FFCP PHASE1:Mm9::chr4:129732334..129732345,+: Difference between revisions
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{{FFCP|EntrezGene=107581|HGNC=|MCL_coexpression_id=107|UniProt=|association_with_transcript=35bp_to_ENSMUST00000154441_5end|description=CAGE_peak_8_at_Col16a1_5end|id=chr4:129732334..129732345,+|ontology_enrichment_celltype=CL:0002319!1.13e-16!43;CL:0000221!4.36e-16!44;CL:0000133!4.36e-16!44;CL:0000107!3.63e-13!9;CL:0000540!4.15e-13!33;CL:0000047!4.15e-13!33;CL:0000031!4.15e-13!33;CL:0000404!4.15e-13!33;CL:0000055!4.31e-13!50;CL:0000393!4.54e-10!39;CL:0000211!4.54e-10!39;CL:0002321!7.47e-08!70;CL:0000220!7.47e-08!70|ontology_enrichment_celltype_v019_2=CL:0000107,6.36e-52,9;CL:0002319,1.09e-23,43;CL:0000221,3.92e-23,44;CL:0000133,3.92e-23,44;CL:0000217,1.14e-15,2;CL:0000328,1.14e-15,2;CL:0002573,1.14e-15,2;CL:0002376,1.14e-15,2;CL:0000218,1.14e-15,2;CL:0000692,1.14e-15,2;CL:0002377,1.14e-15,2;CL:0002375,1.14e-15,2;CL:0000878,4.36e-15,2;CL:0000129,4.36e-15,2;CL:0002321,3.22e-14,70;CL:0000540,8.05e-14,33;CL:0000047,8.05e-14,33;CL:0000031,8.05e-14,33;CL:0000404,8.05e-14,33;CL:0000333,7.44e-12,10;CL:0000095,7.44e-12,10;CL:0000243,7.44e-12,10;CL:0000123,7.44e-12,10;CL:0000125,7.44e-12,10;CL:0000030,7.44e-12,10;CL:0000339,7.44e-12,10;CL:0000393,1.33e-11,39;CL:0000211,1.33e-11,39;CL:0000215,9.09e-11,3;CL:0002194,5.19e-08,4;CL:0000766,5.19e-08,4;CL:0000234,5.19e-08,4;CL:0000576,5.19e-08,4;CL:0000235,5.19e-08,4;CL:0000864,5.19e-08,4;CL:0002009,5.19e-08,4;CL:0000040,5.19e-08,4;CL:0000559,5.19e-08,4;CL:0000723,3.29e-07,91;CL:0000048,3.29e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000010!9.18e-16!11;UBERON:0002410!3.63e-13!9;UBERON:0004121!1.66e-10!102;UBERON:0000924!1.66e-10!102;UBERON:0006601!1.66e-10!102;UBERON:0000073!3.46e-10!75;UBERON:0001016!3.46e-10!75;UBERON:0001017!9.62e-09!73;UBERON:0005743!9.62e-09!73|ontology_enrichment_uberon_v019_2=UBERON:0000010,4.22e-66,11;UBERON:0002410,6.36e-52,9;UBERON:0000011,1.42e-23,3;UBERON:0000013,1.31e-22,3;UBERON:0001016,3.30e-13,75;UBERON:0010313,1.42e-10,3;UBERON:0002342,1.42e-10,3;UBERON:0002005,1.42e-10,3;UBERON:0005428,1.42e-10,3;UBERON:0005062,1.42e-10,3;UBERON:0004121,3.22e-10,95;UBERON:0000924,3.22e-10,95;UBERON:0006601,3.22e-10,95;UBERON:0001017,3.15e-09,73|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439372365468944,0,0.279972843250725,0,0,0,0,0,0,0,0.606949382578793,0,0,0,0,0,0,0,1.19840044207362,1.53687322128622,0.103689612308478,0.270011876663381,0.420649922702764,0,0.662605622854841,0,0,0,0,0.127687338085188,0.153606533256243,0,0.0914876436024097,0,0.279182999001381,0,0.15279824777681,0,0.142371680799103,0.186399445825301,2.95332153999418,2.26714680320357,0,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0,0,0.647067399789637,0,0,0,0,0,0,0,0,0,0,0,0.376963056338593,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0.150704817835715,0,0.12811372028485,0,0.517406741478031,0,0,0,0,0.278047249225598,0.348252166522167,0.61734640922383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0.162137619091711