FFCP PHASE1:Mm9::chr2:180689352..180689375,-: Difference between revisions
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{{FFCP|EntrezGene=58237|HGNC=|MCL_coexpression_id=1536|UniProt=F6S2R0|association_with_transcript=23bp_to_ENSMUST00000148905_5end|description=CAGE_peak_1_at_Nkain4_5end|id=chr2:180689352..180689375,-|ontology_enrichment_celltype=CL:0000221!5.88e-10!44;CL:0000133!5.88e-10!44;CL:0000055!7.59e-10!50;CL:0002319!1.52e-09!43;CL:0000393!1.28e-07!39;CL:0000211!1.28e-07!39;CL:0000540!3.14e-07!33;CL:0000047!3.14e-07!33;CL:0000031!3.14e-07!33;CL:0000404!3.14e-07!33|ontology_enrichment_celltype_v019_2=CL:0000221,7.60e-10,44;CL:0000133,7.60e-10,44;CL:0002319,1.97e-09,43;CL:0000393,1.37e-07,39;CL:0000211,1.37e-07,39;CL:0000540,2.68e-07,33;CL:0000047,2.68e-07,33;CL:0000031,2.68e-07,33;CL:0000404,2.68e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.01e-19!73;UBERON:0005743!1.01e-19!73;UBERON:0000073!2.43e-18!75;UBERON:0001016!2.43e-18!75;UBERON:0000025!1.34e-16!114;UBERON:0004111!5.61e-16!122;UBERON:0004121!8.29e-14!102;UBERON:0000924!8.29e-14!102;UBERON:0006601!8.29e-14!102;UBERON:0002346!7.79e-13!71;UBERON:0003075!7.79e-13!71;UBERON:0007284!7.79e-13!71;UBERON:0001049!5.36e-12!52;UBERON:0005068!5.36e-12!52;UBERON:0006241!5.36e-12!52;UBERON:0007135!5.36e-12!52;UBERON:0000955!7.41e-12!50;UBERON:0006238!7.41e-12!50;UBERON:0002616!1.21e-11!49;UBERON:0000033!4.29e-11!63;UBERON:0000480!5.52e-10!308;UBERON:0000467!5.52e-10!308;UBERON:0002048!3.24e-09!14;UBERON:0000117!3.24e-09!14;UBERON:0000171!3.24e-09!14;UBERON:0000170!3.24e-09!14;UBERON:0005597!3.24e-09!14;UBERON:0000118!3.24e-09!14;UBERON:0000468!3.71e-09!333;UBERON:0000922!3.96e-08!328;UBERON:0000477!4.26e-08!154;UBERON:0000923!8.26e-08!314;UBERON:0005291!8.26e-08!314;UBERON:0006598!8.26e-08!314;UBERON:0002532!8.26e-08!314;UBERON:0003056!1.67e-07!49;UBERON:0003080!1.81e-07!40;UBERON:0002020!2.29e-07!34;UBERON:0002780!5.87e-07!39;UBERON:0001890!5.87e-07!39;UBERON:0006240!5.87e-07!39;UBERON:0000464!6.43e-07!57;UBERON:0002050!6.86e-07!317;UBERON:0005423!6.86e-07!317|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.59e-20,73;UBERON:0001016,4.08e-18,75;UBERON:0010314,1.78e-16,92;UBERON:0000025,7.43e-16,114;UBERON:0004111,3.99e-15,122;UBERON:0000073,4.74e-13,54;UBERON:0004121,8.26e-13,95;UBERON:0000924,8.26e-13,95;UBERON:0006601,8.26e-13,95;UBERON:0002346,1.50e-12,64;UBERON:0003075,1.50e-12,64;UBERON:0007284,1.50e-12,64;UBERON:0001049,5.96e-12,52;UBERON:0005068,5.96e-12,52;UBERON:0006241,5.96e-12,52;UBERON:0007135,5.96e-12,52;UBERON:0000955,3.00e-10,47;UBERON:0006238,3.00e-10,47;UBERON:0002616,4.85e-10,46;UBERON:0010371,1.10e-09,73;UBERON:0002048,2.61e-09,14;UBERON:0000117,2.61e-09,14;UBERON:0000171,2.61e-09,14;UBERON:0000170,2.61e-09,14;UBERON:0005597,2.61e-09,14;UBERON:0000118,2.61e-09,14;UBERON:0002020,1.94e-07,34;UBERON:0003080,2.16e-07,40;UBERON:0003056,2.76e-07,49;UBERON:0005157,4.67e-07,20;UBERON:0002780,7.00e-07,39;UBERON:0001890,7.00e-07,39;UBERON:0006240,7.00e-07,39|phase1_expression=9.92922852