid progenitor | 3.43e-33 | 53 |
CD4-positive, alpha-beta T cell | 1.88e-27 | 6 |
nongranular leukocyte | 3.81e-17 | 115 |
leukocyte | 3.66e-15 | 136 |
naive T cell | 1.01e-14 | 3 |
single nucleate cell | 2.02e-14 | 3 |
mononuclear cell | 2.02e-14 | 3 |
hematopoietic lineage restricted progenitor cell | 8.36e-12 | 120 |
hematopoietic stem cell | 3.20e-11 | 168 |
regulatory T cell | 1.51e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.51e-10 | 2 |
naive regulatory T cell | 1.51e-10 | 2 |
hematopoietic cell | 2.26e-10 | 177 |
hematopoietic oligopotent progenitor cell | 1.18e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.18e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.37e-11 | 4 |
hemolymphoid system gland | 1.37e-11 | 4 |
thymic region | 1.37e-11 | 4 |
pharyngeal gland | 1.37e-11 | 4 |
thymus primordium | 1.37e-11 | 4 |
blood | 2.15e-10 | 15 |
haemolymphatic fluid | 2.15e-10 | 15 |
organism substance | 2.15e-10 | 15 |
pharyngeal epithelium | 7.32e-08 | 6 |
chordate pharynx | 1.01e-07 | 10 |
pharyngeal region of foregut | 1.01e-07 | 10 |
pharynx | 5.04e-07 | 11 |
hemopoietic organ | 8.62e-07 | 7 |
immune organ | 8.62e-07 | 7 |