FFCP PHASE1:Hg19::chr3:174737010..174737023,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:174737010..174737023,+ | |||
|coexpression_cluster_id=C181 | |||
|description=CAGE_peak_at_chr3:174737010..174737023,+ | |description=CAGE_peak_at_chr3:174737010..174737023,+ | ||
|id=chr3:174737010..174737023,+ | |id=chr3:174737010..174737023,+ | ||
|ontology_enrichment_celltype=CL:0002564!7.86e-24!3;CL:0002602!1.18e-16!2;CL:0000153!9.17e-14!9;CL:0000447!9.17e-14!9;CL:0000667!4.71e-12!6;CL:0000058!4.71e-12!6;CL:0000138!4.71e-12!6;CL:0002150!1.95e-10!3;CL:0000861!1.95e-10!3;CL:0000327!6.73e-09!14;CL:0000235!5.69e-07!10;CL:0002552!7.48e-07!5 | |ontology_enrichment_celltype=CL:0002564!7.86e-24!3;CL:0002602!1.18e-16!2;CL:0000153!9.17e-14!9;CL:0000447!9.17e-14!9;CL:0000667!4.71e-12!6;CL:0000058!4.71e-12!6;CL:0000138!4.71e-12!6;CL:0002150!1.95e-10!3;CL:0000861!1.95e-10!3;CL:0000327!6.73e-09!14;CL:0000235!5.69e-07!10;CL:0002552!7.48e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002564;8.26e-98;3!CL:0002602;1.45e-66;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,8.26e-98,3;CL:0002602,1.45e-66,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:4235!1.32e-08!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002242!7.86e-24!3;UBERON:0003068!7.86e-24!3;UBERON:0002328!7.86e-24!3;UBERON:0004880!7.86e-24!3;UBERON:0001737!7.28e-20!9;UBERON:0009568!1.18e-16!2;UBERON:0002216!1.18e-16!2;UBERON:0002209!1.18e-16!2;UBERON:0002213!1.18e-16!2;UBERON:0004267!1.18e-16!2;UBERON:0006444!1.18e-16!2;UBERON:0001995!1.18e-16!2;UBERON:0004715!1.18e-16!2;UBERON:0001468!1.18e-16!2;UBERON:0001130!1.18e-16!2;UBERON:0001066!1.18e-16!2;UBERON:0004905!1.63e-14!5;UBERON:0000982!1.63e-14!5;UBERON:0004770!1.63e-14!5;UBERON:0002090!3.90e-12!6;UBERON:0002418!2.07e-11!3;UBERON:0004755!2.07e-11!3;UBERON:0001557!2.42e-09!19;UBERON:0005705!8.36e-09!1;UBERON:0008193!8.36e-09!1;UBERON:0002514!8.36e-09!1;UBERON:0003462!8.36e-09!1;UBERON:0008001!8.36e-09!1;UBERON:0007914!8.36e-09!1;UBERON:0003457!8.36e-09!1;UBERON:0009292!8.36e-09!1;UBERON:0007375!8.36e-09!1;UBERON:0003323!8.36e-09!1;UBERON:0002397!8.36e-09!1;UBERON:0001709!8.36e-09!1;UBERON:0004066!8.36e-09!1;UBERON:0002244!8.36e-09!1;UBERON:0005620!8.36e-09!1;UBERON:0004068!8.36e-09!1;UBERON:0004362!8.36e-09!1;UBERON:0005174!3.55e-07!5;UBERON:0003586!3.55e-07!5;UBERON:0001137!3.55e-07!5 | |ontology_enrichment_uberon=UBERON:0002242!7.86e-24!3;UBERON:0003068!7.86e-24!3;UBERON:0002328!7.86e-24!3;UBERON:0004880!7.86e-24!3;UBERON:0001737!7.28e-20!9;UBERON:0009568!1.18e-16!2;UBERON:0002216!1.18e-16!2;UBERON:0002209!1.18e-16!2;UBERON:0002213!1.18e-16!2;UBERON:0004267!1.18e-16!2;UBERON:0006444!1.18e-16!2;UBERON:0001995!1.18e-16!2;UBERON:0004715!1.18e-16!2;UBERON:0001468!1.18e-16!2;UBERON:0001130!1.18e-16!2;UBERON:0001066!1.18e-16!2;UBERON:0004905!1.63e-14!5;UBERON:0000982!1.63e-14!5;UBERON:0004770!1.63e-14!5;UBERON:0002090!3.90e-12!6;UBERON:0002418!2.07e-11!3;UBERON:0004755!2.07e-11!3;UBERON:0001557!2.42e-09!19;UBERON:0005705!8.36e-09!1;UBERON:0008193!8.36e-09!1;UBERON:0002514!8.36e-09!1;UBERON:0003462!8.36e-09!1;UBERON:0008001!8.36e-09!1;UBERON:0007914!8.36e-09!1;UBERON:0003457!8.36e-09!1;UBERON:0009292!8.36e-09!1;UBERON:0007375!8.36e-09!1;UBERON:0003323!8.36e-09!1;UBERON:0002397!8.36e-09!1;UBERON:0001709!8.36e-09!1;UBERON:0004066!8.36e-09!1;UBERON:0002244!8.36e-09!1;UBERON:0005620!8.36e-09!1;UBERON:0004068!8.36e-09!1;UBERON:0004362!8.36e-09!1;UBERON:0005174!3.55e-07!5;UBERON:0003586!3.55e-07!5;UBERON:0001137!3.55e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0011135;1.25e-162;5!UBERON:0002216;1.25e-162;5!UBERON:0011134;1.25e-162;5!UBERON:0002209;1.25e-162;5!UBERON:0002213;1.25e-162;5!UBERON:0007844;1.25e-162;5!UBERON:0011138;1.25e-162;5!UBERON:0001130;1.25e-162;5!UBERON:0001066;1