,0,0,0,0,0,0,0,0,0,0,0,0.22237804384487,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234690248288502,0,0.238043640886014,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0.80275294993896,0.586058432961016,0,0,0.94652465824877,1.56175497718655,2.15423397732799,3.82350076724083,4.01037613348309,6.51076020814315,3.23848561339915,1.16902343164525,3.95287777946523,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.241251699712623,0.358117032009409,0.164140899745061,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0.247960367176008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0.386379188064381,0,0.183151624267265,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0.209613162627982,0.183843508450014,0.222246727801615,0,0,0,0,0.188626341386076,0,0,0.114870937911227,0,0.115884325944855,0.192909220463705,0,0.294397840268795,0,0.177475806159338,0,0,0,0.25384382367503,0,0,0.271608227691724,0.561142271657738,0.118635018124174,0,0,0,0.192906610981141,0,0,0.429742108096597,0.191288332068843,0.220591419119515,0|short_description=p8@Col16a1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:107581 | |||
|HGNC= | |||
|MCL_coexpression_id=107 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=35bp_to_ENSMUST00000154441_5end | |||
|cluster_id=chr4:129732334..129732345,+ | |||
|description=CAGE_peak_8_at_Col16a1_5end | |||
|id=chr4:129732334..129732345,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.13e-16!43;CL:0000221!4.36e-16!44;CL:0000133!4.36e-16!44;CL:0000107!3.63e-13!9;CL:0000540!4.15e-13!33;CL:0000047!4.15e-13!33;CL:0000031!4.15e-13!33;CL:0000404!4.15e-13!33;CL:0000055!4.31e-13!50;CL:0000393!4.54e-10!39;CL:0000211!4.54e-10!39;CL:0002321!7.47e-08!70;CL:0000220!7.47e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000107,6.36e-52,9;CL:0002319,1.09e-23,43;CL:0000221,3.92e-23,44;CL:0000133,3.92e-23,44;CL:0000217,1.14e-15,2;CL:0000328,1.14e-15,2;CL:0002573,1.14e-15,2;CL:0002376,1.14e-15,2;CL:0000218,1.14e-15,2;CL:0000692,1.14e-15,2;CL:0002377,1.14e-15,2;CL:0002375,1.14e-15,2;CL:0000878,4.36e-15,2;CL:0000129,4.36e-15,2;CL:0002321,3.22e-14,70;CL:0000540,8.05e-14,33;CL:0000047,8.05e-14,33;CL:0000031,8.05e-14,33;CL:0000404,8.05e-14,33;CL:0000333,7.44e-12,10;CL:0000095,7.44e-12,10;CL:0000243,7.44e-12,10;CL:0000123,7.44e-12,10;CL:0000125,7.44e-12,10;CL:0000030,7.44e-12,10;CL:0000339,7.44e-12,10;CL:0000393,1.33e-11,39;CL:0000211,1.33e-11,39;CL:0000215,9.09e-11,3;CL:0002194,5.19e-08,4;CL:0000766,5.19e-08,4;CL:0000234,5.19e-08,4;CL:0000576,5.19e-08,4;CL:0000235,5.19e-08,4;CL:0000864,5.19e-08,4;CL:0002009,5.19e-08,4;CL:0000040,5.19e-08,4;CL:0000559,5.19e-08,4;CL:0000723,3.29e-07,91;CL:0000048,3.29e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000010!9.18e-16!11;UBERON:0002410!3.63e-13!9;UBERON:0004121!1.66e-10!102;UBERON:0000924!1.66e-10!102;UBERON:0006601!1.66e-10!102;UBERON:0000073!3.46e-10!75;UBERON:0001016!3.46e-10!75;UBERON:0001017!9.62e-09!73;UBERON:0005743!9.62e-09!