FFCP PHASE1:Hg19::chr3:128456699..128456704,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:128456699..128456704,+
|short_description=p@chr3:128456699..128456704,+
|description=CAGE_peak_at_chr3:128456699..128456704,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:128456699..128456704,+ | |||
|coexpression_cluster_id=C1573 | |||
|description=CAGE_peak_at_chr3:128456699..128456704,+ | |||
|id=chr3:128456699..128456704,+ | |||
|ontology_enrichment_celltype=CL:0000037!9.34e-29!172;CL:0000566!9.34e-29!172;CL:0000738!1.60e-28!140;CL:0002032!3.10e-27!165;CL:0000837!3.10e-27!165;CL:0000988!2.21e-25!182;CL:0002031!1.30e-24!124;CL:0002087!1.03e-23!119;CL:0000766!2.76e-20!76;CL:0002057!1.20e-19!42;CL:0000763!1.25e-19!112;CL:0000049!1.25e-19!112;CL:0000860!2.17e-18!45;CL:0000557!8.13e-18!71;CL:0002009!3.89e-17!65;CL:0000839!4.70e-17!70;CL:0002194!4.49e-16!63;CL:0000576!4.49e-16!63;CL:0000040!4.49e-16!63;CL:0000559!4.49e-16!63;CL:0000542!2.33e-07!53;CL:0000051!2.33e-07!53;CL:0000838!2.70e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.39e-17;33!CL:0002057;6.39e-17;33!CL:0000473;3.57e-13;39!CL:0000234;3.57e-13;39!CL:0000576;5.76e-12;48!CL:0000766;2.86e-10;69!CL:0002087;1.56e-08;104!CL:0000738;9.29e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,9.44e-30,136;CL:0000037,4.57e-29,168;CL:0002032,1.77e-27,161;CL:0000837,1.77e-27,161;CL:0000988,2.31e-26,177;CL:0002031,1.25e-25,120;CL:0002087,5.39e-25,115;CL:0000766,1.48e-21,72;CL:0000860,2.48e-20,42;CL:0002057,2.48e-20,42;CL:0000763,8.52e-20,108;CL:0000049,8.52e-20,108;CL:0000473,1.75e-19,48;CL:0000234,1.75e-19,48;CL:0000557,6.57e-19,67;CL:0002009,1.44e-18,61;CL:0000839,4.37e-18,66;CL:0002194,2.04e-17,59;CL:0000576,2.04e-17,59;CL:0000040,2.04e-17,59;CL:0000559,2.04e-17,59;CL:0000542,1.76e-07,53;CL:0000051,1.76e-07,53;CL:0000838,2.05e-07,52 | |||
|ontology_enrichment_development_v019=CL:0002057;1.26e-14;42 | |||
|ontology_enrichment_disease=DOID:162!1.07e-08!235;DOID:0050687!2.46e-08!143;DOID:14566!3.50e-08!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.57e-07,143;DOID:162,5.68e-07,235;DOID:14566,9.91e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0002390!9.19e-15!102;UBERON:0003061!9.19e-15!102;UBERON:0002193!1.15e-13!112;UBERON:0001474!1.33e-13!86;UBERON:0002371!1.48e-13!80;UBERON:0002405!4.29e-10!115;UBERON:0004765!2.90e-09!101;UBERON:0001434!2.90e-09!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.05e-15,98;UBERON:0003061,1.05e-15,98;UBERON:0001474,6.68e-15,82;UBERON:0002371,1.00e-14,76;UBERON:0002193,4.72e-14,108;UBERON:0002405,9.09e-13,93;UBERON:0004765,1.79e-11,90;UBERON:0001434,4.12e-09,100 | |||
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| ||
|short_description=p@chr3:128456699..128456704,+ | |||
}} | }} |
Latest revision as of 15:34, 29 July 2015
Short description: | p@chr3:128456699..128456704, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:128456699..128456704, + |
Coexpression cluster: | C1573_CD14_CD8_Natural_Peripheral_CD4_Basophils_immature |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 9.44e-30 | 136 |
hematopoietic stem cell | 4.57e-29 | 168 |
hematopoietic oligopotent progenitor cell | 1.77e-27 | 161 |
hematopoietic multipotent progenitor cell | 1.77e-27 | 161 |
hematopoietic cell | 2.31e-26 | 177 |
hematopoietic lineage restricted progenitor cell | 1.25e-25 | 120 |
nongranular leukocyte | 5.39e-25 | 115 |
myeloid leukocyte | 1.48e-21 | 72 |
classical monocyte | 2.48e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.48e-20 | 42 |
myeloid cell | 8.52e-20 | 108 |
common myeloid progenitor | 8.52e-20 | 108 |
defensive cell | 1.75e-19 | 48 |
phagocyte | 1.75e-19 | 48 |
granulocyte monocyte progenitor cell | 6.57e-19 | 67 |
macrophage dendritic cell progenitor | 1.44e-18 | 61 |
myeloid lineage restricted progenitor cell | 4.37e-18 | 66 |
monopoietic cell | 2.04e-17 | 59 |
monocyte | 2.04e-17 | 59 |
monoblast | 2.04e-17 | 59 |
promonocyte | 2.04e-17 | 59 |
lymphocyte | 1.76e-07 | 53 |
common lymphoid progenitor | 1.76e-07 | 53 |
lymphoid lineage restricted progenitor cell | 2.05e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.05e-15 | 98 |
blood island | 1.05e-15 | 98 |
bone element | 6.68e-15 | 82 |
bone marrow | 1.00e-14 | 76 |
hemolymphoid system | 4.72e-14 | 108 |
immune system | 9.09e-13 | 93 |
skeletal element | 1.79e-11 | 90 |
skeletal system | 4.12e-09 | 100 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.57e-07 | 143 |
cancer | 5.68e-07 | 235 |
disease of cellular proliferation | 9.91e-07 | 239 |