.25e-162;5!UBERON:0001468;1.25e-162;5!UBERON:0004905;5.05e-102;8!UBERON:0000982;5.05e-102;8!UBERON:0004770;5.05e-102;8!UBERON:0002242;8.26e-98;3!UBERON:0006444;1.45e-66;2!UBERON:0001995;1.45e-66;2!UBERON:0004715;1.45e-66;2!UBERON:0000075;1.88e-51;16!UBERON:0002418;7.81e-45;3!UBERON:0004755;7.81e-45;3!UBERON:0004765;5.95e-32;26!UBERON:0001434;2.41e-15;36!UBERON:0002204;1.79e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,1.25e-162,5;UBERON:0002216,1.25e-162,5;UBERON:0011134,1.25e-162,5;UBERON:0002209,1.25e-162,5;UBERON:0002213,1.25e-162,5;UBERON:0005856,1.25e-162,5;UBERON:0005866,1.25e-162,5;UBERON:0005863,1.25e-162,5;UBERON:0007844,1.25e-162,5;UBERON:0011138,1.25e-162,5;UBERON:0001130,1.25e-162,5;UBERON:0001066,1.25e-162,5;UBERON:0001468,1.25e-162,5;UBERON:0004905,5.05e-102,8;UBERON:0000982,5.05e-102,8;UBERON:0004770,5.05e-102,8;UBERON:0002242,8.26e-98,3;UBERON:0003068,8.26e-98,3;UBERON:0002328,8.26e-98,3;UBERON:0004880,8.26e-98,3;UBERON:0006444,1.45e-66,2;UBERON:0001995,1.45e-66,2;UBERON:0004715,1.45e-66,2;UBERON:0000075,1.88e-51,16;UBERON:0002418,7.81e-45,3;UBERON:0004755,7.81e-45,3;UBERON:0011137,8.88e-22,14;UBERON:0004765,1.67e-09,90;UBERON:0001434,1.33e-08,100 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,9.77754188384368,6.2965501388304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,0.579386075843295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408308342509787,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.9076596687656,2.00068208423871,2.98391526069709,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146178634172371,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,15.6756980042588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,9.77754188384368,6.2965501388304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,0.579386075843295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408308342509787,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.9076596687656,2.00068208423871,2.98391526069709,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146178634172371,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,15.6756980042588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:174737010..174737023,+ | |short_description=p@chr3:174737010..174737023,+ | ||
}} | }} |
Latest revision as of 18:22, 29 July 2015
Short description: | p@chr3:174737010..174737023, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:174737010..174737023, + |
Coexpression cluster: | C181_liposarcoma_somatostatinoma_neuroblastoma_mesothelioma_nonsmall_small_Alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 8.26e-98 | 3 |
annulus pulposus cell | 1.45e-66 | 2 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 1.25e-162 | 5 |
symphysis | 1.25e-162 | 5 |
nonsynovial joint | 1.25e-162 | 5 |
fibrous joint | 1.25e-162 | 5 |
cartilaginous joint | 1.25e-162 | 5 |
developing mesenchymal condensation | 1.25e-162 | 5 |
pre-cartilage condensation | 1.25e-162 | 5 |
cartilaginous condensation | 1.25e-162 | 5 |
cartilage element | 1.25e-162 | 5 |
post-cranial axial skeletal system | 1.25e-162 | 5 |
vertebral column | 1.25e-162 | 5 |
intervertebral disk | 1.25e-162 | 5 |
intervertebral joint | 1.25e-162 | 5 |
articulation | 5.05e-102 | 8 |
skeletal joint | 5.05e-102 | 8 |
articular system | 5.05e-102 | 8 |
nucleus pulposus | 8.26e-98 | 3 |
axial mesoderm | 8.26e-98 | 3 |
notochord | 8.26e-98 | 3 |
chordamesoderm | 8.26e-98 | 3 |
annulus fibrosus | 1.45e-66 | 2 |
fibrocartilage | 1.45e-66 | 2 |
annulus fibrosus disci intervertebralis | 1.45e-66 | 2 |
subdivision of skeletal system | 1.88e-51 | 16 |
cartilage tissue | 7.81e-45 | 3 |
skeletal tissue | 7.81e-45 | 3 |
axial skeletal system | 8.88e-22 | 14 |
skeletal element | 1.67e-09 | 90 |
skeletal system | 1.33e-08 | 100 |