FFCP PHASE1:Mm9::chr17:36046977..36047021,-: Difference between revisions
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{{FFCP|EntrezGene=73242|HGNC=|MCL_coexpression_id=22|UniProt=Q8K341,B8JJ73,B8JJ76,B8JJ74|association_with_transcript=0bp_to_ENSMUST00000025296,ENSMUST00000056034,ENSMUST00000061052,ENSMUST00000077494,ENSMUST00000127959,ENSMUST00000141662,ENSMUST00000149277,NM_001142744,NM_001142745,NM_028476,uc008cja.2,uc008cjb.2,uc008cjc.2,uc008cjd.2,uc008cje.2_5end|description=CAGE_peak_1_at_Atat1_5end|id=chr17:36046977..36047021,-|ontology_enrichment_celltype=CL:0000221!5.62e-15!44;CL:0000133!5.62e-15!44;CL:0002319!5.67e-15!43;CL:0000540!2.71e-14!33;CL:0000047!2.71e-14!33;CL:0000031!2.71e-14!33;CL:0000404!2.71e-14!33;CL:0000055!4.23e-13!50;CL:0000393!5.69e-13!39;CL:0000211!5.69e-13!39;CL:0000117!1.20e-11!23;CL:0000337!1.20e-11!23;CL:0002321!2.47e-08!70;CL:0000220!2.47e-08!70|ontology_enrichment_celltype_v019_2=CL:0000221,5.62e-15,44;CL:0000133,5.62e-15,44;CL:0002319,5.67e-15,43;CL:0000540,2.71e-14,33;CL:0000047,2.71e-14,33;CL:0000031,2.71e-14,33;CL:0000404,2.71e-14,33;CL:0000393,5.69e-13,39;CL:0000211,5.69e-13,39;CL:0000117,1.20e-11,23;CL:0000337,1.20e-11,23;CL:0002321,2.47e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.35e-24!73;UBERON:0005743!1.35e-24!73;UBERON:0000073!1.20e-23!75;UBERON:0001016!1.20e-23!75;UBERON:0004121!6.36e-21!102;UBERON:0000924!6.36e-21!102;UBERON:0006601!6.36e-21!102;UBERON:0002346!3.02e-19!71;UBERON:0003075!3.02e-19!71;UBERON:0007284!3.02e-19!71;UBERON:0001049!3.69e-17!52;UBERON:0005068!3.69e-17!52;UBERON:0006241!3.69e-17!52;UBERON:0007135!3.69e-17!52;UBERON:0000033!2.57e-16!63;UBERON:0003056!1.92e-15!49;UBERON:0000955!2.42e-14!50;UBERON:0006238!2.42e-14!50;UBERON:0002616!8.07e-14!49;UBERON:0002020!4.69e-13!34;UBERON:0003080!1.19e-12!40;UBERON:0002780!2.50e-12!39;UBERON:0001890!2.50e-12!39;UBERON:0006240!2.50e-12!39;UBERON:0002791!3.55e-10!29;UBERON:0003528!3.55e-10!29;UBERON:0001893!3.55e-10!29;UBERON:0000153!6.53e-08!94;UBERON:0000468!1.12e-07!333;UBERON:0000956!2.13e-07!21;UBERON:0001869!2.13e-07!21;UBERON:0000203!2.13e-07!21;UBERON:0000922!7.43e-07!328;UBERON:0007811!7.71e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.35e-24,73;UBERON:0001016,1.20e-23,75;UBERON:0004121,8.46e-22,95;UBERON:0000924,8.46e-22,95;UBERON:0006601,8.46e-22,95;UBERON:0002346,1.09e-20,64;UBERON:0003075,1.09e-20,64;UBERON:0007284,1.09e-20,64;UBERON:0001049,3.69e-17,52;UBERON:0005068,3.69e-17,52;UBERON:0006241,3.69e-17,52;UBERON:0007135,3.69e-17,52;UBERON:0010371,6.21e-17,73;UBERON:0000073,9.46e-17,54;UBERON:0010314,1.46e-15,92;UBERON:0003056,1.92e-15,49;UBERON:0000955,3.38e-14,47;UBERON:0006238,3.38e-14,47;UBERON:0002616,1.13e-13,46;UBERON:0002020,4.69e-13,34;UBERON:0003080,1.19e-12,40;UBERON:0002780,2.50e-12,39;UBERON:0001890,2.50e-12,39;UBERON:0006240,2.50e-12,39;UBERON:0003528,3.55e-10,29;UBERON:0002791,3.55e-10,29;UBERON:0001893,3.55e-10,29;UBERON:0000922,2.20e-08,320;UBERON:0000956,2.13e-07,21;UBERON:0001869,2.13e-07,21;UBERON:0000203,2.13e-07,21|phase1_expression=25.1433689954527,19.