FFCP PHASE1:Hg19::chr5:149250331..149250335,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:149250331..149250335,- | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_at_chr5:149250331..149250335,- | |description=CAGE_peak_at_chr5:149250331..149250335,- | ||
|id=chr5:149250331..149250335,- | |id=chr5:149250331..149250335,- | ||
|ontology_enrichment_celltype=CL:0000342!7.76e-08!1;CL:0002565!7.76e-08!1 | |ontology_enrichment_celltype=CL:0000342!7.76e-08!1;CL:0002565!7.76e-08!1 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.98e-131;3!UBERON:0005425;1.55e-98;1 | |||
|ontology_enrichment_disease=DOID:8552!1.69e-07!1;DOID:225!2.63e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000941!4.28e-08!1;UBERON:0004904!4.28e-08!1;UBERON:0002464!4.28e-08!1;UBERON:0001021!4.28e-08!1;UBERON:0001785!4.28e-08!1;UBERON:0000989!5.96e-08!1;UBERON:0008811!5.96e-08!1;UBERON:0006258!5.96e-08!1;UBERON:0005876!5.96e-08!1;UBERON:0004874!5.96e-08!1;UBERON:0002506!7.76e-08!1;UBERON:0001769!7.76e-08!1;UBERON:0002135!9.44e-08!1 | |ontology_enrichment_uberon=UBERON:0000941!4.28e-08!1;UBERON:0004904!4.28e-08!1;UBERON:0002464!4.28e-08!1;UBERON:0001021!4.28e-08!1;UBERON:0001785!4.28e-08!1;UBERON:0000989!5.96e-08!1;UBERON:0008811!5.96e-08!1;UBERON:0006258!5.96e-08!1;UBERON:0005876!5.96e-08!1;UBERON:0004874!5.96e-08!1;UBERON:0002506!7.76e-08!1;UBERON:0001769!7.76e-08!1;UBERON:0002135!9.44e-08!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.55e-98;1!UBERON:0001785;1.55e-98;1!UBERON:0002464;1.55e-98;1!UBERON:0004904;1.55e-98;1!UBERON:0001021;1.55e-98;1!UBERON:0003714;3.52e-50;2!UBERON:0005162;3.52e-50;2!UBERON:0000122;3.52e-50;2!UBERON:0000966;4.66e-21;5!UBERON:0005388;4.66e-21;5!UBERON:0001802;4.66e-21;5!UBERON:0002104;4.86e-20;21!UBERON:0001032;1.03e-17;24!UBERON:0004456;1.03e-17;24!UBERON:0000010;2.31e-12;8!UBERON:0004732;5.49e-09;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,9.37e-99,1;UBERON:0001785,9.37e-99,1;UBERON:0002464,9.37e-99,1;UBERON:0004904,9.37e-99,1;UBERON:0001021,9.37e-99,1;UBERON:0003902,9.37e-99,1;UBERON:0005425,9.37e-99,1;UBERON:0000966,2.83e-66,6;UBERON:0005388,2.83e-66,6;UBERON:0001802,2.83e-66,6;UBERON:0003714,2.74e-50,2;UBERON:0005162,2.74e-50,2;UBERON:0000122,2.74e-50,2;UBERON:0001781,5.56e-26,4;UBERON:0000019,5.71e-21,20;UBERON:0000047,5.71e-21,20;UBERON:0010312,5.71e-21,20;UBERON:0004088,5.71e-21,20;UBERON:0010230,5.71e-21,20;UBERON:0003072,5.71e-21,20;UBERON:0004128,5.71e-21,20;UBERON:0003071,5.71e-21,20;UBERON:0000970,4.86e-20,21;UBERON:0002104,4.86e-20,21;UBERON:0001456,3.41e-19,22;UBERON:0000020,1.03e-17,24;UBERON:0001032,1.03e-17,24;UBERON:0004456,1.03e-17,24;UBERON:0005085,5.04e-14,31;UBERON:0000010,2.19e-12,8;UBERON:0001444,2.38e-09,49;UBERON:0004732,5.28e-09,13;UBERON:0000033,2.46e-08,56;UBERON:0000153,1.20e-07,62;UBERON:0007811,1.20e-07,62;UBERON:0003056,1.20e-07,61 | |||
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|short_description=p@chr5:149250331..149250335,- | |short_description=p@chr5:149250331..149250335,- | ||
}} | }} |
Latest revision as of 11:25, 30 July 2015
Short description: | p@chr5:149250331..149250335, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:149250331..149250335, - |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 9.37e-99 | 1 |
cranial nerve | 9.37e-99 | 1 |
nerve trunk | 9.37e-99 | 1 |
nerve connecting eye with brain | 9.37e-99 | 1 |
nerve | 9.37e-99 | 1 |
retinal neural layer | 9.37e-99 | 1 |
presumptive neural retina | 9.37e-99 | 1 |
retina | 2.83e-66 | 6 |
photoreceptor array | 2.83e-66 | 6 |
posterior segment of eyeball | 2.83e-66 | 6 |
neural tissue | 2.74e-50 | 2 |
multi cell component structure | 2.74e-50 | 2 |
neuron projection bundle | 2.74e-50 | 2 |
layer of retina | 5.56e-26 | 4 |
camera-type eye | 5.71e-21 | 20 |
simple eye | 5.71e-21 | 20 |
immature eye | 5.71e-21 | 20 |
ocular region | 5.71e-21 | 20 |
eyeball of camera-type eye | 5.71e-21 | 20 |
optic cup | 5.71e-21 | 20 |
optic vesicle | 5.71e-21 | 20 |
eye primordium | 5.71e-21 | 20 |
eye | 4.86e-20 | 21 |
visual system | 4.86e-20 | 21 |
face | 3.41e-19 | 22 |
sense organ | 1.03e-17 | 24 |
sensory system | 1.03e-17 | 24 |
entire sense organ system | 1.03e-17 | 24 |
ectodermal placode | 5.04e-14 | 31 |
peripheral nervous system | 2.19e-12 | 8 |
subdivision of head | 2.38e-09 | 49 |
segmental subdivision of nervous system | 5.28e-09 | 13 |
head | 2.46e-08 | 56 |
anterior region of body | 1.20e-07 | 62 |
craniocervical region | 1.20e-07 | 62 |
pre-chordal neural plate | 1.20e-07 | 61 |