FFCP PHASE1:Mm9::chr17:29484698..29484737,-: Difference between revisions
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{{FFCP|EntrezGene=56462|HGNC=|MCL_coexpression_id=1536|UniProt=E9QAS0|association_with_transcript=0bp_to_ENSMUST00000114693_5end|description=CAGE_peak_1_at_Mtch1_5end|id=chr17:29484698..29484737,-|ontology_enrichment_celltype=CL:0000055!6.70e-24!50;CL:0000221!5.37e-22!44;CL:0000133!5.37e-22!44;CL:0002319!2.19e-21!43;CL:0002321!4.36e-20!70;CL:0000220!4.36e-20!70;CL:0000393!1.54e-19!39;CL:0000211!1.54e-19!39;CL:0000540!4.14e-17!33;CL:0000047!4.14e-17!33;CL:0000031!4.14e-17!33;CL:0000404!4.14e-17!33;CL:0000117!1.77e-13!23;CL:0000337!1.77e-13!23|ontology_enrichment_celltype_v019_2=CL:0000221,5.37e-22,44;CL:0000133,5.37e-22,44;CL:0002319,2.19e-21,43;CL:0002321,4.36e-20,70;CL:0000393,1.54e-19,39;CL:0000211,1.54e-19,39;CL:0000540,4.14e-17,33;CL:0000047,4.14e-17,33;CL:0000031,4.14e-17,33;CL:0000404,4.14e-17,33;CL:0000117,1.77e-13,23;CL:0000337,1.77e-13,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.25e-26!73;UBERON:0005743!1.25e-26!73;UBERON:0000073!6.88e-26!75;UBERON:0001016!6.88e-26!75;UBERON:0004121!1.25e-18!102;UBERON:0000924!1.25e-18!102;UBERON:0006601!1.25e-18!102;UBERON:0001049!6.90e-17!52;UBERON:0005068!6.90e-17!52;UBERON:0006241!6.90e-17!52;UBERON:0007135!6.90e-17!52;UBERON:0002616!9.29e-15!49;UBERON:0002346!1.39e-14!71;UBERON:0003075!1.39e-14!71;UBERON:0007284!1.39e-14!71;UBERON:0000955!1.70e-14!50;UBERON:0006238!1.70e-14!50;UBERON:0003080!3.36e-13!40;UBERON:0002780!7.30e-13!39;UBERON:0001890!7.30e-13!39;UBERON:0006240!7.30e-13!39;UBERON:0000033!7.52e-13!63;UBERON:0002020!9.05e-13!34;UBERON:0003056!1.17e-11!49;UBERON:0000025!3.00e-10!114;UBERON:0002791!5.70e-10!29;UBERON:0003528!5.70e-10!29;UBERON:0001893!5.70e-10!29;UBERON:0004111!2.35e-09!122|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.25e-26,73;UBERON:0001016,6.88e-26,75;UBERON:0004121,3.05e-20,95;UBERON:0000924,3.05e-20,95;UBERON:0006601,3.05e-20,95;UBERON:0000073,1.10e-17,54;UBERON:0010314,3.39e-17,92;UBERON:0001049,6.90e-17,52;UBERON:0005068,6.90e-17,52;UBERON:0006241,6.90e-17,52;UBERON:0007135,6.90e-17,52;UBERON:0002346,1.65e-16,64;UBERON:0003075,1.65e-16,64;UBERON:0007284,1.65e-16,64;UBERON:0010371,1.35e-14,73;UBERON:0002616,8.54e-14,46;UBERON:0000955,1.56e-13,47;UBERON:0006238,1.56e-13,47;UBERON:0003080,3.36e-13,40;UBERON:0002780,7.30e-13,39;UBERON:0001890,7.30e-13,39;UBERON:0006240,7.30e-13,39;UBERON:0002020,9.05e-13,34;UBERON:0003056,1.17e-11,49;UBERON:0000025,3.00e-10,114;UBERON:0003528,5.70e-10,29;UBERON:0002791,5.70e-10,29;UBERON:0001893,5.70e-10,29;UBERON:0004111,2.35e-09,122|phase1_expression=105.21779254785,83.7540978334467,121.029797677617,113.121615028754,144.758865954494,107.778492567433,94.6131194411879,22.9839515726006,9.29205566201001,7.2560003159818,10.4442960617558,13.6410391882025,17.2912737230518,14.1621051918776,22.9845735652807,20.0450514715928,17.4890469532037,34.0699138586897,30.5765186940797,33.5267824920444,69.9906277943304,66.4256463533923,51.9787580386481,49.7576434887495,52.5347253643819,104.510217468934,101.229069097383,71.5364492517152,76.1993912020059,83.9260332100569,84.7010550703264,29.211410979143,38.1340168302433,31.6963362030877,79.4341954316005,83.6160266153