5426228278042,28.6649520815408,26.616850595001,33.5600139064053,23.3352187957527,18.221785966451,7.23090611272827,4.646027831005,5.38348410540585,4.96532107853964,3.82906363177615,4.62241970814255,3.4968160967599,2.33176833270964,2.83465374345756,4.19737126876888,6.78243655520211,5.62169177783529,8.06340338416257,20.0702164756525,15.2908064849363,13.0599894569468,11.1994695955385,8.48814339948529,17.8011908875656,12.0613358924541,14.4365725899546,6.46079626151671,5.54466285471848,7.98229838359097,5.08024538767705,3.69038872550742,0,6.93243887403059,6.64938581433969,8.77928231928187,5.85944283031671,3.906676722619,2.61761871986899,12.3528612486513,8.87959130445979,6.79714494243615,31.3483076759187,31.4268486780495,35.0574296628812,32.0780451182696,40.9887293995239,32.0741826792329,31.8865034481825,18.6181940761732,34.5006154475932,5.20126078778983,5.07753499407941,0.672187598284928,13.3774906738692,10.601737277734,14.4388185837684,284.254627507735,250.741724174944,246.560415963904,20.3306719241479,8.89294796111139,12.5985960419396,7.9109309005358,11.3676818391376,60.5192223247178,92.2123932771731,193.588506179928,216.279513207368,196.653838863542,80.5535776018726,73.7700926778389,224.403144161796,262.233208705895,209.581883347085,23.1243350098716,33.326395240234,28.2636021191488,310.987866467797,337.772380180096,280.772306730094,30.4309468911505,21.3849791812038,33.3100180153446,80.1389752488376,87.7009553722474,191.432230862584,10.9045718399785,15.9455991825317,11.5945795480671,6.0229671388697,1.3599426674155,15.6513925574967,10.3964226791627,13.4408066129201,11.7973312910672,11.5892619353079,13.2490862347463,16.2536204274756,28.4503707948895,7.69958864485907,15.2883143823987,35.5533351576666,10.8245520505607,9.62767488805375,11.62706223534,5.36664234679582,22.7865337609511,21.8209944425292,21.3386951922347,15.8322048722313,16.6043158024362,15.2229866958149,17.4031286560843,20.6093209780668,10.6293836125781,17.2073234734695,9.73071607144862,9.86777784679196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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:73242 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8K341,uniprot:B8JJ73,uniprot:B8JJ76,uniprot:B8JJ74 | |||
|association_with_transcript=0bp_to_ENSMUST00000025296,ENSMUST00000056034,ENSMUST00000061052,ENSMUST00000077494,ENSMUST00000127959,ENSMUST00000141662,ENSMUST00000149277,NM_001142744,NM_001142745,NM_028476,uc008cja.2,uc008cjb.2,uc008cjc.2,uc008cjd.2,uc008cje.2_5end | |||
|cluster_id=chr17:36046977..36047021,- | |||
|description=CAGE_peak_1_at_Atat1_5end | |||
|id=chr17:36046977..36047021,- | |||