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,4.22e-66,11;UBERON:0002410,6.36e-52,9;UBERON:0000011,1.42e-23,3;UBERON:0000013,1.31e-22,3;UBERON:0001016,3.30e-13,75;UBERON:0010313,1.42e-10,3;UBERON:0002342,1.42e-10,3;UBERON:0002005,1.42e-10,3;UBERON:0005428,1.42e-10,3;UBERON:0005062,1.42e-10,3;UBERON:0004121,3.22e-10,95;UBERON:0000924,3.22e-10,95;UBERON:0006601,3.22e-10,95;UBERON:0001017,3.15e-09,73 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439372365468944,0,0.279972843250725,0,0,0,0,0,0,0,0.606949382578793,0,0,0,0,0,0,0,1.19840044207362,1.53687322128622,0.103689612308478,0.270011876663381,0.420649922702764,0,0.662605622854841,0,0,0,0,0.127687338085188,0.153606533256243,0,0.0914876436024097,0,0.279182999001381,0,0.15279824777681,0,0.142371680799103,0.186399445825301,2.95332153999418,2.26714680320357,0,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0,0,0.647067399789637,0,0,0,0,0,0,0,0,0,0,0,0.376963056338593,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0.150704817835715,0,0.12811372028485,0,0.517406741478031,0,0,0,0,0.278047249225598,0.348252166522167,0.61734640922383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0.162137619091711,0,0,0,0,0,0,0,0,0,0,0,0.22237804384487,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234690248288502,0,0.238043640886014,0,0,0,0,0.163863314715738,0,0,0,0,0,0,0.80275294993896,0.586058432961016,0,0,0.94652465824877,1.56175497718655,2.15423397732799,3.82350076724083,4.01037613348309,6.51076020814315,3.23848561339915,1.16902343164525,3.95287777946523,0.642642632843614,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.241251699712623,0.358117032009409,0.164140899745061,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0.247960367176008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0.386379188064381,0,0.183151624267265,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0.209613162627982,0.183843508450014,0.222246727801615,0,0,0,0,0.188626341386076,0,0,0.114870937911227,0,0.115884325944855,0.192909220463705,0,0.294397840268795,0,0.177475806159338,0,0,0,0.25384382367503,0,0,0.271608227691724,0.561142271657738,0.118635018124174,0,0,0,0.192906610981141,0,0,0.429742108096597,0.191288332068843,0.220591419119515,0 | |||
|short_description=p8@Col16a1 | |||
}} |
Revision as of 20:01, 4 August 2015
Short description: | p8@Col16a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Col16a1_5end |
Coexpression cluster: | MCL_coexpression_mm9:107 |
Association with transcript: | 35bp_to_ENSMUST00000154441_5end |
EntrezGene: | 107581 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peripheral nervous system | 4.22e-66 | 11 |
autonomic nervous system | 6.36e-52 | 9 |
parasympathetic nervous system | 1.42e-23 | 3 |
sympathetic nervous system | 1.31e-22 | 3 |
nervous system | 3.30e-13 | 75 |
neural crest-derived structure | 1.42e-10 | 3 |
neural crest | 1.42e-10 | 3 |
enteric nervous system | 1.42e-10 | 3 |
vagal neural crest | 1.42e-10 | 3 |
neural fold | 1.42e-10 | 3 |
ectoderm-derived structure | 3.22e-10 | 95 |
ectoderm | 3.22e-10 | 95 |
presumptive ectoderm | 3.22e-10 | 95 |
central nervous system | 3.15e-09 | 73 |