FFCP PHASE1:Hg19::chr17:29637535..29637559,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr17:29637535..29637559,+ | |||
|coexpression_cluster_id=C1225 | |||
|description=CAGE_peak_at_chr17:29637535..29637559,+ | |||
|id=chr17:29637535..29637559,+ | |||
|ontology_enrichment_celltype=CL:0000542!8.99e-31!53;CL:0000051!8.99e-31!53;CL:0000084!1.28e-30!25;CL:0000827!1.28e-30!25;CL:0000738!6.13e-30!140;CL:0000838!1.45e-29!52;CL:0000037!2.02e-28!172;CL:0000566!2.02e-28!172;CL:0000791!1.64e-27!18;CL:0000789!1.64e-27!18;CL:0002420!1.64e-27!18;CL:0002419!1.64e-27!18;CL:0000790!1.64e-27!18;CL:0000988!1.20e-25!182;CL:0002087!3.12e-24!119;CL:0002032!1.31e-23!165;CL:0000837!1.31e-23!165;CL:0002031!3.95e-23!124;CL:0000625!8.78e-18!11;CL:0000624!1.28e-10!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.11e-69;18!CL:0000789;1.11e-69;18!CL:0002419;1.11e-69;18!CL:0000084;8.32e-69;25!CL:0000625;3.95e-48;11!CL:0000624;2.65e-27;6!CL:0000542;1.72e-18;53!CL:0000898;1.03e-14;3!CL:0000226;2.11e-14;3!CL:0000842;2.11e-14;3!CL:0000815;1.59e-10;2!CL:0000792;1.59e-10;2!CL:0002677;1.59e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,8.82e-70,18;CL:0000789,8.82e-70,18;CL:0002420,8.82e-70,18;CL:0002419,8.82e-70,18;CL:0000790,8.82e-70,18;CL:0000084,6.71e-69,25;CL:0000827,6.71e-69,25;CL:0000625,4.35e-48,11;CL:0000838,6.34e-34,52;CL:0000542,3.43e-33,53;CL:0000051,3.43e-33,53;CL:0000624,1.88e-27,6;CL:0002087,3.81e-17,115;CL:0000738,3.66e-15,136;CL:0000898,1.01e-14,3;CL:0000226,2.02e-14,3;CL:0000842,2.02e-14,3;CL:0002031,8.36e-12,120;CL:0000037,3.20e-11,168;CL:0000815,1.51e-10,2;CL:0000792,1.51e-10,2;CL:0002677,1.51e-10,2;CL:0000988,2.26e-10,177;CL:0002032,1.18e-07,161;CL:0000837,1.18e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;1.11e-69;18!CL:0000051;1.72e-18;53 | |||
|ontology_enrichment_disease=DOID:2531!5.51e-07!51;DOID:0060083!5.51e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.02e-10!102;UBERON:0003061!7.02e-10!102;UBERON:0004177!1.09e-09!7;UBERON:0002193!1.42e-09!112;UBERON:0000178!1.75e-07!15;UBERON:0000179!1.75e-07!15;UBERON:0000463!1.75e-07!15;UBERON:0002370!4.44e-07!4;UBERON:0005058!4.44e-07!4;UBERON:0009113!4.44e-07!4;UBERON:0003295!4.44e-07!4;UBERON:0005562!4.44e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.94e-11;2!UBERON:0005058;3.94e-11;2!UBERON:0009113;3.94e-11;2!UBERON:0000178;2.55e-10;15!UBERON:0000179;2.55e-10;15!UBERON:0000463;2.55e-10;15!UBERON:0002390;2.74e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.37e-11,4;UBERON:0005058,1.37e-11,4;UBERON:0009113,1.37e-11,4;UBERON:0003295,1.37e-11,4;UBERON:0005562,1.37e-11,4;UBERON:0000178,2.15e-10,15;UBERON:0000179,2.15e-10,15;UBERON:0000463,2.15e-10,15;UBERON:0003351,7.32e-08,6;UBERON:0001042,1.01e-07,10;UBERON:0009145,1.01e-07,10;UBERON:0006562,5.04e-07,11;UBERON:0004177,8.62e-07,7;UBERON:0005057,8.62e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.0821005894499457,0.157421562627358,0.786728553697808,0,0.154816123316076,0,0,0,0.387336002901508,0.568676929949686,0.293600439334847,0.553995408531877,0,0,0.223915474239924,0.647787332037959,0.77272670290256,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0.449446968890169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0.212604299965044,0,0.336985893439485,0.450530678524519,0,0.285012743741249,0.39783335439818,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,5.31116379307349,1.96505381374582,2.46721798799411,0.83593247695339,7.17028986593899,6.62826928028627,7.79306913631645,0.334231370655521,2.65145316727353,2.21533894583621,3.24964636518019,0.128091319725675,0.910415432919148,1.15106533222573,1.38175008892924,1.15921234294021,8.00747441075126,7.49114318651197,5.22677619024884,0.453237370790265,2.29932296161153,2.06176467289578,5.56643322442906,4.45991580053735,5.85975108470777,3.8018081777935,3