|ontology_enrichment_celltype=CL:0000221!5.62e-15!44;CL:0000133!5.62e-15!44;CL:0002319!5.67e-15!43;CL:0000540!2.71e-14!33;CL:0000047!2.71e-14!33;CL:0000031!2.71e-14!33;CL:0000404!2.71e-14!33;CL:0000055!4.23e-13!50;CL:0000393!5.69e-13!39;CL:0000211!5.69e-13!39;CL:0000117!1.20e-11!23;CL:0000337!1.20e-11!23;CL:0002321!2.47e-08!70;CL:0000220!2.47e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.62e-15,44;CL:0000133,5.62e-15,44;CL:0002319,5.67e-15,43;CL:0000540,2.71e-14,33;CL:0000047,2.71e-14,33;CL:0000031,2.71e-14,33;CL:0000404,2.71e-14,33;CL:0000393,5.69e-13,39;CL:0000211,5.69e-13,39;CL:0000117,1.20e-11,23;CL:0000337,1.20e-11,23;CL:0002321,2.47e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.35e-24!73;UBERON:0005743!1.35e-24!73;UBERON:0000073!1.20e-23!75;UBERON:0001016!1.20e-23!75;UBERON:0004121!6.36e-21!102;UBERON:0000924!6.36e-21!102;UBERON:0006601!6.36e-21!102;UBERON:0002346!3.02e-19!71;UBERON:0003075!3.02e-19!71;UBERON:0007284!3.02e-19!71;UBERON:0001049!3.69e-17!52;UBERON:0005068!3.69e-17!52;UBERON:0006241!3.69e-17!52;UBERON:0007135!3.69e-17!52;UBERON:0000033!2.57e-16!63;UBERON:0003056!1.92e-15!49;UBERON:0000955!2.42e-14!50;UBERON:0006238!2.42e-14!50;UBERON:0002616!8.07e-14!49;UBERON:0002020!4.69e-13!34;UBERON:0003080!1.19e-12!40;UBERON:0002780!2.50e-12!39;UBERON:0001890!2.50e-12!39;UBERON:0006240!2.50e-12!39;UBERON:0002791!3.55e-10!29;UBERON:0003528!3.55e-10!29;UBERON:0001893!3.55e-10!29;UBERON:0000153!6.53e-08!94;UBERON:0000468!1.12e-07!333;UBERON:0000956!2.13e-07!21;UBERON:0001869!2.13e-07!21;UBERON:0000203!2.13e-07!21;UBERON:0000922!7.43e-07!328;UBERON:0007811!7.71e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.35e-24,73;UBERON:0001016,1.20e-23,75;UBERON:0004121,8.46e-22,95;UBERON:0000924,8.46e-22,95;UBERON:0006601,8.46e-22,95;UBERON:0002346,1.09e-20,64;UBERON:0003075,1.09e-20,64;UBERON:0007284,1.09e-20,64;UBERON:0001049,3.69e-17,52;UBERON:0005068,3.69e-17,52;UBERON:0006241,3.69e-17,52;UBERON:0007135,3.69e-17,52;UBERON:0010371,6.21e-17,73;UBERON:0000073,9.46e-17,54;UBERON:0010314,1.46e-15,92;UBERON:0003056,1.92e-15,49;UBERON:0000955,3.38e-14,47;UBERON:0006238,3.38e-14,47;UBERON:0002616,1.13e-13,46;UBERON:0002020,4.69e-13,34;UBERON:0003080,1.19e-12,40;UBERON:0002780,2.50e-12,39;UBERON:0001890,2.50e-12,39;UBERON:0006240,2.50e-12,39;UBERON:0003528,3.55e-10,29;UBERON:0002791,3.55e-10,29;UBERON:0001893,3.55e-10,29;UBERON:0000922,2.20e-08,320;UBERON:0000956,2.13e-07,21;UBERON:0001869,2.13e-07,21;UBERON:0000203,2.13e-07,21 | |||
|phase1_expression=25.1433689954527,19.5426228278042,28.6649520815408,26.616850595001,33.5600139064053,23.3352187957527,18.221785966451,7.23090611272827,4.646027831005,5.38348410540585,4.96532107853964,3.82906363177615,4.62241970814255,3.4968160967599,2.33176833270964,2.83465374345756,4.19737126876888,6.78243655520211,5.62169177783529,8.06340338416257,20.0702164756525,15.2908064849363,13.0599894569468,11.1994695955385,8.48814339948529,17.8011908875656,12.0613358924541,14.4365725899546,6.46079626151671,5.54466285471848,7.98229838359097,5.08024538767705,3.69038872550742,0,6.93243887403059,6.64938581433969,8.77928231928187,5.85944283031671,3.906676722619,2.61761871986899,12.3528612486513,8.87959130445979,6.79714494243615,31.3483076759187,31.4268486780495,35.0574296628812,32.0780451182696,40.9887293995239,32.0741826792329,31.8865034481825,18.6181940761732,34.5006154475932,5.20126078778983,5.07753499407941,0.672187598284928,13.3774906738692,10.601737277734,14.4388185837684,284.254627507735,250.741724174944,246.560415963904,20.3306