FFCP PHASE1:Hg19::chr2:58113353..58113375,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:58113353..58113375,- | |||
|coexpression_cluster_id=C115 | |||
|description=CAGE_peak_at_chr2:58113353..58113375,- | |||
|id=chr2:58113353..58113375,- | |||
|ontology_enrichment_celltype=CL:0000242!1.15e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0000123;3.13e-21;2!CL:0000242;3.13e-21;2!CL:0000167;3.12e-11;1!CL:0000164;3.12e-11;1!CL:0000502;3.12e-11;1!CL:0000172;3.12e-11;1!CL:0002553;3.12e-11;1!CL:0000173;3.12e-11;1!CL:0000312;4.68e-09;5!CL:0000240;1.09e-07;6!CL:0000311;1.09e-07;6!CL:0000079;1.09e-07;6!CL:0000237;1.09e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,3.13e-21,2;CL:0002553,2.96e-11,1;CL:0000167,3.28e-11,1;CL:0000164,3.28e-11,1;CL:0000502,3.28e-11,1;CL:0000172,3.28e-11,1;CL:0000173,3.28e-11,1;CL:0002351,3.28e-11,1;CL:0000312,4.68e-09,5;CL:0000240,1.09e-07,6;CL:0000311,1.09e-07,6;CL:0000079,1.09e-07,6;CL:0000237,1.09e-07,6;CL:0000036,1.09e-07,6;CL:0000357,1.09e-07,6;CL:0000114,1.09e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002351;3.12e-11;1!UBERON:0005425;4.91e-11;1!CL:0000357;1.09e-07;6!CL:0000114;1.09e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3119;1.03e-11;14!DOID:4430;3.12e-11;1!DOID:169;1.89e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,1.07e-11,14;DOID:4430,3.28e-11,1;DOID:169,1.80e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.28e-52!57;UBERON:0005068!2.28e-52!57;UBERON:0006241!2.28e-52!57;UBERON:0007135!2.28e-52!57;UBERON:0002780!2.41e-52!41;UBERON:0001890!2.41e-52!41;UBERON:0006240!2.41e-52!41;UBERON:0003080!5.81e-51!42;UBERON:0002616!4.68e-47!59;UBERON:0001017!6.51e-44!82;UBERON:0000073!6.89e-42!94;UBERON:0001016!6.89e-42!94;UBERON:0005743!1.67e-41!86;UBERON:0000955!2.93e-41!69;UBERON:0006238!2.93e-41!69;UBERON:0002020!3.23e-37!34;UBERON:0003528!3.23e-37!34;UBERON:0001893!7.43e-37!34;UBERON:0003075!1.84e-34!86;UBERON:0007284!1.84e-34!86;UBERON:0002791!1.96e-34!33;UBERON:0003056!3.54e-33!61;UBERON:0002346!1.41e-32!90;UBERON:0001869!9.06e-32!32;UBERON:0007023!1.50e-29!115;UBERON:0000153!1.09e-24!129;UBERON:0007811!1.09e-24!129;UBERON:0004121!7.19e-24!169;UBERON:0002308!1.49e-23!9;UBERON:0000125!1.49e-23!9;UBERON:0000924!4.20e-23!173;UBERON:0006601!4.20e-23!173;UBERON:0000033!4.57e-23!123;UBERON:0002619!1.65e-21!22;UBERON:0001950!3.58e-20!20;UBERON:0000956!1.09e-18!25;UBERON:0000203!1.09e-18!25;UBERON:0001894!2.55e-18!7;UBERON:0006222!2.55e-18!7;UBERON:0002420!4.26e-18!9;UBERON:0007245!4.26e-18!9;UBERON:0010009!4.26e-18!9;UBERON:0010011!4.26e-18!9;UBERON:0000454!4.26e-18!9;UBERON:0009663!2.48e-17!7;UBERON:0000025!6.73e-14!194;UBERON:0006331!2.36e-11!3;UBERON:0000988!2.44e-11!3;UBERON:0002298!5.85e-11!8;UBERON:0002021!7.79e-11!5;UBERON:0004111!2.41e-10!241;UBERON:0000477!1.88e-09!286;UBERON:0003296!3.26e-09!4;UBERON:0010133!3.26e-09!4;UBERON:0000200!6.02e-09!6;UBERON:0000483!7.26e-09!309;UBERON:0000007!7.39e-09!2;UBERON:0000119!1.08e-08!312;UBERON:0000369!3.32e-08!4;UBERON:0002435!3.32e-08!4;UBERON:0000204!3.32e-08!4;UBERON:0010082!3.32e-08!4;UBERON:0001897!4.07e-08!2;UBERON:0002148!4.69e-08!2;UBERON:0009662!4.69e-08!2;UBERON:0001875!5.79e-08!2;UBERON:0006514!5.79e-08!2;UBERON:0000064!6.16e-08!219;UBERON:0005162!6.43e-08!2;UBERON:0000122!6.43e-08!2;UBERON:0000475!3.12e-07!365;UBERON:0001871!6.43e-07!7;UBERON:0000349!9.01e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0003296;2.01e-23;4!UBERON:0010133;2.01e-23;4!UBERON:0000007;9.15e-22;2!UBERON:0001894;1.18e-13;7!UBERON:0002038;4.91e-11;1!UBERON:0000941;4.91e-11;1!UBERON:0001785;4.91e-11;1!UBERON:0002464;4.91e-11;1!UBERON:0004904;4.91e-11;1!UBERON:0001021;4.91e-11;1!UBERON:0009661;4.91e-11;1!UBERON:0002950;4.91e-11;1!UBERON:0001891;4.91e-11;