049723,8.02643437570531,2.27499619694768,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.99406927420056,0,0,0,0,4.01962374880514,4.30761996159075,0.861884930743556,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,81.0775507762718,92.0502535473192,7.89251034295231,122.053049718294,34.665999864491,11.4236815021925,15.748821825017,12.0388322597812,23.0004102983955,0,0,0,0.257259436035947,4.29800159908135,4.64104883049698,15.3760510253294,14.8117474196169,15.8457850876545,5.08266798103698,5.33576877666684,0.449949858640699,0,0,30.5592112728773,83.3753722547773,3.83651565541367,4.72520784160917,3.57552434297349,18.2816630018434,13.693849539,3.67472397644862,2.87536413054709,6.43453150627015,34.1359231098105,20.9407234459708,27.4955694528676,7.64940468835124,7.68496206260241,2.08365348222704,31.2684958881547,54.587973173073,36.0603864753272,8.54422897873636,9.11178757114259,15.8439528951505,0.075726193333184,0.302286240427142,2.89864488701678,4.30211938490693,0,0.539703191637817,0,0,2.66844398250329,0,0,0,18.0279577314151,0,0,0,0,0,0,2.39786147410026,0,4.15637989381509,4.16364784238726,8.22056791442781,7.37969591219387,6.48107354376277,8.93674174231356,4.90099706185734,0.247194967734374,21.9791022518266,0,0.647067399789637,0,0,1.86391761218122,11.7112318804619,19.4785437336513,1.53274233125155,0,0,0,50.1798642006156,18.3000241127451,11.1832373380449,14.9488915365358,17.6443665557928,36.9862719316017,28.8789448260609,27.700306967286,2.73695335342205,2.0217820674694,0.841767423545896,2.99277018814219,6.66716102857071,7.74267158163002,9.79581315932148,9.32100038373192,13.3238269096244,12.6497328155634,2.32833033665114,0,0.756424320671277,1.23165786914764,0.876782929710299,0,1.39300866608867,0.823128545631774,8.55847347319521,0,0,0,6.42089894860056,11.4917769390737,13.6847166710371,12.5474709860161,12.7896750635812,13.884040159864,16.509910077279,13.413670069981,8.29033930806903,11.1900697941167,13.6258995185649,9.8903947645944,11.2573990317506,26.126463719635,16.238976670005,17.2437757822584,10.3933658503077,0,2.38005509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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:58237 | |||
|HGNC= | |||
|MCL_coexpression_id=1536 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:F6S2R0 | |||
|association_with_transcript=23bp_to_ENSMUST00000148905_5end | |||
|cluster_id=chr2:180689352..180689375,- | |||
|description=CAGE_peak_1_at_Nkain4_5end | |||
|id=chr2:180689352..180689375,- | |||
|ontology_enrichment_celltype=CL:0000221!5.88e-10!44;CL:0000133!5.88e-10!44;CL:0000055!7.59e-10!50;CL:0002319!1.52e-09!43;CL:0000393!1.28e-07!39;CL:0000211!1.28e-07!39;CL:0000540!3.14e-07!33;CL:0000047!3.14e-07!33;CL:0000031!3.14e-07!33;CL:0000404!3.14e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,7.60e-10,44;CL:0000133,7.60e-10,44;CL:0002319,1.97e-09,43;CL:0000393,1.37e-07,39;CL:0000211,1.37e-07,39;CL:0000540,2.68e-07,33;CL:0000047,2.68e-07,33;CL:0000031,2.68e-07,33;CL:0000404,2.68e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