216,90.8553635367543,53.1535171035873,65.6321689399992,41.8818995179039,49.4114449946052,53.2775478267588,40.7828696546169,117.084040717287,137.568495664881,135.273956343159,377.895019320103,204.071546372098,178.385180380391,158.84922754369,156.36483295553,198.378538823661,25.6707387268337,26.8383992544197,17.1407837562657,118.0820811405,126.074713573053,148.513562575903,200.900245633581,149.704447133985,204.727543332496,306.993146054634,229.438057396674,146.683653916868,160.19635073585,160.568505977819,189.64686995815,237.062694383399,166.110758918181,169.432452606272,180.458816839486,210.810426490007,184.204363153646,147.35643145559,124.790803265744,138.802036778113,109.014722189395,131.134896213488,120.427522072895,208.248448325976,173.552059913771,200.551647664353,163.601237414809,181.772323040233,156.465405723454,144.957264053044,153.619043582232,163.658713434614,63.3070976265419,90.0812996472883,75.6546315511379,93.7862025909711,31.2786813505565,29.6836755400799,39.6363614643078,39.8743929516629,58.284434354677,117.256061933704,132.750648352066,140.982490229626,159.293907767426,114.210564898743,112.114305470924,142.213340630666,81.4006314202165,71.7008419294529,79.367337867321,53.8947912273963,28.2242293175417,66.056751883847,104.958622693512,69.1136635768561,88.5563509463265,68.4280788108906,57.1481116679525,80.929284816311,47.9558237404685,79.5296463059514,33.6152009740952,94.471840369287,59.6272099843063,43.63877278217,37.2783522436244,49.1871738979399,74.7724743324035,53.6459815938042,53.6771757786523,50.9917321344397,43.5850878860612,121.480208557311,140.452685065318,143.622924465004,107.249605558635,113.793378511997,145.451631191692,134.173524557036,124.753220716637,59.5909389222346,168.818802633695,49.2433942774349,72.477086730226,124.606940602942,110.73820983029,90.42289070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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:56462 | |||
|HGNC= | |||
|MCL_coexpression_id=1536 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9QAS0 | |||
|association_with_transcript=0bp_to_ENSMUST00000114693_5end | |||
|cluster_id=chr17:29484698..29484737,- | |||
|description=CAGE_peak_1_at_Mtch1_5end | |||
|id=chr17:29484698..29484737,- | |||
|ontology_enrichment_celltype=CL:0000055!6.70e-24!50;CL:0000221!5.37e-22!44;CL:0000133!5.37e-22!44;CL:0002319!2.19e-21!43;CL:0002321!4.36e-20!70;CL:0000220!4.36e-20!70;CL:0000393!1.54e-19!39;CL:0000211!1.54e-19!39;CL:0000540!4.14e-17!33;CL:0000047!4.14e-17!33;CL:0000031!4.14e-17!33;CL:0000404!4.14e-17!33;CL:0000117!1.77e-13!23;CL:0000337!1.77e-13!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.37e-22,44;CL:0000133,5.37e-22,44;CL:0002319,2.19e-21,43;CL:0002321,4.36e-20,70;CL:0000393,1.54e-19,39;CL:0000211,1.54e-19,39;CL:0000540,4.14e-17,33;CL:0000047,4.14e-17,33;CL:0000031,4.14e-17,33;CL:0000404,4.14e-17,33;CL:0000117,1.77e-13,23;CL:0000337,1.77e-13,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.25e-26!73;UBERON:0005743!1.25e-26!73;UBERON:0000073!6.88e-26!75;UBERON:0001016!6.88e-26!75;UBERON:0004121!1.25e-18!102;UBERON:0000924!1.25e-18!102;UBERON:0006601!1.25e-18!102;UBERON:0001049!6.90e-17!52;UBERON:0005068!6.90e-17!52;UBERON:0006241!6.90e-17!52;UBERON:0007135!6.90e-17!52;UBERON:0002616!9.29e-15!49;UBERON:0002346!1.39e-14!71;UBERON:0003075!1.39e-14!71;UBERON:0007284!1.39e-14!71;UBERON:0000955!1.70e-14!50;UBERON:0006238!1.70e-14!50;UBERON:0003080!3.36e-13!40;UBERON:0002780!7.30e-13!39;UBERON:0001890!7.30e-13!39;UBERON:0006240!7.30e-13!39;UBERON:0000033!7.52e-13!63;UBERON:0002020!9.05e-13!34;UBERON:0003056!1.17e-11!49;UBERON:0000025!3.00e-10!114;UBERON:0002791!5.70e-10!29;UBERON:0003528!5.70e-10!29;UBERON:0001893!5.70e-10!29;UBERON:0004111!2.35e-09!