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,2.17e-23,4;UBERON:0010133,2.17e-23,4;UBERON:0000007,9.15e-22,2;UBERON:0001894,1.23e-13,7;UBERON:0006222,1.23e-13,7;UBERON:0000941,4.44e-11,1;UBERON:0001785,4.44e-11,1;UBERON:0002464,4.44e-11,1;UBERON:0004904,4.44e-11,1;UBERON:0001021,4.44e-11,1;UBERON:0003902,4.44e-11,1;UBERON:0005425,4.44e-11,1;UBERON:0002038,6.00e-11,1;UBERON:0009661,6.00e-11,1;UBERON:0002950,6.00e-11,1;UBERON:0001891,6.00e-11,1;UBERON:0009616,6.00e-11,1;UBERON:0010286,6.00e-11,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2062677438423,12.2329878280419,12.9085681354434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703347082052564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,7.58435421131222,0,0,0,0.241192877250816,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06165873098648,4.11827994868715,0,0,0,0,0,0,0,0.600420288709789,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.242998226632099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.66116300871345,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0,0,0,0.372578417648301,0,0,0,0,0,10.7717028335583,6.95620937331961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53473245564382,0,0,0,0,0,0,0,0,0,2.40171224485641,0,0,0.256916900385838,0,0.319267718114302,0.205116364240755,0.252071696221718,0.0691572524642179,0.484426936895553,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.413373593002368,0.126831620387814,0,0,0,0,0,1.07140367175657,0,16.3880713143891,22.7662191351298,0,0,0,0.883606528698812,0.0657727735628491,0,0,0,0.314231179832004,0,0,0,0,0,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80727356154527,0,0,0,0.109940516745429,3.77407108916684,0,0,7.52507674178437,0,2.12108892391463,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,1.00337708206016,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0.413731983447581,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:58113353..58113375,- | |||
}} |
Latest revision as of 11:04, 29 July 2015
Short description: | p@chr2:58113353..58113375, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:58113353..58113375, - |
Coexpression cluster: | C115_pituitary_Neural_caudate_putamen_amygdala_medulla_hippocampus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 3.13e-21 | 2 |
lung fibroblast | 2.96e-11 | 1 |
peptide hormone secreting cell | 3.28e-11 | 1 |
enteroendocrine cell | 3.28e-11 | 1 |
type D enteroendocrine cell | 3.28e-11 | 1 |
somatostatin secreting cell | 3.28e-11 | 1 |
pancreatic D cell | 3.28e-11 | 1 |
progenitor cell of endocrine pancreas | 3.28e-11 | 1 |
keratinocyte | 4.68e-09 | 5 |
stratified squamous epithelial cell | 1.09e-07 | 6 |
keratin accumulating cell | 1.09e-07 | 6 |
stratified epithelial cell | 1.09e-07 | 6 |
keratinizing barrier epithelial cell | 1.09e-07 | 6 |
epithelial fate stem cell | 1.09e-07 | 6 |
stratified epithelial stem cell | 1.09e-07 | 6 |
surface ectodermal cell | 1.09e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
gland of diencephalon | 2.17e-23 | 4 |
neuroendocrine gland | 2.17e-23 | 4 |
pituitary gland | 9.15e-22 | 2 |
diencephalon | 1.23e-13 | 7 |
future diencephalon | 1.23e-13 | 7 |
cranial nerve II | 4.44e-11 | 1 |
cranial nerve | 4.44e-11 | 1 |
nerve trunk | 4.44e-11 | 1 |
nerve connecting eye with brain | 4.44e-11 | 1 |
nerve | 4.44e-11 | 1 |
retinal neural layer | 4.44e-11 | 1 |
presumptive neural retina | 4.44e-11 | 1 |
substantia nigra | 6.00e-11 | 1 |
midbrain nucleus | 6.00e-11 | 1 |
regional part of midbrain | 6.00e-11 | 1 |
midbrain | 6.00e-11 | 1 |
presumptive midbrain | 6.00e-11 | 1 |
midbrain neural tube | 6.00e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 1.07e-11 | 14 |
somatostatinoma | 3.28e-11 | 1 |
neuroendocrine tumor | 1.80e-07 | 6 |