719241479,8.89294796111139,12.5985960419396,7.9109309005358,11.3676818391376,60.5192223247178,92.2123932771731,193.588506179928,216.279513207368,196.653838863542,80.5535776018726,73.7700926778389,224.403144161796,262.233208705895,209.581883347085,23.1243350098716,33.326395240234,28.2636021191488,310.987866467797,337.772380180096,280.772306730094,30.4309468911505,21.3849791812038,33.3100180153446,80.1389752488376,87.7009553722474,191.432230862584,10.9045718399785,15.9455991825317,11.5945795480671,6.0229671388697,1.3599426674155,15.6513925574967,10.3964226791627,13.4408066129201,11.7973312910672,11.5892619353079,13.2490862347463,16.2536204274756,28.4503707948895,7.69958864485907,15.2883143823987,35.5533351576666,10.8245520505607,9.62767488805375,11.62706223534,5.36664234679582,22.7865337609511,21.8209944425292,21.3386951922347,15.8322048722313,16.6043158024362,15.2229866958149,17.4031286560843,20.6093209780668,10.6293836125781,17.2073234734695,9.73071607144862,9.86777784679196,5.07935492458905,5.81850303762267,9.31958806090611,26.6430525280508,23.0391377494801,11.240110429178,5.27186547826049,2.39961092397363,3.81210681219194,39.3949381634684,36.6000482254901,256.083569606018,42.7607827673,36.8230258555676,44.2588534911863,37.477731768652,17.9237280376557,10.3257785606377,17.6905930903572,12.8369532090749,47.4939616813869,50.8083650797975,67.523298677006,49.732589885786,51.1634473617985,43.6867786171338,43.196495022035,20.4375662883822,43.1135985865684,54.4625510883319,55.6005552358078,33.0985555965638,27.2486304241086,14.9748431604532,14.610531684964,38.0155449623322,2.1066395619397,2.31613116403244,1.70498099637356,33.1401236056803,27.4395490177883,30.0703642639895,31.0135603616625,28.727577835121,24.5284709490931,24.6485981435432,22.2666923161684,13.4280143722245,17.7724637906559,15.9242440156722,13.0520783368828,9.0643992203706,8.56245449635098,6.84452735677896,45.8432087869797,208.690553905189,19.4947081960441,8.46241813323342,39.2450380984831,37.3901041695306,22.8095406540105,21.176770085451,18.6797556829691,14.0766963323294,12.3377556001573,5.76446341534038,12.8180956488137,11.3405189063456,12.2827374885046,8.98819408654222,13.400559092231,13.7407478545513,33.9505542706016,23.8779391354333,31.5581659884625,23.6235540300565,22.8863934857798,16.2715102145539,20.9945303252534,12.989693022205,10.9899109488962,9.25478729413504,8.00422093135302,10.67808676583,9.43483176543374,6.2961391467759,7.91154473415161,8.20002343158217,6.62027214631691,9.49397253587675,4.05338066937588,4.66754402419738,8.62609239164127,8.93138274404408,10.6092808858951,7.32478746046624,7.89348619496414,10.6137574699941,12.1937105509959,34.8664197657692,36.1782247701297,24.6130374374023,19.0099101113687,29.3135950523178,17.377185784679,12.4885534628991,24.1181770482472,21.4820748959312,22.1642128433907,10.651115456523,12.9513736399422,12.0058718622655,10.5553898757491,4.89515115436839,12.7858710984949,10.2096596132751,34.5183768473753,42.7822656061542,7.54100748732707,5.80683132570058,32.1818383804582,28.8924670779512,37.0528244100414,40.8636644