.01e-19!73;UBERON:0005743!1.01e-19!73;UBERON:0000073!2.43e-18!75;UBERON:0001016!2.43e-18!75;UBERON:0000025!1.34e-16!114;UBERON:0004111!5.61e-16!122;UBERON:0004121!8.29e-14!102;UBERON:0000924!8.29e-14!102;UBERON:0006601!8.29e-14!102;UBERON:0002346!7.79e-13!71;UBERON:0003075!7.79e-13!71;UBERON:0007284!7.79e-13!71;UBERON:0001049!5.36e-12!52;UBERON:0005068!5.36e-12!52;UBERON:0006241!5.36e-12!52;UBERON:0007135!5.36e-12!52;UBERON:0000955!7.41e-12!50;UBERON:0006238!7.41e-12!50;UBERON:0002616!1.21e-11!49;UBERON:0000033!4.29e-11!63;UBERON:0000480!5.52e-10!308;UBERON:0000467!5.52e-10!308;UBERON:0002048!3.24e-09!14;UBERON:0000117!3.24e-09!14;UBERON:0000171!3.24e-09!14;UBERON:0000170!3.24e-09!14;UBERON:0005597!3.24e-09!14;UBERON:0000118!3.24e-09!14;UBERON:0000468!3.71e-09!333;UBERON:0000922!3.96e-08!328;UBERON:0000477!4.26e-08!154;UBERON:0000923!8.26e-08!314;UBERON:0005291!8.26e-08!314;UBERON:0006598!8.26e-08!314;UBERON:0002532!8.26e-08!314;UBERON:0003056!1.67e-07!49;UBERON:0003080!1.81e-07!40;UBERON:0002020!2.29e-07!34;UBERON:0002780!5.87e-07!39;UBERON:0001890!5.87e-07!39;UBERON:0006240!5.87e-07!39;UBERON:0000464!6.43e-07!57;UBERON:0002050!6.86e-07!317;UBERON:0005423!6.86e-07!317 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.59e-20,73;UBERON:0001016,4.08e-18,75;UBERON:0010314,1.78e-16,92;UBERON:0000025,7.43e-16,114;UBERON:0004111,3.99e-15,122;UBERON:0000073,4.74e-13,54;UBERON:0004121,8.26e-13,95;UBERON:0000924,8.26e-13,95;UBERON:0006601,8.26e-13,95;UBERON:0002346,1.50e-12,64;UBERON:0003075,1.50e-12,64;UBERON:0007284,1.50e-12,64;UBERON:0001049,5.96e-12,52;UBERON:0005068,5.96e-12,52;UBERON:0006241,5.96e-12,52;UBERON:0007135,5.96e-12,52;UBERON:0000955,3.00e-10,47;UBERON:0006238,3.00e-10,47;UBERON:0002616,4.85e-10,46;UBERON:0010371,1.10e-09,73;UBERON:0002048,2.61e-09,14;UBERON:0000117,2.61e-09,14;UBERON:0000171,2.61e-09,14;UBERON:0000170,2.61e-09,14;UBERON:0005597,2.61e-09,14;UBERON:0000118,2.61e-09,14;UBERON:0002020,1.94e-07,34;UBERON:0003080,2.16e-07,40;UBERON:0003056,2.76e-07,49;UBERON:0005157,4.67e-07,20;UBERON:0002780,7.00e-07,39;UBERON:0001890,7.00e-07,39;UBERON:0006240,7.00e-07,39 | |||
|phase1_expression=9.92922852049723,8.02643437570531,2.27499619694768,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.99406927420056,0,0,0,0,4.01962374880514,4.30761996159075,0.861884930743556,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,81.0775507762718,92.0502535473192,7.89251034295231,122.053049718294,34.665999864491,11.4236815021925,15.748821825017,12.0388322597812,23.0004102983955,0,0,0,0.257259436035947,4.29800159908135,4.64104883049698,15.3760510253294,14.8117474196169,15.8457850876545,5.08266798103698,5.33576877666684,0.449949858640699,0,0,30.5592112728773,83.3753722547773,3.83651565541367,4.72520784160917,3.57552434297349,18.2816630018434,13.693849539,3.67472397644862,2.87536413054709,6.43453150627015,34.1359231098105,20.9407234459708,27.4955694528676,7.64940468835124,7.68496206260241,2.08365348222704,31.2684958881547,54.587973173073,36.0603864753272,8.54422