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.25e-26,73;UBERON:0001016,6.88e-26,75;UBERON:0004121,3.05e-20,95;UBERON:0000924,3.05e-20,95;UBERON:0006601,3.05e-20,95;UBERON:0000073,1.10e-17,54;UBERON:0010314,3.39e-17,92;UBERON:0001049,6.90e-17,52;UBERON:0005068,6.90e-17,52;UBERON:0006241,6.90e-17,52;UBERON:0007135,6.90e-17,52;UBERON:0002346,1.65e-16,64;UBERON:0003075,1.65e-16,64;UBERON:0007284,1.65e-16,64;UBERON:0010371,1.35e-14,73;UBERON:0002616,8.54e-14,46;UBERON:0000955,1.56e-13,47;UBERON:0006238,1.56e-13,47;UBERON:0003080,3.36e-13,40;UBERON:0002780,7.30e-13,39;UBERON:0001890,7.30e-13,39;UBERON:0006240,7.30e-13,39;UBERON:0002020,9.05e-13,34;UBERON:0003056,1.17e-11,49;UBERON:0000025,3.00e-10,114;UBERON:0003528,5.70e-10,29;UBERON:0002791,5.70e-10,29;UBERON:0001893,5.70e-10,29;UBERON:0004111,2.35e-09,122 | |||
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| |||
|short_description=p1@Mtch1 | |||
}} |
Revision as of 13:48, 4 August 2015
Short description: | p1@Mtch1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mtch1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1536 |
Association with transcript: | 0bp_to_ENSMUST00000114693_5end |
EntrezGene: | 56462 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.37e-22 | 44 |
neurectodermal cell | 5.37e-22 | 44 |
neural cell | 2.19e-21 | 43 |
embryonic cell | 4.36e-20 | 70 |
electrically responsive cell | 1.54e-19 | 39 |
electrically active cell | 1.54e-19 | 39 |
neuron | 4.14e-17 | 33 |
neuronal stem cell | 4.14e-17 | 33 |
neuroblast | 4.14e-17 | 33 |
electrically signaling cell | 4.14e-17 | 33 |
CNS neuron (sensu Vertebrata) | 1.77e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.77e-13 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.25e-26 | 73 |
nervous system | 6.88e-26 | 75 |
ectoderm-derived structure | 3.05e-20 | 95 |
ectoderm | 3.05e-20 | 95 |
presumptive ectoderm | 3.05e-20 | 95 |
regional part of nervous system | 1.10e-17 | 54 |
structure with developmental contribution from neural crest | 3.39e-17 | 92 |
neural tube | 6.90e-17 | 52 |
neural rod | 6.90e-17 | 52 |
future spinal cord | 6.90e-17 | 52 |
neural keel | 6.90e-17 | 52 |
neurectoderm | 1.65e-16 | 64 |
neural plate | 1.65e-16 | 64 |
presumptive neural plate | 1.65e-16 | 64 |
ecto-epithelium | 1.35e-14 | 73 |
regional part of brain | 8.54e-14 | 46 |
brain | 1.56e-13 | 47 |
future brain | 1.56e-13 | 47 |
anterior neural tube | 3.36e-13 | 40 |
regional part of forebrain | 7.30e-13 | 39 |
forebrain | 7.30e-13 | 39 |
future forebrain | 7.30e-13 | 39 |
gray matter | 9.05e-13 | 34 |
pre-chordal neural plate | 1.17e-11 | 49 |
tube | 3.00e-10 | 114 |
brain grey matter | 5.70e-10 | 29 |
regional part of telencephalon | 5.70e-10 | 29 |
telencephalon | 5.70e-10 | 29 |
anatomical conduit | 2.35e-09 | 122 |