498864,46.1193255350556,48.1230102341015,42.100312974189,40.9158201075837,45.8533822417967,51.7327319439109,27.5363765304041,30.0930870197661,16.125808976004,29.1997117661388,9.2921596837974,25.4919667962731,16.0231485191318,10.3732793865744,13.2885851796348,15.0643222492524,6.46070732920553,15.2684166380552,11.4079161083111,8.21695570633122,3.16255825724996,8.25084345985495,30.6395645178409,42.4944181913892,49.1562998374467,45.6537884617292,37.9508099994465,28.8957484515354,30.1124707701881,17.3545020995322,9.62154003061212,16.7347335982418,20.2886126210565,18.3023740765043,10.4951877352339,11.3388298864933,9.31104283224465,8.20704498725306,11.659233465194,50.9919580528902,4.61351378154202,18.1620443807636,11.8524497516615,5.27431679613135,5.46776910884101,4.57556346413045,8.32894306969891,8.81694149639045,7.46279858543889,10.5013767981662,52.0372709440968,32.3277952731689,1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| |||
|short_description=p1@Atat1 | |||
}} |
Revision as of 20:25, 4 August 2015
Short description: | p1@Atat1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Atat1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000025296, ENSMUST00000056034, ENSMUST00000061052, ENSMUST00000077494, ENSMUST00000127959, ENSMUST00000141662, ENSMUST00000149277, NM_001142744, NM_001142745, NM_028476, uc008cja.2, uc008cjb.2, uc008cjc.2, uc008cjd.2, uc008cje.2_5end |
EntrezGene: | 73242 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.62e-15 | 44 |
neurectodermal cell | 5.62e-15 | 44 |
neural cell | 5.67e-15 | 43 |
neuron | 2.71e-14 | 33 |
neuronal stem cell | 2.71e-14 | 33 |
neuroblast | 2.71e-14 | 33 |
electrically signaling cell | 2.71e-14 | 33 |
electrically responsive cell | 5.69e-13 | 39 |
electrically active cell | 5.69e-13 | 39 |
CNS neuron (sensu Vertebrata) | 1.20e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.20e-11 | 23 |
embryonic cell | 2.47e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.35e-24 | 73 |
nervous system | 1.20e-23 | 75 |
ectoderm-derived structure | 8.46e-22 | 95 |
ectoderm | 8.46e-22 | 95 |
presumptive ectoderm | 8.46e-22 | 95 |
neurectoderm | 1.09e-20 | 64 |
neural plate | 1.09e-20 | 64 |
presumptive neural plate | 1.09e-20 | 64 |
neural tube | 3.69e-17 | 52 |
neural rod | 3.69e-17 | 52 |
future spinal cord | 3.69e-17 | 52 |
neural keel | 3.69e-17 | 52 |
ecto-epithelium | 6.21e-17 | 73 |
regional part of nervous system | 9.46e-17 | 54 |
structure with developmental contribution from neural crest | 1.46e-15 | 92 |
pre-chordal neural plate | 1.92e-15 | 49 |
brain | 3.38e-14 | 47 |
future brain | 3.38e-14 | 47 |
regional part of brain | 1.13e-13 | 46 |
gray matter | 4.69e-13 | 34 |
anterior neural tube | 1.19e-12 | 40 |
regional part of forebrain | 2.50e-12 | 39 |
forebrain | 2.50e-12 | 39 |
future forebrain | 2.50e-12 | 39 |
brain grey matter | 3.55e-10 | 29 |
regional part of telencephalon | 3.55e-10 | 29 |
telencephalon | 3.55e-10 | 29 |
embryo | 2.20e-08 | 320 |
cerebral cortex | 2.13e-07 | 21 |
cerebral hemisphere | 2.13e-07 | 21 |
pallium | 2.13e-07 | 21 |