897873636,9.11178757114259,15.8439528951505,0.075726193333184,0.302286240427142,2.89864488701678,4.30211938490693,0,0.539703191637817,0,0,2.66844398250329,0,0,0,18.0279577314151,0,0,0,0,0,0,2.39786147410026,0,4.15637989381509,4.16364784238726,8.22056791442781,7.37969591219387,6.48107354376277,8.93674174231356,4.90099706185734,0.247194967734374,21.9791022518266,0,0.647067399789637,0,0,1.86391761218122,11.7112318804619,19.4785437336513,1.53274233125155,0,0,0,50.1798642006156,18.3000241127451,11.1832373380449,14.9488915365358,17.6443665557928,36.9862719316017,28.8789448260609,27.700306967286,2.73695335342205,2.0217820674694,0.841767423545896,2.99277018814219,6.66716102857071,7.74267158163002,9.79581315932148,9.32100038373192,13.3238269096244,12.6497328155634,2.32833033665114,0,0.756424320671277,1.23165786914764,0.876782929710299,0,1.39300866608867,0.823128545631774,8.55847347319521,0,0,0,6.42089894860056,11.4917769390737,13.6847166710371,12.5474709860161,12.7896750635812,13.884040159864,16.509910077279,13.413670069981,8.29033930806903,11.1900697941167,13.6258995185649,9.8903947645944,11.2573990317506,26.126463719635,16.238976670005,17.2437757822584,10.3933658503077,0,2.3800550999719,5.54549451391608,7.19933682767359,5.67016829817211,5.44545516483025,4.44756087689741,7.79925067061493,4.74529061544512,10.5407331023367,8.54539709920916,6.36660710531683,5.26403035221624,1.79763881730844,2.59365659849633,2.98711909881551,11.7594098590911,6.51216521875454,5.63538678365402,4.48032921259691,4.84881217919064,4.41855665309007,4.04713837595247,1.03327103585722,1.09899109488962,1.60416313098341,0.592905254174298,0.333690211432188,1.96558995113203,0.674586337154561,0.405720242777006,0.72353147925725,2.5462585178142,2.30156909960649,1.29708181420028,3.0201755450689,2.87536413054709,2.97712758134803,3.12037673114561,2.27320990152401,4.12614051100398,1.92977408545347,27.5282253348241,22.3599865889172,20.6965520081373,23.2550767512008,19.0099101113687,17.9231695462743,26.4228441383475,19.9036320814955,26.4827042098401,26.575762757853,34.2827752613597,32.6087996284319,37.1272711011676,37.31945711403,0,0,0,0,18.3027672586083,22.9734905720718,0,0.504941854408746,9.4652465824877,10.9322848403059,19.8189525914175,12.6653462914853,19.1606859710859,15.286132662597,4.04810701674894,7.3063964477828,11.8586333383957,10.9249247583414,5.96148357874728,29.0246933977626,18.5691133663077,8.74341651754438,13.2745138339963,17.2374251670037,11.1859716076958,6.97838795096823,13.8791889653963,11.0676653259814,9.30341855405596,18.1766864738753,17.1118741624666,11.3773232856894,12.6502330289999,8.25084345985495,0.680879211507576,4.14140516272013,9.31382523235832,4.92975180572662,6.0295679438373,8.38333442729732,9.87294123612726,10.3518082698964,0,0.63549621259146,2.20528398054962,1.6488625294148,2.26050197374268,1.08563264870681,0.477489376012546,0.820704498725306,5.82961673259701,22.4364615432717,1.02522528478712,7.42992724667601,4.44466865687308,1.50694765603753,0.683471138605126,0.686334519619568,0,0,0,6.