.01150238155546,2.68771883424279,1.24930726552346,2.13099526839615,2.46338399076314,1.20964045934839,1.60464117470104,3.33096128930438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348259474598534,0.132957960518865,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.94633578946371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985326475791887,0.704387472105808,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0.205476322550383,0,0.112085143993527,0.788123040807709,0.862510299438069,0.898401253958239,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,3.3082884179662,3.01999881146064,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,3.33524485640905,1.64544909234478,1.94541993357815,0.540031437238115,0.79312517629427,0,0,0,0.929015875628594,1.298422916788,6.82961696144775,2.71024663638998,0,0.191505370132367,0,0,0.561594356226918,0.912938716132769,0,0,0,0,0.201799707191048,0.425846237690326,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0.123084805461069,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04386596391473,0.156980256395025,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0.729819156862664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0.0969890164884194,0,0,0,0,0.189932387867636,0.195551382734803,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0.77380195455795,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0,0,0,0,0,0.19998739585493,0.106691729694141,0,0,0,0,0,0,0,0.314531883711793,0,0,0,0,0,0,0.630893960010027,0,0,0,0,0,0,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5647304101948,0,0.150962843566674,0.0771741581079447,0.218559560503957,0,0,0,0.196308467114945,0.594092800654172,0,0,0.0939839179798536,0.45120521581504,0.0999411559249289,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0.476128862927481,16.5993498278536,11.6700462876213,0,0,0,0,0,1.27968900727716,0,0,0,0,0,0,0,0,0,0,1.81146414231924,0 | |||
|short_description=p@chr17:29637535..29637559,+ | |||
}} |
Latest revision as of 15:21, 25 July 2015
Short description: | p@chr17:29637535..29637559, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:29637535..29637559, + |
Coexpression cluster: | C1225_thymus_acute_CD4_CD8_Hodgkin_Peripheral_lymph |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 8.82e-70 | 18 |
alpha-beta T cell | 8.82e-70 | 18 |
immature T cell | 8.82e-70 | 18 |
mature T cell | 8.82e-70 | 18 |
immature alpha-beta T cell | 8.82e-70 | 18 |
T cell | 6.71e-69 | 25 |
pro-T cell | 6.71e-69 | 25 |
CD8-positive, alpha-beta T cell | 4.35e-48 | 11 |
lymphoid lineage restricted progenitor cell | 6.34e-34 | 52 |
lymphocyte | 3.43e-33 | 53 |
common lymphoid progenitor | 3.43e-33 | 53 |
CD4-positive, alpha-beta T cell | 1.88e-27 | 6 |
nongranular leukocyte | 3.81e-17 | 115 |
leukocyte | 3.66e-15 | 136 |
naive T cell | 1.01e-14 | 3 |
single nucleate cell | 2.02e-14 | 3 |
mononuclear cell | 2.02e-14 | 3 |
hematopoietic lineage restricted progenitor cell | 8.36e-12 | 120 |
hematopoietic stem cell | 3.20e-11 | 168 |
regulatory T cell | 1.51e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.51e-10 | 2 |
naive regulatory T cell | 1.51e-10 | 2 |
hematopoietic cell | 2.26e-10 | 177 |
hematopoietic oligopotent progenitor cell | 1.18e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.18e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.37e-11 | 4 |
hemolymphoid system gland | 1.37e-11 | 4 |
thymic region | 1.37e-11 | 4 |
pharyngeal gland | 1.37e-11 | 4 |
thymus primordium | 1.37e-11 | 4 |
blood | 2.15e-10 | 15 |
haemolymphatic fluid | 2.15e-10 | 15 |
organism substance | 2.15e-10 | 15 |
pharyngeal epithelium | 7.32e-08 | 6 |
chordate pharynx | 1.01e-07 | 10 |
pharyngeal region of foregut | 1.01e-07 | 10 |
pharynx | 5.04e-07 | 11 |
hemopoietic organ | 8.62e-07 | 7 |
immune organ | 8.62e-07 | 7 |