FFCP PHASE1:Hg19::chr5:82767383..82767423,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=1462 | |EntrezGene=entrezgene:1462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=2464 | |HGNC=HGNC:2464 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=-13bp_to_ENST00000503923_5end | |association_with_transcript=-13bp_to_ENST00000503923_5end | ||
|cluster_id=chr5:82767383..82767423,+ | |||
|coexpression_cluster_id=C4524 | |coexpression_cluster_id=C4524 | ||
|description=CAGE_peak_3_at_VCAN_5end | |description=CAGE_peak_3_at_VCAN_5end | ||
Revision as of 16:54, 30 July 2015
| Short description: | p3@VCAN |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_VCAN_5end |
| Coexpression cluster: | C4524_Fibroblast_Smooth_Preadipocyte_Lens_CD14_mesenchymal_serous |
| Association with transcript: | -13bp_to_ENST00000503923_5end |
| EntrezGene: | 1462 |
| HGNC: | 2464 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@VCAN |
|---|
0
50
100
150
200
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| classical monocyte | 2.53e-14 | 42 |
| CD14-positive, CD16-negative classical monocyte | 2.53e-14 | 42 |
| electrically responsive cell | 3.12e-11 | 61 |
| electrically active cell | 3.12e-11 | 61 |
| defensive cell | 1.72e-10 | 48 |
| phagocyte | 1.72e-10 | 48 |
| fibroblast | 1.98e-10 | 76 |
| stem cell | 1.44e-09 | 441 |
| multi fate stem cell | 1.48e-09 | 427 |
| muscle precursor cell | 1.89e-09 | 58 |
Showing 1 to 10 of 14 entries
| Ontology term | p-value | n |
|---|---|---|
| embryo | 4.29e-12 | 592 |
| mesoderm | 6.73e-12 | 315 |
| mesoderm-derived structure | 6.73e-12 | 315 |
| presumptive mesoderm | 6.73e-12 | 315 |
| musculoskeletal system | 7.89e-12 | 167 |
| developing anatomical structure | 2.60e-10 | 581 |
| skeletal muscle tissue | 3.64e-09 | 62 |
| striated muscle tissue | 3.64e-09 | 62 |
| myotome | 3.64e-09 | 62 |
| structure with developmental contribution from neural crest | 4.50e-09 | 132 |
Showing 1 to 10 of 40 entries