68269432610579,6.01038387804157,10.3692928234693,9.82848601478391,12.3362094648537,10.4814030598165,14.8350781023303,12.1500579916244,11.5172614472973,2.07383957266869,0,2.25477175473676,7.7748603942869,9.43113395605456,9.33365704051429,11.7535439364735,13.685446164753,13.1440107283244,7.94246747548096,5.34782656571125,2.41584120826006,1.44015003128933,2.21207784439725,6.68993210457542,10.1683847593179,8.05509102462329,5.90788095702689,2.58285761215644,3.846254384639,3.98761723371358,3.63479219813331,2.209997392995,2.41982844328417,1.75424185331554,1.15454209968395,1.40252282617883,0.226730383615211,0,0,0.503653849092235,21.4440449375731,7.50729901804728,2.38097111547445,0.214368379079066,5.517293144389,12.9892923801925,13.8097570952153,11.4579102687879,13.5764014051513,10.2762377965596,8.3093328712867,15.5255175053315,13.0593148935024,10.4222754066367,18.1216109113137,2.07574695168353,6.3843979744165,5.46347538413229,3.64660075602441,2.93458427679175,2.20612210140017,3.55594764482584,5.15087643097235,3.53011130550997,6.57012750585873,3.29523089857312,3.77252682772152,3.277452761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| |||
|short_description=p1@Nkain4 | |||
}} |
Revision as of 17:49, 4 August 2015
Short description: | p1@Nkain4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nkain4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1536 |
Association with transcript: | 23bp_to_ENSMUST00000148905_5end |
EntrezGene: | 58237 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 7.60e-10 | 44 |
neurectodermal cell | 7.60e-10 | 44 |
neural cell | 1.97e-09 | 43 |
electrically responsive cell | 1.37e-07 | 39 |
electrically active cell | 1.37e-07 | 39 |
neuron | 2.68e-07 | 33 |
neuronal stem cell | 2.68e-07 | 33 |
neuroblast | 2.68e-07 | 33 |
electrically signaling cell | 2.68e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.59e-20 | 73 |
nervous system | 4.08e-18 | 75 |
structure with developmental contribution from neural crest | 1.78e-16 | 92 |
tube | 7.43e-16 | 114 |
anatomical conduit | 3.99e-15 | 122 |
regional part of nervous system | 4.74e-13 | 54 |
ectoderm-derived structure | 8.26e-13 | 95 |
ectoderm | 8.26e-13 | 95 |
presumptive ectoderm | 8.26e-13 | 95 |
neurectoderm | 1.50e-12 | 64 |
neural plate | 1.50e-12 | 64 |
presumptive neural plate | 1.50e-12 | 64 |
neural tube | 5.96e-12 | 52 |
neural rod | 5.96e-12 | 52 |
future spinal cord | 5.96e-12 | 52 |
neural keel | 5.96e-12 | 52 |
brain | 3.00e-10 | 47 |
future brain | 3.00e-10 | 47 |
regional part of brain | 4.85e-10 | 46 |
ecto-epithelium | 1.10e-09 | 73 |
lung | 2.61e-09 | 14 |
respiratory tube | 2.61e-09 | 14 |
respiration organ | 2.61e-09 | 14 |
pair of lungs | 2.61e-09 | 14 |
lung primordium | 2.61e-09 | 14 |
lung bud | 2.61e-09 | 14 |
gray matter | 1.94e-07 | 34 |
anterior neural tube | 2.16e-07 | 40 |
pre-chordal neural plate | 2.76e-07 | 49 |
epithelial fold | 4.67e-07 | 20 |
regional part of forebrain | 7.00e-07 | 39 |
forebrain | 7.00e-07 | 39 |
future forebrain | 7.00e-07 | 39 |